F215381

General Info

Members Datasets Scaffolds Average Seq Length
152 112 150 485

Family's Representative Sequence

Representative Sequence 3300048918|Ga0496115_0000226|Ga0496115_0000226_49711_51375
Length 554
Sequence MATIIEQLEKRNPAVRRRRAAQSSALADGQSAPQPSSDAQVRPVDRLGEDAQLTASAAELASRSERRRWIALAVLCLGQLMMVLDSTIVNVALPSIQHDLGFTQGNLTWVLDGYLITFGGFLLLAGRLGDLVGRKRVFLSGLVLFTVASVLCGIADSQGLLIGARLLQGVGGAVASSVILAIIVTEFPEKREQAKAMGLYAFVSAGGGSIGLLAGGALTQSLDWHWIFFVNVPIGIVAFALGSRLIVENDGIGLKGGVDWLGSVLITLATMAGAFAIVKSSEYGLTSARTLGVGGGALVLLASFLWLESRLENPIMPLRILRLRALMGSSLVRGFLITGMFSAFFLGSLYLEHVLGYDAISTGLAFMPLTIAIAVMSMGVSARIVERFGAVNTLAAGLVGIIAGLVLLATQGVHASYFPGLFFAFLALGLGAGASFLPLLTIGMSDAPKRDAGLASGIVNVSVQLFGAIGLATLGTIATDHTKALSSSGQALNSALTGGYHLAYVVGAVCVAVGILAAFITLRPPSRTVMQEVEELERDFGRASASAQTAEQLI

Samples

Sample ID Description Type Environment
1 2773857922 Frankia sp. CcI49 Isolate Nodule
2 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
3 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
4 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
5 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
6 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
7 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
8 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
9 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
10 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
11 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
12 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
13 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
14 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
15 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
16 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
17 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
18 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
19 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
20 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
21 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
22 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
23 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
24 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
25 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
26 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
27 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
28 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
29 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
30 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
31 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
32 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
33 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
34 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
35 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
36 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
37 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
38 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
39 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
55 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
58 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
59 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
60 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
61 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
62 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
63 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
64 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
65 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
66 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
67 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
68 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
69 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
70 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
71 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
72 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
73 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
74 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
75 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
76 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
77 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
78 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
79 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
80 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
81 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
82 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
83 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
84 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
85 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
86 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
87 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
88 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
89 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
90 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
91 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
92 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
93 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
94 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
95 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
96 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
97 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
98 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
99 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
100 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
101 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
102 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
103 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
104 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
105 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
106 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
107 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
108 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
109 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
110 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
111 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
112 8055157932 Frankia umida Ag45/Mut15 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 98.68
Metatranscriptomes 0
Isolates 1.32

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.66
Nodule 1.32
Rhizoplane 11.84
Rhizosphere 77.63
Stem 0
Stem Tuber 0
Unclassified 8.55

