F215145

General Info

Members Datasets Scaffolds Average Seq Length
152 106 304 317

Family's Representative Sequence

Representative Sequence 3300045976|Ga0466967_0250999|Ga0466967_0250999_459_1541
Length 360
Sequence MSSGARAGQRDVITLAERPRRAVASRAVTDSTIAVRPGGAELERRLEQYRPELTAHCYRMLASPFEAEDAVQETMLRAWRSYDRFEGRAALRSWMYRIATNVCFDMLNGRKRRPRPMDLGPAREPDAANLNVPDVAWLEPLPLAVAEPSDADPAEVALSRETLRLAFVAALQHLPPRQRAVLILCEVLRWKASEVAELLETSTASVNSALQRARATLSDADVSITDASSSPKPLDESDRELLARYVEAFEAYDIDRLTDLIREDATQSMPPFDLWLSGRDDIFTWWFGPGIGCKGSKLVPVQGANGSPAWGQYKPSPDGGYEPWAVVVVELSEGRIGELTFFLDTEKLFPLFGLPPRLDA

Samples

Sample ID Description Type Environment
1 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
4 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
5 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
6 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
7 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
8 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
9 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
10 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
11 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
12 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
13 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
14 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
15 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
16 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
17 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
18 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
19 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
20 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
21 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
22 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
23 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
24 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
25 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
26 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
27 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
28 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
35 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
37 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
38 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
39 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
40 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
41 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
42 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
43 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
44 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
45 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
46 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
47 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
48 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
49 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
50 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
51 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
52 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
53 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
54 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
55 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
56 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
57 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
58 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
59 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
60 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
61 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
62 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
63 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
64 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
65 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
66 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
67 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
68 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
69 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
70 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
71 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
72 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
73 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
74 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
75 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
76 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
77 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
78 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
79 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
80 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
81 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
82 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
83 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
84 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
85 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
87 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
88 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
89 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
90 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
91 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
92 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
93 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
94 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
95 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
96 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
97 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
98 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
99 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
100 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
101 2551306166 Nocardia tenerifensis NBRC 101015 Isolate Rhizosphere
102 2616644814 Streptomyces mirabilis OK461 Isolate Rhizosphere
103 2863067949 Saccharopolyspora phatthalungensis DSM 45584 (Annotation) (version 2) Isolate Rhizosphere
104 2867369537 Streptomyces sp. Z26 Isolate Unclassified
105 2902799365 Mycolicibacterium sp. P1-5 Isolate Unclassified
106 2919713450 Nocardia kruczakiae 4272 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.05
Metatranscriptomes 0
Isolates 3.95

