F214797

General Info

Members Datasets Scaffolds Average Seq Length
152 109 304 495

Family's Representative Sequence

Representative Sequence 3300031903|Ga0307407_10009668|Ga0307407_100096684
Length 580
Sequence VLSATLAIEIRPAEAGDAGGRAAPAPPVAERSARSKIGAGAVHPPLPIRGVHDDHFARRMRSPASPQLLALVSVDRSSPAPLHRQIYDRMRRAILEGMLRAGQRVPSTRTLAAELGVSRLPVLTAYEQLLHEGYLTGRTGSGTFVSAGLPEETLQPGPARAPRGVRPAARAPHPRDEGGLRPFRVSLPALDAFPHALWARLVARHAHRLAPTHMAYGDPAGLGALRSAIAEHLRTARAVRCEAEQVLVVSGSQAALRLCASVLLARGDLVAVEEPGYPGARAALAMGGAEVAPVPVDAEGMDLGALHALGPRVRAAYVTPSHHYPLGASTSAARRLALLEWAARRGAYVLEDDYDSEYRYVSRPLGAMQGMDAEGRVVYVGTFSKVLFPALRVGYLVVPPALWDAFVAAREALDIFSPTLYQLALADFLREGHFARHLRRMRAVYARRREALLDGLSRHCGELLALHNADAGLHAATLLPSGVSDVAVVRRMEARGLTATPLSSCYLGPALRQGLLLGFGGSDERALDAATRTLGELLRDARDAHGRAAAAARPDATRGPTPATLSGPEREAAPRAARPR

Samples

Sample ID Description Type Environment
1 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
2 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
3 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
6 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
7 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
8 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
9 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
10 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
11 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
12 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
13 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
14 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
15 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
16 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
17 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
18 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
19 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
20 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
21 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
22 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
23 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
24 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
25 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
26 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
27 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
28 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
29 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
30 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
31 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
32 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
33 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
34 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
35 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
36 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
37 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
38 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
39 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
40 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
41 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
42 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
56 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
57 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
58 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
59 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
60 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
61 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
62 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
63 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
64 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
65 3300042133 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB1023D_E14_070716_134 Metagenome Rhizosphere
66 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
67 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
68 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
69 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
70 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
71 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
72 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
73 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
74 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
75 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
76 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
77 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
78 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
79 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
80 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
81 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
82 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
83 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
84 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
85 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
86 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
87 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
88 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
89 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
90 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
91 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
93 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
94 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
95 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
96 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
98 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
99 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
100 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
101 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
102 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
103 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
104 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
105 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
106 2643221573 Lysobacter sp. Root604 Isolate Unclassified
107 2643221720 Lysobacter sp. Root916 Isolate Unclassified
108 2643221728 Lysobacter sp. Root983 Isolate Unclassified
109 2821443989 Inquilinus ginsengisoli 584 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 96.71
Metatranscriptomes 0.66
Isolates 2.63