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070682_100093445 3300005337 Bacteria 1972
2 Ga0070659_100099570 3300005366 Bacteria 2338
3 Ga0070714_100006760 3300005435 Bacteria 8890
4 Ga0070705_100021488 3300005440 Bacteria 3434
5 Ga0070708_100265140 3300005445 Bacteria 1615
6 Ga0070678_100000429 3300005456 Bacteria 19875
7 Ga0070678_100150023 3300005456 Bacteria 1877
8 Ga0070706_100002479 3300005467 Bacteria 18578
9 Ga0070706_100223678 3300005467 Bacteria 1757
10 Ga0070707_100060763 3300005468 Bacteria 3624
11 Ga0070698_100025156 3300005471 Bacteria 6204
12 Ga0070697_100000002 3300005536 Bacteria 418511
13 Ga0070697_100005573 3300005536 Bacteria 9706
14 Ga0070695_100146885 3300005545 Bacteria 1641
15 Ga0070702_100008724 3300005615 Bacteria 4926
16 Ga0068859_100000044 3300005617 Bacteria 144391
17 Ga0068866_10012921 3300005718 Bacteria 3648
18 Ga0068863_100000325 3300005841 Bacteria 48321
19 Ga0068858_100000335 3300005842 Bacteria 49738
20 Ga0068860_100075246 3300005843 Bacteria 3211
21 Ga0068862_100000263 3300005844 Bacteria 58636
22 Ga0081455_10001438 3300005937 Bacteria 29449
23 Ga0081455_10060393 3300005937 Bacteria 3196
24 Ga0081540_1001723 3300005983 Bacteria 18496
25 Ga0070715_10031710 3300006163 Bacteria 2147
26 Ga0070712_100061522 3300006175 Bacteria 2652
27 Ga0070712_100063167 3300006175 Bacteria 2621
28 Ga0070712_100073207 3300006175 Bacteria 2457
29 Ga0097621_100011239 3300006237 Bacteria 6591
30 Ga0068865_100033812 3300006881 Bacteria 3425
31 Ga0097620_100000044 3300006931 Bacteria 144391
32 Ga0105245_10082730 3300009098 Bacteria 2937
33 Ga0105245_10174820 3300009098 Bacteria 2047
34 Ga0105247_10000094 3300009101 Bacteria 96396
35 Ga0105247_10003260 3300009101 Bacteria 10645
36 Ga0105247_10007409 3300009101 Bacteria 6736
37 Ga0105243_10044687 3300009148 Bacteria 3476
38 Ga0105243_10103466 3300009148 Bacteria 2368
39 Ga0105242_10037212 3300009176 Bacteria 3908
40 Ga0105237_10002708 3300009545 Bacteria 21638
41 Ga0105249_10004568 3300009553 Bacteria 11965
42 Ga0157378_10020972 3300013297 Bacteria 5749
43 Ga0157375_10014164 3300013308 Bacteria 7111
44 Ga0163163_10027385 3300014325 Bacteria 5460
45 Ga0163163_10030381 3300014325 Bacteria 5206
46 Ga0157379_10001649 3300014968 Bacteria 18441
47 Ga0157379_10062849 3300014968 Bacteria 3320
48 Ga0157376_10017229 3300014969 Bacteria 5505
49 Ga0213875_10000468 3300021388 Bacteria 34648
50 Ga0207710_10000119 3300025900 Bacteria 97053
51 Ga0207710_10000447 3300025900 Bacteria 26819
52 Ga0207688_10032227 3300025901 Bacteria 2895
53 Ga0207699_10056115 3300025906 Bacteria 2346
54 Ga0207684_10000012 3300025910 Bacteria 478666
55 Ga0207684_10010053 3300025910 Bacteria 8333
56 Ga0207671_10001682 3300025914 Bacteria 25096
57 Ga0207693_10032528 3300025915 Bacteria 4116
58 Ga0207693_10035512 3300025915 Bacteria 3929
59 Ga0207693_10065269 3300025915 Bacteria 2851
60 Ga0207649_10045473 3300025920 Bacteria 2692
61 Ga0207646_10000279 3300025922 Bacteria 69923
62 Ga0207646_10004890 3300025922 Bacteria 14349
63 Ga0207646_10028034 3300025922 Bacteria 5132
64 Ga0207664_10006937 3300025929 Bacteria 7835
65 Ga0207706_10046337 3300025933 Bacteria 3850
66 Ga0207706_10155829 3300025933 Bacteria 2009
67 Ga0207686_10026030 3300025934 Bacteria 3411
68 Ga0207669_10052080 3300025937 Bacteria 2457
69 Ga0207712_10016112 3300025961 Bacteria 4833
70 Ga0207703_10000346 3300026035 Bacteria 49752
71 Ga0207683_10000149 3300026121 Bacteria 57867
72 Ga0207428_10141837 3300027907 Bacteria 1833
73 Ga0268265_10000180 3300028380 Bacteria 74801
74 Ga0268264_10037791 3300028381 Bacteria 3982