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0.66
Rhizosphere 89.47
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0466967_0250999 3300045976 Bacteria 1690
2 Ga0070658_10005411 3300005327 Bacteria 10358
3 Ga0070682_100109220 3300005337 Bacteria 1840
4 Ga0070660_100036363 3300005339 Bacteria 3730
5 Ga0070714_100020106 3300005435 Bacteria 5448
6 Ga0070708_100016952 3300005445 Bacteria 6060
7 Ga0070706_100000322 3300005467 Bacteria 58386
8 Ga0070707_100004231 3300005468 Bacteria 13435
9 Ga0070698_100011272 3300005471 Bacteria 9493
10 Ga0070698_100034825 3300005471 Bacteria 5209
11 Ga0070698_100051715 3300005471 Bacteria 4183
12 Ga0070698_100064505 3300005471 Bacteria 3690
13 Ga0070699_100000222 3300005518 Bacteria 56552
14 Ga0070699_100018122 3300005518 Bacteria 6049
15 Ga0070679_100048558 3300005530 Bacteria 4228
16 Ga0068855_100000020 3300005563 Bacteria 205600
17 Ga0068856_100200975 3300005614 Bacteria 2007
18 Ga0081455_10006757 3300005937 Bacteria 12242
19 Ga0081538_10000848 3300005981 Bacteria 33003
20 Ga0081539_10003435 3300005985 Bacteria 19473
21 Ga0070717_10000473 3300006028 Bacteria 25596
22 Ga0070717_10066166 3300006028 Bacteria 3005
23 Ga0070717_10119593 3300006028 Bacteria 2255
24 Ga0075434_100081634 3300006871 Bacteria 3230
25 Ga0099794_10000268 3300007265 Bacteria 18058
26 Ga0105249_10063708 3300009553 Bacteria 3387
27 Ga0105239_10321954 3300010375 Bacteria 1743
28 Ga0157370_10201845 3300013104 Bacteria 1844
29 Ga0157379_10053356 3300014968 Bacteria 3611
30 Ga0163161_10028127 3300017792 Bacteria 3990
31 Ga0213874_10003838 3300021377 Bacteria 3377
32 Ga0213876_10039300 3300021384 Bacteria 2500
33 Ga0213876_10151041 3300021384 Bacteria 1235
34 Ga0213875_10108687 3300021388 Bacteria 1294
35 Ga0207705_10107066 3300025909 Bacteria 2062
36 Ga0207705_10189777 3300025909 Bacteria 1553
37 Ga0207684_10000438 3300025910 Bacteria 55281
38 Ga0207657_10049130 3300025919 Bacteria 3679
39 Ga0207652_10030836 3300025921 Bacteria 4495
40 Ga0207646_10026596 3300025922 Bacteria 5279
41 Ga0207664_10112820 3300025929 Bacteria 2263
42 Ga0207667_10000258 3300025949 Bacteria 74576
43 Ga0209588_1000042 3300027671 Bacteria 59013
44 Ga0307406_10116523 3300031901 Bacteria 1849
45 Ga0307416_100317671 3300032002 Bacteria 1558
46 Ga0373945_0011835 3300035116 Bacteria 2890
47 Ga0373943_0003423 3300035170 Bacteria 7229
48 Ga0373935_0065254 3300035692 Bacteria 2336
49 Ga0373925_0209871 3300037068 Bacteria 1551
50 Ga0395899_0001410 3300037312 Bacteria 20607
51 Ga0395899_0034223 3300037312 Bacteria 3814
52 Ga0395900_0004398 3300037418 Bacteria 14943
53 Ga0395900_0006362 3300037418 Bacteria 12311
54 Ga0395900_0030800 3300037418 Bacteria 5509
55 Ga0395900_0081691 3300037418 Bacteria 3320
56 Ga0395900_0090806 3300037418 Bacteria 3139
57 Ga0395900_0227811 3300037418 Bacteria 1876
58 Ga0395898_0011793 3300037466 Bacteria 9060
59 Ga0395898_0018815 3300037466 Bacteria 7036
60 Ga0395898_0126911 3300037466 Bacteria 2444
61 Ga0395898_0469428 3300037466 Bacteria 1198
62 Ga0395905_0006815 3300037471 Bacteria 11439
63 Ga0395905_0055737 3300037471 Bacteria 3699
64 Ga0395905_0064124 3300037471 Bacteria 3437
65 Ga0395905_0222339 3300037471 Bacteria 1767
66 Ga0436364_0801814 3300037853 Bacteria 17054
67 Ga0395901_0010461 3300038443 Bacteria 9397
68 Ga0395901_0016470 3300038443 Bacteria 7531
69 Ga0395901_0032039 3300038443 Bacteria 5423
70 Ga0395901_0176739 3300038443 Bacteria 2239
71 Ga0395901_0224950 3300038443 Bacteria 1960
72 Ga0436365_0029035 3300039437 Bacteria 1592
73 Ga0436365_0673611 3300039437 Bacteria 6342
