F214496

General Info

Members Datasets Scaffolds Average Seq Length
152 110 305 245

Family's Representative Sequence

Representative Sequence 3300025923|Ga0207681_10316780|Ga0207681_103167801
Length 270
Sequence MTSDVNGCPYTGADSWARSRGYAEVNVTTSNRSAVNGAATPTWTRRPTNLAQAITAELVTRIVQGAHPSGTPLPPEPVLCETFSVSRTVIREAVKILQEKGLVQVRQGAGTMVNPPARWDMLDELVLAATIAEDDGLEVLDDVVATRRVLESDMANVAARLAAPAAIERMDRLAYEEQDRAFHDTIMQASGNRIARAVVRSLESQVINIARYTGRTERALCEASNRGHRLIHERIAAHDPDGAADAMFTHITDAWLVRRSGPDDPVRLHR

Samples

Sample ID Description Type Environment
1 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
4 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
5 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
6 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
7 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
8 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
9 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
10 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
11 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
12 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
13 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
14 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
15 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
16 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
17 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
18 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
19 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
20 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
21 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
22 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
23 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
24 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
25 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
26 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
27 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
28 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
29 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
30 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
31 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
32 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
33 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
34 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
35 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
36 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
53 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
54 3300030733 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 2 Metagenome Rhizosphere
55 3300030734 Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 5 Metagenome Rhizosphere
56 3300030736 Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 6 Metagenome Rhizosphere
57 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
58 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
59 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
60 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
61 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
62 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
63 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
64 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
65 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
66 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
67 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
68 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
69 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
70 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
71 3300041443 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_2 MetaG Metagenome Rhizoplane
72 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
73 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
74 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
75 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
76 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
77 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
78 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
79 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
80 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
81 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
82 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
83 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
84 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
85 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
86 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
87 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
88 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
89 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
90 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
91 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
92 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
93 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
94 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
95 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
96 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
97 2751185782 Actinoplanes subtropicus NRRL B-24665 Isolate Rhizosphere
98 2758568621 Promicromonospora sukumoe SAI-064 Isolate Unclassified
99 2832004796 Micromonospora endophytica JCM 18317 Isolate Unclassified
100 2858895516 Micromonospora saelicesensis PSN13 Isolate Unclassified
101 2866065130 Micromonospora endophytica DSM 45430 Isolate Unclassified
102 2870721527 Saccharothrix ecbatanensis DSM 45486 Isolate Rhizosphere
103 2884693830 Nonomuraea phyllanthi WYY166 Isolate Unclassified
104 2895442618 Nonomuraea phyllanthi PA1-10 Isolate Unclassified
105 2929226422 Micromonospora sp. R-74116 Hybrid assembly Isolate Unclassified
106 3006425503 Streptomyces zingiberis PLAI1-29 Isolate Unclassified
107 8003314358 Amycolatopsis sp. MtRt-6 Isolate Unclassified
108 8047710418 Umezawaea endophytica DSM 103496 Isolate Unclassified
109 8055066027 Sphaerisporangium corydalis NEAU-YHS15 Isolate Unclassified
110 8056054917 Glycomyces luteolus NEAU-A15 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 89.47
Metatranscriptomes 0
Isolates 10.53

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.89
Nodule 0
Rhizoplane 1.97
Rhizosphere 73.68
Stem 0
Stem Tuber 0
Unclassified 1.32