75 Ga0265337_1006214 3300028556 Bacteria 4639
76 Ga0265319_1000109 3300028563 Bacteria 63717
77 Ga0265318_10000621 3300028577 Bacteria 24545
78 Ga0265322_10004241 3300028654 Bacteria 4288
79 Ga0265336_10000060 3300028666 Bacteria 103055
80 Ga0265338_10000234 3300028800 Bacteria 103028
81 Ga0265324_10004458 3300029957 Bacteria 6318
82 Ga0265340_10000014 3300031247 Bacteria 103055
83 Ga0265327_10065995 3300031251 Bacteria 1828
84 Ga0265316_10020911 3300031344 Bacteria 5558
85 Ga0265342_10039084 3300031712 Bacteria 2885
86 Ga0373935_0131190 3300035692 Bacteria 1684
87 Ga0373947_0004712 3300035725 Bacteria 7992
88 Ga0373947_0091616 3300035725 Bacteria 1897
89 Ga0395900_0003171 3300037418 Bacteria 17829
90 Ga0395898_0001181 3300037466 Bacteria 39826
91 Ga0436364_0172091 3300037853 Bacteria 4871
92 Ga0436364_0845783 3300037853 Bacteria 5093
93 Ga0436364_1031907 3300037853 Bacteria 102112
94 Ga0436364_1035295 3300037853 Bacteria 3578
95 Ga0436364_1549089 3300037853 Bacteria 14232
96 Ga0436365_0398459 3300039437 Bacteria 3979
97 Ga0436365_0922783 3300039437 Bacteria 12662
98 Ga0436365_1434198 3300039437 Bacteria 11133
99 Ga0436363_1023456 3300039450 Bacteria 1775
100 Ga0436362_1275900 3300039453 Bacteria 1891
101 Ga0466963_0008052 3300044694 Bacteria 6309
102 Ga0466963_0032031 3300044694 Bacteria 3401
103 Ga0466964_0025995 3300044706 Bacteria 2289
104 Ga0466957_0096416 3300044842 Bacteria 1859
105 Ga0466959_0028541 3300045049 Bacteria 4138
106 Ga0466958_0001371 3300045836 Bacteria 11507
107 Ga0466958_0030866 3300045836 Bacteria 3186
108 Ga0466958_0134689 3300045836 Bacteria 1553
109 Ga0466967_0050099 3300045976 Bacteria 3656
110 Ga0466967_0051338 3300045976 Bacteria 3613
111 Ga0495608_0069358 3300046511 Bacteria 2303
112 Ga0495608_0071807 3300046511 Bacteria 2258
113 Ga0495618_0000054 3300046514 Bacteria 83787
114 Ga0495630_0000600 3300046517 Bacteria 26153
115 Ga0495645_0000088 3300046543 Bacteria 63785
116 Ga0495657_0000006 3300046675 Bacteria 250610
117 Ga0495684_0002026 3300047471 Bacteria 16297
118 Ga0495684_0102193 3300047471 Bacteria 2167
119 Ga0495686_0000008 3300047472 Bacteria 727479
120 Ga0495686_0016250 3300047472 Bacteria 5052
121 Ga0496100_0000874 3300048903 Bacteria 14382
122 Ga0496101_0002513 3300048904 Bacteria 11259
123 Ga0496101_0002691 3300048904 Bacteria 10902
124 Ga0496102_0000002 3300048905 Bacteria 814588
125 Ga0496103_0000218 3300048906 Bacteria 56596
126 Ga0496103_0043786 3300048906 Bacteria 2757
127 Ga0496104_0000006 3300048907 Bacteria 536446
128 Ga0496106_0032922 3300048909 Bacteria 3865
129 Ga0496107_0033101 3300048910 Bacteria 3697
130 Ga0496109_0042469 3300048912 Bacteria 4118
131 Ga0496110_0000156 3300048913 Bacteria 41321
132 Ga0496110_0067212 3300048913 Bacteria 3172
133 Ga0496111_0000196 3300048914 Bacteria 28066
134 Ga0496114_0004373 3300048917 Bacteria 10944
135 Ga0496114_0023185 3300048917 Bacteria 5063
136 Ga0496115_0000226 3300048918 Bacteria 51586
137 Ga0496115_0000298 3300048918 Bacteria 42677
138 Ga0496115_0019306 3300048918 Bacteria 5245
139 Ga0496119_0000514 3300048922 Bacteria 52716
140 Ga0496120_0000224 3300048923 Bacteria 97511
141 Ga0496121_0015608 3300048924 Bacteria 7933
142 Ga0501047_0010749 3300049581 Bacteria 8653
143 Ga0501080_0276250 3300049742 Bacteria 1528
144 nmdc:mga0qj67_22304_c1 3300050509 Bacteria 4864
145 nmdc:mga08y16_136720_c1 3300050511 Bacteria 2547
146 Ga0495601_0003408 3300053077 Bacteria 9112
147 Ga0495601_0012975 3300053077 Bacteria 5005
148 Ga0495612_0000049 3300053078 Bacteria 54959
149 Ga0495619_0037897 3300053085 Bacteria 3144
150 Ga0500616_0012970 3300053153 Bacteria 4855