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.61
Nodule 0
Rhizoplane 4.61
Rhizosphere 86.18
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307407_10009668 3300031903 Bacteria 4504
2 JGI25151J46595_10000926 3300003187 Bacteria 22804
3 JGI25160J50197_1015649 3300003354 Bacteria 2482
4 Ga0070658_10058688 3300005327 Bacteria 3132
5 Ga0070683_100011442 3300005329 Bacteria 7671
6 Ga0070680_100023507 3300005336 Bacteria 4916
7 Ga0070682_100030469 3300005337 Bacteria 3257
8 Ga0070691_10050933 3300005341 Bacteria 1976
9 Ga0070691_10074254 3300005341 Bacteria 1654
10 Ga0070687_100000804 3300005343 Bacteria 10448
11 Ga0070692_10015412 3300005345 Bacteria 3616
12 Ga0070668_100035826 3300005347 Bacteria 3786
13 Ga0070663_100006425 3300005455 Bacteria 7069
14 Ga0070681_10008655 3300005458 Bacteria 9980
15 Ga0070699_100002371 3300005518 Bacteria 16899
16 Ga0070679_100001907 3300005530 Bacteria 18713
17 Ga0070679_100021509 3300005530 Bacteria 6299
18 Ga0070679_100051677 3300005530 Bacteria 4093
19 Ga0070679_100068083 3300005530 Bacteria 3551
20 Ga0070684_100026431 3300005535 Bacteria 4890
21 Ga0070693_100090450 3300005547 Bacteria 1844
22 Ga0070664_100017323 3300005564 Bacteria 5915
23 Ga0068854_100012547 3300005578 Bacteria 5551
24 Ga0068854_100037369 3300005578 Bacteria 3408
25 Ga0068856_100000562 3300005614 Bacteria 40765
26 Ga0068856_100269654 3300005614 Bacteria 1718
27 Ga0068852_100055763 3300005616 Bacteria 3412
28 Ga0068864_100135228 3300005618 Bacteria 2219
29 Ga0068861_100045829 3300005719 Bacteria 3295
30 Ga0075428_100205493 3300006844 Bacteria 2128
31 Ga0075428_100206895 3300006844 Bacteria 2121
32 Ga0075430_100180448 3300006846 Bacteria 1756
33 Ga0075431_100003134 3300006847 Bacteria 15996
34 Ga0075431_100053247 3300006847 Bacteria 4173
35 Ga0075434_100067478 3300006871 Bacteria 3563
36 Ga0075429_100000195 3300006880 Bacteria 40131
37 Ga0075429_100061868 3300006880 Bacteria 3262
38 Ga0105245_10054452 3300009098 Bacteria 3593
39 Ga0114129_10153448 3300009147 Bacteria 3151
40 Ga0105238_10023950 3300009551 Bacteria 6223
41 Ga0157371_10055833 3300013102 Bacteria 2802
42 Ga0157370_10030289 3300013104 Bacteria 5303
43 Ga0157369_10051761 3300013105 Bacteria 4444
44 Ga0157369_10201963 3300013105 Bacteria 2086
45 Ga0157372_10004702 3300013307 Bacteria 14498
46 Ga0157372_10262229 3300013307 Bacteria 2007
47 Ga0206353_10266376 3300020082 Bacteria 2413
48 Ga0209026_1000822 3300025250 Bacteria 16605
49 Ga0209130_1000600 3300025284 Bacteria 34913
50 Ga0209025_1000192 3300025294 Bacteria 150108
51 Ga0209758_1002902 3300025297 Bacteria 16549
52 Ga0207426_1000301 3300025302 Bacteria 96798
53 Ga0207647_10015071 3300025904 Bacteria 5312
54 Ga0207705_10001018 3300025909 Bacteria 22717
55 Ga0207705_10002545 3300025909 Bacteria 14043
56 Ga0207705_10006297 3300025909 Bacteria 8811
57 Ga0207707_10045146 3300025912 Bacteria 3840
58 Ga0207660_10003385 3300025917 Bacteria 10396
59 Ga0207657_10022112 3300025919 Bacteria 5967
60 Ga0207657_10078379 3300025919 Bacteria 2782
61 Ga0207657_10088857 3300025919 Bacteria 2582
62 Ga0207652_10000415 3300025921 Bacteria 44199
63 Ga0207652_10023721 3300025921 Bacteria 5085
64 Ga0207652_10035373 3300025921 Bacteria 4215
65 Ga0207652_10130800 3300025921 Bacteria 2238
66 Ga0207690_10124844 3300025932 Bacteria 1875
67 Ga0207661_10036440 3300025944 Bacteria 3840
68 Ga0207667_10011975 3300025949 Bacteria 10041
69 Ga0207667_10051788 3300025949 Bacteria 4326
70 Ga0207668_10028937 3300025972 Bacteria 3627
71 Ga0207640_10007761 3300025981 Bacteria 5925
72 Ga0207640_10063821 3300025981 Bacteria 2449
73 Ga0207678_10003105 3300026067 Bacteria 15045