74 Ga0436365_1484549 3300039437 Bacteria 2933
75 Ga0436365_1901512 3300039437 Bacteria 29147
76 Ga0436363_0383920 3300039450 Bacteria 1168
77 Ga0436363_0454374 3300039450 Bacteria 6037
78 Ga0436363_0539423 3300039450 Bacteria 1559
79 Ga0436363_0680070 3300039450 Bacteria 1260
80 Ga0466972_0176249 3300044658 Bacteria 1003
81 Ga0466966_0093618 3300044684 Bacteria 1863
82 Ga0466966_0300505 3300044684 Bacteria 965
83 Ga0466961_0158761 3300044693 Bacteria 1410
84 Ga0466961_0318173 3300044693 Bacteria 949
85 Ga0466963_0030664 3300044694 Bacteria 3471
86 Ga0466963_0251459 3300044694 Bacteria 1240
87 Ga0466968_0072240 3300044735 Bacteria 1504
88 Ga0466970_0004052 3300044765 Bacteria 7194
89 Ga0466960_0026840 3300044901 Bacteria 2620
90 Ga0466959_0027173 3300045049 Bacteria 4245
91 Ga0466959_0061815 3300045049 Bacteria 2723
92 Ga0466959_0170551 3300045049 Bacteria 1526
93 Ga0451576_0080018 3300045051 Bacteria 3400
94 Ga0466958_0018164 3300045836 Bacteria 4077
95 Ga0466958_0019257 3300045836 Bacteria 3972
96 Ga0466958_0021741 3300045836 Bacteria 3752
97 Ga0466958_0025444 3300045836 Bacteria 3491
98 Ga0466958_0260638 3300045836 Bacteria 1110
99 Ga0466967_0121416 3300045976 Bacteria 2415
100 Ga0466967_0163341 3300045976 Bacteria 2092
101 Ga0495603_0010685 3300046455 Bacteria 5566
102 Ga0495629_0301432 3300046459 Bacteria 1097
103 Ga0495651_0035829 3300046462 Bacteria 3863
104 Ga0495650_0000049 3300046471 Bacteria 325092
105 Ga0495582_0045625 3300046473 Bacteria 2414
106 Ga0495608_0100033 3300046511 Bacteria 1870
107 Ga0495652_0100324 3300046529 Bacteria 2348
108 Ga0495640_0007283 3300046533 Bacteria 8716
109 Ga0495634_0056009 3300046642 Bacteria 2636
110 Ga0495588_0044617 3300046674 Bacteria 2271
111 Ga0495657_0048840 3300046675 Bacteria 2853
112 Ga0495657_0138434 3300046675 Bacteria 1519
113 Ga0495613_0007894 3300046689 Bacteria 7915
114 Ga0495581_0036253 3300047315 Bacteria 2854
115 Ga0495604_0042859 3300047317 Bacteria 3544
116 Ga0495676_0074664 3300047321 Bacteria 2595
117 Ga0495593_0139814 3300047673 Bacteria 1227
118 Ga0495614_0046881 3300048089 Bacteria 1853
119 Ga0496112_0003198 3300048915 Bacteria 13478
120 Ga0501031_0013546 3300049568 Bacteria 5313
121 Ga0501032_0011739 3300049569 Bacteria 6281
122 Ga0501033_0051015 3300049570 Bacteria 3067
123 Ga0501037_0028946 3300049573 Bacteria 4091
124 Ga0501038_0043165 3300049574 Bacteria 3922
125 Ga0501039_0020791 3300049575 Bacteria 5031
126 Ga0501042_0016641 3300049578 Bacteria 5053
127 Ga0501043_0047527 3300049579 Bacteria 3374
128 Ga0501046_0012244 3300049580 Bacteria 7310
129 Ga0501067_0020417 3300049583 Bacteria 3666
130 Ga0501067_0111872 3300049583 Bacteria 1518
131 Ga0501069_0012095 3300049585 Bacteria 4583
132 Ga0501069_0014368 3300049585 Bacteria 4232
133 Ga0501071_0083946 3300049587 Bacteria 2334
134 Ga0501072_0010074 3300049588 Bacteria 7192
135 Ga0501073_0010820 3300049589 Bacteria 6681
136 Ga0501074_0014340 3300049590 Bacteria 5765
137 Ga0501079_0138566 3300049741 Bacteria 1895
138 Ga0501079_0170890 3300049741 Bacteria 1695
139 Ga0501044_0195098 3300049823 Bacteria 1985
140 nmdc:mga08y16_517618_c1 3300050511 Bacteria 1210
141 nmdc:mga0n895_320284_c1 3300050512 Bacteria 1571
142 nmdc:mga0n895_35021_c1 3300050512 Bacteria 4837
143 nmdc:mga0rr50_492347_c1 3300050513 Bacteria 1042
144 Ga0495655_0004500 3300053083 Bacteria 2387
145 Ga0501084_0125680 3300054114 Bacteria 2158
146 Ga0501082_0021895 3300060353 Bacteria 5510
147 2552105705 2551306166 Bacteria 9731570
148 2616703075 2616644814 Bacteria 11555299