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300006175 Ga0070712_100061522 Ga0070712_1000615222 430
2 3300025901 Ga0207688_10032227 Ga0207688_100322273 432
3 3300005841 Ga0068863_100000325 Ga0068863_10000032551 436
4 3300053153 Ga0500616_0012970 Ga0500616_0012970_2573_4051 437
5 3300005617 Ga0068859_100000044 Ga0068859_10000004494 440
6 3300006931 Ga0097620_100000044 Ga0097620_10000004494 440
7 3300009553 Ga0105249_10004568 Ga0105249_1000456810 440
8 3300014325 Ga0163163_10030381 Ga0163163_100303812 440
9 3300025961 Ga0207712_10016112 Ga0207712_100161126 440
10 3300044842 Ga0466957_0096416 Ga0466957_0096416_133_1554 440
11 3300005844 Ga0068862_100000263 Ga0068862_1000002639 442
12 3300028380 Ga0268265_10000180 Ga0268265_100001808 442
13 3300037853 Ga0436364_1549089 Ga0436364_1549089_9097_10599 442
14 3300039437 Ga0436365_0922783 Ga0436365_0922783_9193_10695 442
15 3300039450 Ga0436363_1023456 Ga0436363_1023456_57_1559 442
16 3300039453 Ga0436362_1275900 Ga0436362_1275900_74_1576 442
17 3300045976 Ga0466967_0050099 Ga0466967_0050099_1483_2937 443
18 3300045836 Ga0466958_0134689 Ga0466958_0134689_68_1492 446
19 3300053077 Ga0495601_0012975 Ga0495601_0012975_2849_4372 448
20 3300047472 Ga0495686_0016250 Ga0495686_0016250_3340_4935 449
21 3300045976 Ga0466967_0051338 Ga0466967_0051338_52_1470 450
22 3300009101 Ga0105247_10000094 Ga0105247_1000009484 451
23 3300014325 Ga0163163_10027385 Ga0163163_100273853 451
24 3300014968 Ga0157379_10062849 Ga0157379_100628493 451
25 3300025900 Ga0207710_10000119 Ga0207710_1000011985 451
26 3300044694 Ga0466963_0008052 Ga0466963_0008052_71_1492 451
27 3300048917 Ga0496114_0023185 Ga0496114_0023185_1298_2794 451
28 3300048918 Ga0496115_0019306 Ga0496115_0019306_1771_3267 451
29 3300048922 Ga0496119_0000514 Ga0496119_0000514_30613_32187 451
30 3300048923 Ga0496120_0000224 Ga0496120_0000224_75423_76997 451
31 3300046511 Ga0495608_0069358 Ga0495608_0069358_87_1868 452
32 3300005467 Ga0070706_100002479 Ga0070706_10000247910 453
33 3300025910 Ga0207684_10010053 Ga0207684_1001005310 453
34 3300025922 Ga0207646_10004890 Ga0207646_100048904 453
35 3300025920 Ga0207649_10045473 Ga0207649_100454732 455
36 3300045836 Ga0466958_0030866 Ga0466958_0030866_946_2439 456
37 3300046543 Ga0495645_0000088 Ga0495645_0000088_51_1724 458
38 3300050511 nmdc:mga08y16_136720_c1 nmdc:mga08y16_136720_c1_540_1976 459
39 3300046514 Ga0495618_0000054 Ga0495618_0000054_55355_56941 460
40 3300009098 Ga0105245_10082730 Ga0105245_100827302 462
41 3300025933 Ga0207706_10155829 Ga0207706_101558291 462
42 3300025937 Ga0207669_10052080 Ga0207669_100520802 462
43 3300031251 Ga0265327_10065995 Ga0265327_100659952 462
44 3300028556 Ga0265337_1006214 Ga0265337_10062143 464
45 3300028563 Ga0265319_1000109 Ga0265319_100010965 464
46 3300028577 Ga0265318_10000621 Ga0265318_1000062123 464
47 3300028654 Ga0265322_10004241 Ga0265322_100042413 464
48 3300028666 Ga0265336_10000060 Ga0265336_1000006064 464
49 3300028800 Ga0265338_10000234 Ga0265338_1000023465 464
50 3300029957 Ga0265324_10004458 Ga0265324_100044584 464
51 3300031247 Ga0265340_10000014 Ga0265340_1000001449 464