74 Ga0207678_10019802 3300026067 Bacteria 5918
75 Ga0207678_10158544 3300026067 Bacteria 1933
76 Ga0207702_10000580 3300026078 Bacteria 40765
77 Ga0307513_10019766 3300031456 Bacteria 8006
78 Ga0307513_10080899 3300031456 Bacteria 3349
79 Ga0307405_10007091 3300031731 Bacteria 5571
80 Ga0307405_10023346 3300031731 Bacteria 3515
81 Ga0307413_10125215 3300031824 Bacteria 1749
82 Ga0307410_10004257 3300031852 Bacteria 7365
83 Ga0307406_10022730 3300031901 Bacteria 3723
84 Ga0307412_10038253 3300031911 Bacteria 3088
85 Ga0307409_100043292 3300031995 Bacteria 3379
86 Ga0307409_100049296 3300031995 Bacteria 3210
87 Ga0307416_100002930 3300032002 Bacteria 9943
88 Ga0307416_100046680 3300032002 Bacteria 3421
89 Ga0307411_10014721 3300032005 Bacteria 4364
90 Ga0307415_100016750 3300032126 Bacteria 4378
91 Ga0307415_100034858 3300032126 Bacteria 3281
92 Ga0307415_100087677 3300032126 Bacteria 2243
93 Ga0307415_100087697 3300032126 Bacteria 2243
94 Ga0450896_000390 3300042133 Bacteria 4404
95 Ga0450918_008328 3300042531 Bacteria 1820
96 Ga0450918_009292 3300042531 Bacteria 1726
97 Ga0466966_0076757 3300044684 Bacteria 2086
98 Ga0495638_0010703 3300046460 Bacteria 6351
99 Ga0495582_0080343 3300046473 Bacteria 1810
100 Ga0495594_0011262 3300046499 Bacteria 4645
101 Ga0495666_0003276 3300046526 Bacteria 8171
102 Ga0495586_0010141 3300046535 Bacteria 5014
103 Ga0495634_0006609 3300046642 Bacteria 8795
104 Ga0495658_0051542 3300046683 Bacteria 2331
105 Ga0495674_0025602 3300047319 Bacteria 5407
106 Ga0495680_0012584 3300047322 Bacteria 7435
107 Ga0496106_0121383 3300048909 Bacteria 2043
108 Ga0496108_0013871 3300048911 Bacteria 6573
109 Ga0496109_0002813 3300048912 Bacteria 14569
110 Ga0496110_0055930 3300048913 Bacteria 3472
111 Ga0496111_0034067 3300048914 Bacteria 3635
112 Ga0496112_0097490 3300048915 Bacteria 2910
113 Ga0496113_0004891 3300048916 Bacteria 8300
114 Ga0501031_0033001 3300049568 Bacteria 3376
115 Ga0501033_0058041 3300049570 Bacteria 2859
116 Ga0501039_0104522 3300049575 Bacteria 2211
117 Ga0501040_0084506 3300049576 Bacteria 2202
118 Ga0501040_0168302 3300049576 Bacteria 1551
119 Ga0501041_0043653 3300049577 Bacteria 2725
120 Ga0501042_0087668 3300049578 Bacteria 2233
121 Ga0501042_0160063 3300049578 Bacteria 1624
122 Ga0501043_0122076 3300049579 Bacteria 2043
123 Ga0501046_0024980 3300049580 Bacteria 4894
124 Ga0501076_0031275 3300049592 Bacteria 4150
125 Ga0501076_0105753 3300049592 Bacteria 2271
126 Ga0501077_0012673 3300049593 Bacteria 5280
127 Ga0501077_0031293 3300049593 Bacteria 3385
128 Ga0501077_0038199 3300049593 Bacteria 3056
129 Ga0501079_0029296 3300049741 Bacteria 4227
130 Ga0501079_0035074 3300049741 Bacteria 3860
131 Ga0501083_0022661 3300049744 Bacteria 4358
132 Ga0501035_0162946 3300049822 Bacteria 1929
133 Ga0501044_0006044 3300049823 Bacteria 13361
134 Ga0501044_0065866 3300049823 Bacteria 3694
135 Ga0501045_0144642 3300049824 Bacteria 1768
136 nmdc:mga05p37_73951_c1 3300050507 Bacteria 4194
137 nmdc:mga09592_1407_c1 3300050508 Bacteria 19265
138 nmdc:mga09592_51230_c1 3300050508 Bacteria 3482
139 nmdc:mga0qj67_57138_c1 3300050509 Bacteria 3093
140 nmdc:mga06r32_286_c1 3300050510 Bacteria 41965
141 nmdc:mga06r32_3606_c1 3300050510 Bacteria 13817
142 nmdc:mga06r32_56275_c1 3300050510 Bacteria 3775
143 nmdc:mga06r32_95860_c1 3300050510 Bacteria 2904
144 Ga0500616_0003978 3300053153 Bacteria 10818
145 Ga0501084_0058466 3300054114 Bacteria 3226
146 Ga0501084_0104803 3300054114 Bacteria 2375
147 Ga0501084_0178629 3300054114 Bacteria 1792
148 Ga0501082_0121559 3300060353 Bacteria 2263
149 2643881813 2643221573 Bacteria 4784121