149 2863075414 2863067949 Bacteria 8541735
150 2867370719 2867369537 Bacteria 6501581
151 2902802385 2902799365 Bacteria 5419524
152 2919714239 2919713450 Bacteria 7431245
153 Ga0466967_0250999
154 Ga0070658_10005411
155 Ga0070682_100109220
156 Ga0070660_100036363
157 Ga0070714_100020106
158 Ga0070708_100016952
159 Ga0070706_100000322
160 Ga0070707_100004231
161 Ga0070698_100011272
162 Ga0070698_100034825
163 Ga0070698_100051715
164 Ga0070698_100064505
165 Ga0070699_100000222
166 Ga0070699_100018122
167 Ga0070679_100048558
168 Ga0068855_100000020
169 Ga0068856_100200975
170 Ga0081455_10006757
171 Ga0081538_10000848
172 Ga0081539_10003435
173 Ga0070717_10000473
174 Ga0070717_10066166
175 Ga0070717_10119593
176 Ga0075434_100081634
177 Ga0099794_10000268
178 Ga0105249_10063708
179 Ga0105239_10321954
180 Ga0157370_10201845
181 Ga0157379_10053356
182 Ga0163161_10028127
183 Ga0213874_10003838
184 Ga0213876_10039300
185 Ga0213876_10151041
186 Ga0213875_10108687
187 Ga0207705_10107066
188 Ga0207705_10189777
189 Ga0207684_10000438
190 Ga0207657_10049130
191 Ga0207652_10030836
192 Ga0207646_10026596
193 Ga0207664_10112820
194 Ga0207667_10000258
195 Ga0209588_1000042
196 Ga0307406_10116523
197 Ga0307416_100317671
198 Ga0373945_0011835
199 Ga0373943_0003423
200 Ga0373935_0065254
201 Ga0373925_0209871
202 Ga0395899_0001410
203 Ga0395899_0034223
204 Ga0395900_0004398
205 Ga0395900_0006362
206 Ga0395900_0030800
207 Ga0395900_0081691
208 Ga0395900_0090806
209 Ga0395900_0227811
210 Ga0395898_0011793
211 Ga0395898_0018815
212 Ga0395898_0126911
213 Ga0395898_0469428
214 Ga0395905_0006815
215 Ga0395905_0055737
216 Ga0395905_0064124
217 Ga0395905_0222339
218 Ga0436364_0801814
219 Ga0395901_0010461
220 Ga0395901_0016470
221 Ga0395901_0032039
222 Ga0395901_0176739
223 Ga0395901_0224950
224 Ga0436365_0029035
225 Ga0436365_0673611
226 Ga0436365_1484549
227 Ga0436365_1901512
228 Ga0436363_0383920
229 Ga0436363_0454374
230 Ga0436363_0539423
231 Ga0436363_0680070
232 Ga0466972_0176249
233 Ga0466966_0093618
234 Ga0466966_0300505
235 Ga0466961_0158761
236 Ga0466961_0318173
237 Ga0466963_0030664
238 Ga0466963_0251459
239 Ga0466968_0072240
240 Ga0466970_0004052
241 Ga0466960_0026840
242 Ga0466959_0027173
243 Ga0466959_0061815
244 Ga0466959_0170551
245 Ga0451576_0080018
246 Ga0466958_0018164
247 Ga0466958_0019257
248 Ga0466958_0021741
249 Ga0466958_0025444
250 Ga0466958_0260638
251 Ga0466967_0121416
252 Ga0466967_0163341
253 Ga0495603_0010685
254 Ga0495629_0301432
255 Ga0495651_0035829
256 Ga0495650_0000049
257 Ga0495582_0045625
258 Ga0495608_0100033
259 Ga0495652_0100324
260 Ga0495640_0007283
261 Ga0495634_0056009
262 Ga0495588_0044617
263 Ga0495657_0048840
264 Ga0495657_0138434
265 Ga0495613_0007894
266 Ga0495581_0036253
267 Ga0495604_0042859
268 Ga0495676_0074664
269 Ga0495593_0139814
270 Ga0495614_0046881
271 Ga0496112_0003198
272 Ga0501031_0013546
273 Ga0501032_0011739
274 Ga0501033_0051015
275 Ga0501037_0028946
276 Ga0501038_0043165
277 Ga0501039_0020791
278 Ga0501042_0016641
279 Ga0501043_0047527
280 Ga0501046_0012244
281 Ga0501067_0020417
282 Ga0501067_0111872
283 Ga0501069_0012095
284 Ga0501069_0014368
285 Ga0501071_0083946
286 Ga0501072_0010074
287 Ga0501073_0010820
288 Ga0501074_0014340
289 Ga0501079_0138566
290 Ga0501079_0170890
291 Ga0501044_0195098
292 nmdc:mga08y16_517618_c1
293 nmdc:mga0n895_320284_c1
294 nmdc:mga0n895_35021_c1
295 nmdc:mga0rr50_492347_c1
296 Ga0495655_0004500
297 Ga0501084_0125680
298 Ga0501082_0021895
299 2552105705
300 2616703075
301 2863075414
302 2867370719
303 2902802385
304 2919714239