52 3300031344 Ga0265316_10020911 Ga0265316_100209114 464
53 3300031712 Ga0265342_10039084 Ga0265342_100390842 464
54 3300047472 Ga0495686_0000008 Ga0495686_0000008_176564_178015 464
55 3300048905 Ga0496102_0000002 Ga0496102_0000002_200374_201900 464
56 3300048906 Ga0496103_0000218 Ga0496103_0000218_50313_51839 464
57 3300005366 Ga0070659_100099570 Ga0070659_1000995702 465
58 3300005456 Ga0070678_100150023 Ga0070678_1001500231 465
59 3300005536 Ga0070697_100000002 Ga0070697_100000002155 465
60 3300009148 Ga0105243_10103466 Ga0105243_101034663 465
61 3300025933 Ga0207706_10046337 Ga0207706_100463373 466
62 3300039437 Ga0436365_1434198 Ga0436365_1434198_7663_9159 466
63 3300049581 Ga0501047_0010749 Ga0501047_0010749_727_2169 466
64 3300049742 Ga0501080_0276250 Ga0501080_0276250_74_1516 466
65 3300044694 Ga0466963_0032031 Ga0466963_0032031_874_2361 467
66 3300050509 nmdc:mga0qj67_22304_c1 nmdc:mga0qj67_22304_c1_810_2285 467
67 3300045049 Ga0466959_0028541 Ga0466959_0028541_1250_2737 471
68 3300005937 Ga0081455_10060393 Ga0081455_100603932 472
69 3300025915 Ga0207693_10065269 Ga0207693_100652694 472
70 3300037853 Ga0436364_1035295 Ga0436364_1035295_1941_3437 472
71 3300039437 Ga0436365_0398459 Ga0436365_0398459_2388_3884 472
72 3300037853 Ga0436364_0845783 Ga0436364_0845783_1315_2823 473
73 3300044706 Ga0466964_0025995 Ga0466964_0025995_574_2085 473
74 3300045836 Ga0466958_0001371 Ga0466958_0001371_314_1825 473
75 3300048907 Ga0496104_0000006 Ga0496104_0000006_284923_286452 473
76 3300048913 Ga0496110_0000156 Ga0496110_0000156_32986_34515 473
77 3300048914 Ga0496111_0000196 Ga0496111_0000196_7459_8988 473
78 3300006175 Ga0070712_100063167 Ga0070712_1000631672 474
79 3300006175 Ga0070712_100073207 Ga0070712_1000732072 474
80 3300025906 Ga0207699_10056115 Ga0207699_100561152 474
81 3300025915 Ga0207693_10032528 Ga0207693_100325282 474
82 3300025915 Ga0207693_10035512 Ga0207693_100355122 474
83 3300037418 Ga0395900_0003171 Ga0395900_0003171_12658_14163 474
84 3300037466 Ga0395898_0001181 Ga0395898_0001181_21139_22644 474
85 3300035725 Ga0373947_0004712 Ga0373947_0004712_1556_3001 475
86 3300005445 Ga0070708_100265140 Ga0070708_1002651401 476
87 3300005536 Ga0070697_100005573 Ga0070697_10000557310 476
88 3300005545 Ga0070695_100146885 Ga0070695_1001468852 476
89 3300046517 Ga0495630_0000600 Ga0495630_0000600_21720_23357 477
90 3300046675 Ga0495657_0000006 Ga0495657_0000006_185762_187399 477
91 3300047471 Ga0495684_0002026 Ga0495684_0002026_1781_3331 477
92 3300009098 Ga0105245_10174820 Ga0105245_101748202 478
93 3300048904 Ga0496101_0002691 Ga0496101_0002691_479_1978 478
94 3300053078 Ga0495612_0000049 Ga0495612_0000049_11494_13059 478
95 3300005435 Ga0070714_100006760 Ga0070714_1000067605 479
96 3300025929 Ga0207664_10006937 Ga0207664_100069375 479
97 3300035725 Ga0373947_0091616 Ga0373947_0091616_15_1466 479
98 3300021388 Ga0213875_10000468 Ga0213875_1000046838 480
99 3300037853 Ga0436364_1031907 Ga0436364_1031907_80905_82449 480
100 3300027907 Ga0207428_10141837 Ga0207428_101418371 481
101 3300048913 Ga0496110_0067212 Ga0496110_0067212_113_1582 481