150 2644663029 2643221720 Bacteria 4694283
151 2644699815 2643221728 Bacteria 4797149
152 2821444415 2821443989 Bacteria 7658172
153 Ga0307407_10009668
154 JGI25151J46595_10000926
155 JGI25160J50197_1015649
156 Ga0070658_10058688
157 Ga0070683_100011442
158 Ga0070680_100023507
159 Ga0070682_100030469
160 Ga0070691_10050933
161 Ga0070691_10074254
162 Ga0070687_100000804
163 Ga0070692_10015412
164 Ga0070668_100035826
165 Ga0070663_100006425
166 Ga0070681_10008655
167 Ga0070699_100002371
168 Ga0070679_100001907
169 Ga0070679_100021509
170 Ga0070679_100051677
171 Ga0070679_100068083
172 Ga0070684_100026431
173 Ga0070693_100090450
174 Ga0070664_100017323
175 Ga0068854_100012547
176 Ga0068854_100037369
177 Ga0068856_100000562
178 Ga0068856_100269654
179 Ga0068852_100055763
180 Ga0068864_100135228
181 Ga0068861_100045829
182 Ga0075428_100205493
183 Ga0075428_100206895
184 Ga0075430_100180448
185 Ga0075431_100003134
186 Ga0075431_100053247
187 Ga0075434_100067478
188 Ga0075429_100000195
189 Ga0075429_100061868
190 Ga0105245_10054452
191 Ga0114129_10153448
192 Ga0105238_10023950
193 Ga0157371_10055833
194 Ga0157370_10030289
195 Ga0157369_10051761
196 Ga0157369_10201963
197 Ga0157372_10004702
198 Ga0157372_10262229
199 Ga0206353_10266376
200 Ga0209026_1000822
201 Ga0209130_1000600
202 Ga0209025_1000192
203 Ga0209758_1002902
204 Ga0207426_1000301
205 Ga0207647_10015071
206 Ga0207705_10001018
207 Ga0207705_10002545
208 Ga0207705_10006297
209 Ga0207707_10045146
210 Ga0207660_10003385
211 Ga0207657_10022112
212 Ga0207657_10078379
213 Ga0207657_10088857
214 Ga0207652_10000415
215 Ga0207652_10023721
216 Ga0207652_10035373
217 Ga0207652_10130800
218 Ga0207690_10124844
219 Ga0207661_10036440
220 Ga0207667_10011975
221 Ga0207667_10051788
222 Ga0207668_10028937
223 Ga0207640_10007761
224 Ga0207640_10063821
225 Ga0207678_10003105
226 Ga0207678_10019802
227 Ga0207678_10158544
228 Ga0207702_10000580
229 Ga0307513_10019766
230 Ga0307513_10080899
231 Ga0307405_10007091
232 Ga0307405_10023346
233 Ga0307413_10125215
234 Ga0307410_10004257
235 Ga0307406_10022730
236 Ga0307412_10038253
237 Ga0307409_100043292
238 Ga0307409_100049296
239 Ga0307416_100002930
240 Ga0307416_100046680
241 Ga0307411_10014721
242 Ga0307415_100016750
243 Ga0307415_100034858
244 Ga0307415_100087677
245 Ga0307415_100087697
246 Ga0450896_000390
247 Ga0450918_008328
248 Ga0450918_009292
249 Ga0466966_0076757
250 Ga0495638_0010703
251 Ga0495582_0080343
252 Ga0495594_0011262
253 Ga0495666_0003276
254 Ga0495586_0010141
255 Ga0495634_0006609
256 Ga0495658_0051542
257 Ga0495674_0025602
258 Ga0495680_0012584
259 Ga0496106_0121383
260 Ga0496108_0013871
261 Ga0496109_0002813
262 Ga0496110_0055930
263 Ga0496111_0034067
264 Ga0496112_0097490
265 Ga0496113_0004891
266 Ga0501031_0033001
267 Ga0501033_0058041
268 Ga0501039_0104522
269 Ga0501040_0084506
270 Ga0501040_0168302
271 Ga0501041_0043653
272 Ga0501042_0087668
273 Ga0501042_0160063
274 Ga0501043_0122076
275 Ga0501046_0024980
276 Ga0501076_0031275
277 Ga0501076_0105753
278 Ga0501077_0012673
279 Ga0501077_0031293
280 Ga0501077_0038199
281 Ga0501079_0029296
282 Ga0501079_0035074
283 Ga0501083_0022661
284 Ga0501035_0162946
285 Ga0501044_0006044
286 Ga0501044_0065866
287 Ga0501045_0144642
288 nmdc:mga05p37_73951_c1
289 nmdc:mga09592_1407_c1
290 nmdc:mga09592_51230_c1
291 nmdc:mga0qj67_57138_c1
292 nmdc:mga06r32_286_c1
293 nmdc:mga06r32_3606_c1
294 nmdc:mga06r32_56275_c1
295 nmdc:mga06r32_95860_c1
296 Ga0500616_0003978
297 Ga0501084_0058466
298 Ga0501084_0104803
299 Ga0501084_0178629
300 Ga0501082_0121559
301 2643881813
302 2644663029
303 2644699815
304 2821444415