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207681_10316780 3300025923 Bacteria 1239
2 JGI25406J46586_10000381 3300003203 Bacteria 20344
3 JGI25406J46586_10005176 3300003203 Bacteria 6050
4 rootH1_10079737 3300003316 Bacteria 2545
5 rootH1_10079737 3300003323 Bacteria 9309
6 rootH2_10040239 3300003320 Bacteria 4719
7 rootH2_10042213 3300003320 Bacteria 1638
8 rootH2_10140908 3300003320 Bacteria 4552
9 rootL2_10031250 3300003322 Bacteria 11319
10 rootL2_10071243 3300003322 Bacteria 2804
11 Ga0070676_10576742 3300005328 Bacteria 808
12 Ga0070683_100006068 3300005329 Bacteria 10130
13 Ga0070683_100012657 3300005329 Bacteria 7336
14 Ga0068869_100027119 3300005334 Bacteria 3992
15 Ga0070668_100000797 3300005347 Bacteria 21711
16 Ga0070668_100109197 3300005347 Bacteria 2201
17 Ga0070669_100514816 3300005353 Bacteria 994
18 Ga0070710_10000328 3300005437 Bacteria 22654
19 Ga0070710_10000829 3300005437 Bacteria 14873
20 Ga0070663_100004237 3300005455 Bacteria 8395
21 Ga0070662_100026885 3300005457 Bacteria 3989
22 Ga0070684_100003017 3300005535 Bacteria 12539
23 Ga0070684_100011287 3300005535 Bacteria 7112
24 Ga0068855_100198166 3300005563 Bacteria 2262
25 Ga0070664_100154041 3300005564 Bacteria 2030
26 Ga0070664_100261274 3300005564 Bacteria 1558
27 Ga0068857_100036443 3300005577 Bacteria 4358
28 Ga0068857_100213728 3300005577 Bacteria 1760
29 Ga0068856_100313445 3300005614 Bacteria 1586
30 Ga0068862_100414740 3300005844 Bacteria 1262
31 Ga0081539_10001051 3300005985 Bacteria 50562
32 Ga0081539_10005085 3300005985 Bacteria 13786
33 Ga0081539_10010191 3300005985 Bacteria 7696
34 Ga0081539_10011661 3300005985 Bacteria 6912
35 Ga0075365_10306999 3300006038 Bacteria 1117
36 Ga0075363_100009404 3300006048 Bacteria 4595
37 Ga0075364_10036272 3300006051 Bacteria 3187
38 Ga0075367_10090245 3300006178 Bacteria 1864
39 Ga0075370_10004050 3300006353 Bacteria 7045
40 Ga0075370_10073424 3300006353 Bacteria 1959
41 Ga0075428_100006678 3300006844 Bacteria 12835
42 Ga0075428_100195659 3300006844 Bacteria 2186
43 Ga0075430_100002364 3300006846 Bacteria 15675
44 Ga0075431_100250328 3300006847 Bacteria 1800
45 Ga0075429_100012126 3300006880 Bacteria 7469
46 Ga0068865_100367318 3300006881 Bacteria 1170
47 Ga0105240_10243000 3300009093 Bacteria 2086
48 Ga0114129_10143583 3300009147 Bacteria 3270
49 Ga0114129_10520478 3300009147 Bacteria 1551
50 Ga0105241_10117082 3300009174 Bacteria 2141
51 Ga0105237_10022947 3300009545 Bacteria 6399
52 Ga0105237_10326553 3300009545 Bacteria 1538
53 Ga0105239_11238220 3300010375 Bacteria 860
54 Ga0207692_10000067 3300025898 Bacteria 30359
55 Ga0207692_10000442 3300025898 Bacteria 14625
56 Ga0207654_10020128 3300025911 Bacteria 3532
57 Ga0207695_10194467 3300025913 Bacteria 1945
58 Ga0207671_10016058 3300025914 Bacteria 5834
59 Ga0207671_10470330 3300025914 Bacteria 1002
60 Ga0207690_10105321 3300025932 Bacteria 2022
61 Ga0207689_10045421 3300025942 Bacteria 3631
62 Ga0207661_10001868 3300025944 Bacteria 14432
63 Ga0207661_10007435 3300025944 Bacteria 7797
64 Ga0207679_10170837 3300025945 Bacteria 1790
65 Ga0207679_10283450 3300025945 Bacteria 1422
66 Ga0207667_10110319 3300025949 Bacteria 2838
67 Ga0207668_10002416 3300025972 Bacteria 10922
68 Ga0207678_10078776 3300026067 Bacteria 2822
69 Ga0207702_10774086 3300026078 Bacteria 948
70 Ga0207674_10091246 3300026116 Bacteria 3037
71 Ga0207674_10234357 3300026116 Bacteria 1783