102 3300053077 Ga0495601_0003408 Ga0495601_0003408_38_1612 481
103 3300005468 Ga0070707_100060763 Ga0070707_1000607634 482
104 3300005471 Ga0070698_100025156 Ga0070698_1000251566 482
105 3300025910 Ga0207684_10000012 Ga0207684_10000012119 482
106 3300025922 Ga0207646_10000279 Ga0207646_1000027947 482
107 3300025922 Ga0207646_10028034 Ga0207646_100280343 482
108 3300035692 Ga0373935_0131190 Ga0373935_0131190_157_1641 482
109 3300005983 Ga0081540_1001723 Ga0081540_100172311 483
110 3300014968 Ga0157379_10001649 Ga0157379_1000164914 483
111 3300005842 Ga0068858_100000335 Ga0068858_10000033534 484
112 3300009101 Ga0105247_10003260 Ga0105247_100032605 484
113 3300025900 Ga0207710_10000447 Ga0207710_100004475 484
114 3300026035 Ga0207703_10000346 Ga0207703_1000034618 484
115 3300048924 Ga0496121_0015608 Ga0496121_0015608_626_2152 484
116 3300048912 Ga0496109_0042469 Ga0496109_0042469_2235_3758 485
117 3300005467 Ga0070706_100223678 Ga0070706_1002236781 487
118 3300037853 Ga0436364_0172091 Ga0436364_0172091_3319_4821 488
119 3300005615 Ga0070702_100008724 Ga0070702_1000087243 489
120 3300013297 Ga0157378_10020972 Ga0157378_100209724 489
121 3300048904 Ga0496101_0002513 Ga0496101_0002513_8559_10055 489
122 3300046511 Ga0495608_0071807 Ga0495608_0071807_541_2064 490
123 3300047471 Ga0495684_0102193 Ga0495684_0102193_117_1640 490
124 3300053085 Ga0495619_0037897 Ga0495619_0037897_31_1554 490
125 3300009545 Ga0105237_10002708 Ga0105237_100027083 492
126 3300025914 Ga0207671_10001682 Ga0207671_100016828 492
127 iso_pu_bacteria 2773857922 2774852809 493
128 3300048903 Ga0496100_0000874 Ga0496100_0000874_5303_7027 494
129 3300048918 Ga0496115_0000226 Ga0496115_0000226_49711_51375 494
130 3300048918 Ga0496115_0000298 Ga0496115_0000298_15336_16919 494
131 iso_pu_bacteria 8055157932 8055162162 495
132 3300005937 Ga0081455_10001438 Ga0081455_1000143812 497
133 3300005337 Ga0070682_100093445 Ga0070682_1000934451 498
134 3300005440 Ga0070705_100021488 Ga0070705_1000214883 498
135 3300005456 Ga0070678_100000429 Ga0070678_10000042915 498
136 3300005718 Ga0068866_10012921 Ga0068866_100129212 498
137 3300005843 Ga0068860_100075246 Ga0068860_1000752465 498
138 3300006163 Ga0070715_10031710 Ga0070715_100317102 498
139 3300006237 Ga0097621_100011239 Ga0097621_1000112393 498
140 3300006881 Ga0068865_100033812 Ga0068865_1000338123 498
141 3300009101 Ga0105247_10007409 Ga0105247_100074098 498
142 3300009148 Ga0105243_10044687 Ga0105243_100446872 498
143 3300009176 Ga0105242_10037212 Ga0105242_100372125 498
144 3300013308 Ga0157375_10014164 Ga0157375_100141643 498
145 3300014969 Ga0157376_10017229 Ga0157376_100172296 498
146 3300025934 Ga0207686_10026030 Ga0207686_100260302 498
147 3300026121 Ga0207683_10000149 Ga0207683_1000014950 498
148 3300028381 Ga0268264_10037791 Ga0268264_100377914 498
149 3300048906 Ga0496103_0043786 Ga0496103_0043786_1059_2555 498
150 3300048909 Ga0496106_0032922 Ga0496106_0032922_723_2219 498
151 3300048910 Ga0496107_0033101 Ga0496107_0033101_1922_3418 498
152 3300048917 Ga0496114_0004373 Ga0496114_0004373_5751_7247 498