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00392

GntR

Bacterial regulatory proteins, gntR family

82

145

0.98

PF00155

Aminotran_1_2

Aminotransferase class I and II

191

516

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
3neu-assembly1.cif.gz_A-2 the crystal structure of a functionally-unknown protein lin1836 from listeria innocua clip11262 0.9382 7 82
4ham-assembly1.cif.gz_A-2 crystal structure of transcriptional antiterminator from listeria monocytogenes egd-e 0.9374 2 82
2zc0-assembly1.cif.gz_A crystal structure of an archaeal alanine:glyoxylate aminotransferase 0.9353 111 470
7pq9-assembly7.cif.gz_KKK crystal structure of bacillus clausii pdxr at 2.8 angstroms resolution 0.9346 7 82
2ek5-assembly4.cif.gz_C crystal structure of the transcriptional factor from c.glutamicum at 2.2 angstrom resolution 0.9322 14 80
ID Description Score Start End Superfamily
af_Q2G1P1_1_44_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9656 37 80 1.10.10.10
af_Q2FWW6_10_126_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9643 13 82 1.10.10.10
af_P9WMG5_6_82_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.961 14 80 1.10.10.10
4u0vA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9568 5 80 1.10.10.10
4hamA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9557 7 80 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A4R0ZA91-F1-model_v4 GntR family transcriptional regulator 0.9793 7 81 GO:0003677
GO:0003700
AF-A0A536IC22-F1-model_v4 GntR family transcriptional regulator 0.9786 9 82 GO:0003677
GO:0003700
GO:0045892
AF-A0A7L6N6E3-F1-model_v4 UTRA domain-containing protein 0.976 6 81 GO:0003677
GO:0045892
AF-A0A7X6Q1Y8-F1-model_v4 GntR family transcriptional regulator 0.9739 6 82 GO:0003677
GO:0003700
AF-A0A6P1AR36-F1-model_v4 deleted 0.9724 6 80

Map