72 Ga0207698_10269450 3300026142 Bacteria 1569
73 Ga0268265_10022538 3300028380 Bacteria 4427
74 Ga0268264_10320657 3300028381 Bacteria 1465
75 Ga0316177_1109671 3300030731 Bacteria 2662
76 Ga0316176_1071925 3300030732 Bacteria 2105
77 Ga0314311_1098837 3300030733 Bacteria 2173
78 Ga0314311_1175907 3300030733 Unclassified 1167
79 Ga0314311_1222648 3300030733 Bacteria 4814
80 Ga0316179_1041586 3300030734 Unclassified 1155
81 Ga0316180_1084044 3300030736 Bacteria 1764
82 Ga0307513_10003725 3300031456 Bacteria 20611
83 Ga0307509_10217961 3300031507 Bacteria 1725
84 Ga0307408_100103566 3300031548 Bacteria 2173
85 Ga0307405_10014233 3300031731 Bacteria 4271
86 Ga0307413_10232497 3300031824 Bacteria 1355
87 Ga0307410_10017754 3300031852 Bacteria 4281
88 Ga0307406_10035080 3300031901 Bacteria 3082
89 Ga0307407_10113019 3300031903 Bacteria 1708
90 Ga0307412_10052361 3300031911 Bacteria 2703
91 Ga0307409_100000630 3300031995 Bacteria 15504
92 Ga0307409_100046615 3300031995 Bacteria 3283
93 Ga0307409_100247268 3300031995 Bacteria 1628
94 Ga0307416_100002620 3300032002 Bacteria 10398
95 Ga0307415_100000139 3300032126 Bacteria 31946
96 Ga0307415_100274900 3300032126 Bacteria 1382
97 Ga0307415_100380522 3300032126 Bacteria 1198
98 Ga0307507_10343604 3300033179 Bacteria 882
99 Ga0439438_055581 3300041405 Bacteria 998
100 Ga0451789_0618362 3300041443 Bacteria 1458
101 Ga0451791_0371946 3300041451 Bacteria 2702
102 Ga0451797_1588897 3300041453 Bacteria 1058
103 Ga0451833_1428929 3300041491 Bacteria 1302
104 Ga0451843_0054778 3300041509 Bacteria 1689
105 Ga0451843_1355917 3300041509 Bacteria 1747
106 Ga0451853_0056768 3300041512 Bacteria 1456
107 Ga0466972_0001663 3300044658 Bacteria 10879
108 Ga0466972_0010079 3300044658 Bacteria 4749
109 Ga0466965_0001027 3300044683 Bacteria 10789
110 Ga0466965_0004295 3300044683 Bacteria 6331
111 Ga0466965_0007913 3300044683 Bacteria 4901
112 Ga0466965_0016863 3300044683 Bacteria 3484
113 Ga0466965_0043668 3300044683 Bacteria 2213
114 Ga0466965_0276831 3300044683 Bacteria 905
115 Ga0466963_0007064 3300044694 Bacteria 6685
116 Ga0466964_0143433 3300044706 Bacteria 1100
117 Ga0466964_0191067 3300044706 Bacteria 977
118 Ga0466971_0128712 3300044719 Bacteria 1174
119 Ga0466968_0079523 3300044735 Bacteria 1438
120 Ga0466968_0197808 3300044735 Bacteria 940
121 Ga0466957_0070144 3300044842 Bacteria 2166
122 Ga0466960_0000376 3300044901 Bacteria 15219
123 Ga0466958_0008863 3300045836 Bacteria 5589
124 Ga0466967_0282386 3300045976 Bacteria 1593
125 Ga0495594_0016389 3300046499 Bacteria 3904
126 Ga0495594_0100053 3300046499 Bacteria 1631
127 Ga0501047_0098738 3300049581 Bacteria 2798
128 nmdc:mga03n38_150923_c1 3300050490 Bacteria 1169
129 nmdc:mga0yw44_285236_c1 3300050492 Bacteria 1104
130 nmdc:mga0yw44_62002_c1 3300050492 Bacteria 2295
131 nmdc:mga0yw44_73094_c1 3300050492 Bacteria 2133
132 nmdc:mga07m45_79037_c1 3300050496 Bacteria 1877
133 nmdc:mga05p37_7518_c1 3300050507 Bacteria 12847
134 nmdc:mga0qj67_120870_c1 3300050509 Bacteria 2119
135 nmdc:mga06r32_44690_c1 3300050510 Bacteria 4219
136 Ga0500562_012306 3300053108 Bacteria 2176
137 Ga0466962_0071509 3300061719 Bacteria 1657
138 2753270120 2751185782 Bacteria 11227053
139 2760623759 2758568621 Bacteria 5967089
140 2832007744 2832004796 Bacteria 6538017
141 2858898066 2858895516 Bacteria 7378898
142 2866071363 2866065130 Bacteria 6518152