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04542

Sigma70_r2

Sigma-70 region 2

46

113

0.97

PF08281

Sigma70_r4_2

Sigma-70, region 4

164

217

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
2o8x-assembly1.cif.gz_A "crystal structure of the ""-35 element"" promoter recognition domain of mycobacterium tuberculosis sigc" 0.9762 137 185
2o8x-assembly1.cif.gz_B "crystal structure of the ""-35 element"" promoter recognition domain of mycobacterium tuberculosis sigc" 0.9709 137 184
3vfz-assembly3.cif.gz_A crystal structure of -35 promoter binding domain of sigd of mycobacterium tuberculosis 0.969 137 186
5fgm-assembly1.cif.gz_A streptomyces coelicolor sigr region 4 0.9652 137 186
6eo3-assembly1.cif.gz_A conformational dynamism for dna interaction in salmonella typhimurium rcsb response regulator. s207c p212121 0.9619 141 185
ID Description Score Start End Superfamily
af_P03030_3_92_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9919 158 185 1.10.10.10
af_P9WGG5_46_131_1.10.1740.10 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.9905 10 81 1.10.1740.10
2o8xA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9762 137 185 1.10.10.10
2o8xB00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9709 137 184 1.10.10.10
3vfzA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.969 137 186 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A7W0QG17-F1-model_v4 Nuclear transport factor 2 family protein 0.9854 195 319
AF-A0A538IV49-F1-model_v4 RNA polymerase subunit sigma-70 0.982 197 321
AF-A0A3N1GKW2-F1-model_v4 RNA polymerase sigma-70 factor (ECF subfamily) 0.9797 9 319 GO:0003677
GO:0006352
GO:0016987
AF-A0A6B3IR30-F1-model_v4 RNA polymerase subunit sigma-70 0.9797 229 311
AF-A0A1D2IAP8-F1-model_v4 ECF RNA polymerase sigma factor SigG 0.9793 10 321 GO:0003677
GO:0006352
GO:0016987

Map