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07690

MFS_1

Major Facilitator Superfamily

75

471

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
7y58-assembly1.cif.gz_A cryoem structure of qaca (d411n), an antibacterial efflux transporter from staphylococcus aureus 0.9196 14 469
7d5q-assembly1.cif.gz_A structure of norc transporter (k398a mutant) in an outward-open conformation in complex with a single-chain indian camelid antibody 0.8942 17 469
7d5p-assembly1.cif.gz_A structure of norc transporter in an outward-open conformation in complex with a single-chain indian camelid antibody 0.8899 17 469
7d5q-assembly2.cif.gz_B structure of norc transporter (k398a mutant) in an outward-open conformation in complex with a single-chain indian camelid antibody 0.8884 17 469
7d5q-assembly1.cif.gz_A structure of norc transporter (k398a mutant) in an outward-open conformation in complex with a single-chain indian camelid antibody 0.888 17 469
ID Description Score Start End Superfamily
af_P9WG87_21_208_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9689 20 196 1.20.1250.20
af_P76269_18_258_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9633 20 260 1.20.1250.20
af_Q2FW85_14_250_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9586 18 254 1.20.1250.20
af_P76269_18_258_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9517 20 260 1.20.1250.20
af_Q2G199_12_244_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9471 18 249 1.20.1250.20
ID Description Score Start End GO Terms
AF-A0A552QYS5-F1-model_v4 MFS transporter 0.99 29 253 GO:0016020
GO:0022857
GO:0046677
AF-A0A3B8XEQ8-F1-model_v4 MFS transporter 0.9883 12 226 GO:0016020
GO:0022857
AF-A0A7Y6PR63-F1-model_v4 MFS transporter 0.9804 17 473 GO:0016020
GO:0022857
AF-A0A7W7SKU0-F1-model_v4 EmrB/QacA subfamily drug resistance transporter 0.9764 6 470 GO:0005886
GO:0022857
AF-A0A538K487-F1-model_v4 DHA2 family efflux MFS transporter permease subunit 0.9715 11 364 GO:0005886
GO:0022857

Feature Viewer

pLDDT pTM Quality
87.03 0.85 High
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Predicted Structure (AlphaFold2)

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