143 2870724854 2870721527 Bacteria 9689237
144 2884696819 2884693830 Bacteria 11273186
145 2895451583 2895442618 Bacteria 11027144
146 2929228308 2929226422 Bacteria 7248583
147 3006426727 3006425503 Bacteria 6491253
148 8003318996 8003314358 Bacteria 10575343
149 8003319313 8003314358 Bacteria 10575343
150 8047712299 8047710418 Bacteria 11023148
151 8055073729 8055066027 Bacteria 9479577
152 8056056006 8056054917 Bacteria 5736694
153 8056057609 8056054917 Bacteria 5736694
154 Ga0207681_10316780
155 JGI25406J46586_10000381
156 JGI25406J46586_10005176
157 rootH1_10079737
158 rootH2_10040239
159 rootH2_10042213
160 rootH2_10140908
161 rootL2_10031250
162 rootL2_10071243
163 Ga0070676_10576742
164 Ga0070683_100006068
165 Ga0070683_100012657
166 Ga0068869_100027119
167 Ga0070668_100000797
168 Ga0070668_100109197
169 Ga0070669_100514816
170 Ga0070710_10000328
171 Ga0070710_10000829
172 Ga0070663_100004237
173 Ga0070662_100026885
174 Ga0070684_100003017
175 Ga0070684_100011287
176 Ga0068855_100198166
177 Ga0070664_100154041
178 Ga0070664_100261274
179 Ga0068857_100036443
180 Ga0068857_100213728
181 Ga0068856_100313445
182 Ga0068862_100414740
183 Ga0081539_10001051
184 Ga0081539_10005085
185 Ga0081539_10010191
186 Ga0081539_10011661
187 Ga0075365_10306999
188 Ga0075363_100009404
189 Ga0075364_10036272
190 Ga0075367_10090245
191 Ga0075370_10004050
192 Ga0075370_10073424
193 Ga0075428_100006678
194 Ga0075428_100195659
195 Ga0075430_100002364
196 Ga0075431_100250328
197 Ga0075429_100012126
198 Ga0068865_100367318
199 Ga0105240_10243000
200 Ga0114129_10143583
201 Ga0114129_10520478
202 Ga0105241_10117082
203 Ga0105237_10022947
204 Ga0105237_10326553
205 Ga0105239_11238220
206 Ga0207692_10000067
207 Ga0207692_10000442
208 Ga0207654_10020128
209 Ga0207695_10194467
210 Ga0207671_10016058
211 Ga0207671_10470330
212 Ga0207690_10105321
213 Ga0207689_10045421
214 Ga0207661_10001868
215 Ga0207661_10007435
216 Ga0207679_10170837
217 Ga0207679_10283450
218 Ga0207667_10110319
219 Ga0207668_10002416
220 Ga0207678_10078776
221 Ga0207702_10774086
222 Ga0207674_10091246
223 Ga0207674_10234357
224 Ga0207698_10269450
225 Ga0268265_10022538
226 Ga0268264_10320657
227 Ga0316177_1109671
228 Ga0316176_1071925
229 Ga0314311_1098837
230 Ga0314311_1175907
231 Ga0314311_1222648
232 Ga0316179_1041586
233 Ga0316180_1084044
234 Ga0307513_10003725
235 Ga0307509_10217961
236 Ga0307408_100103566
237 Ga0307405_10014233
238 Ga0307413_10232497
239 Ga0307410_10017754
240 Ga0307406_10035080
241 Ga0307407_10113019
242 Ga0307412_10052361
243 Ga0307409_100000630
244 Ga0307409_100046615
245 Ga0307409_100247268
246 Ga0307416_100002620
247 Ga0307415_100000139
248 Ga0307415_100274900
249 Ga0307415_100380522
250 Ga0307507_10343604
251 Ga0439438_055581
252 Ga0451789_0618362
253 Ga0451791_0371946
254 Ga0451797_1588897
255 Ga0451833_1428929
256 Ga0451843_0054778
257 Ga0451843_1355917
258 Ga0451853_0056768
259 Ga0466972_0001663
260 Ga0466972_0010079
261 Ga0466965_0001027
262 Ga0466965_0004295
263 Ga0466965_0007913
264 Ga0466965_0016863
265 Ga0466965_0043668
266 Ga0466965_0276831
267 Ga0466963_0007064
268 Ga0466964_0143433
269 Ga0466964_0191067
270 Ga0466971_0128712
271 Ga0466968_0079523
272 Ga0466968_0197808
273 Ga0466957_0070144
274 Ga0466960_0000376
275 Ga0466958_0008863
276 Ga0466967_0282386
277 Ga0495594_0016389
278 Ga0495594_0100053
279 Ga0501047_0098738
280 nmdc:mga03n38_150923_c1
281 nmdc:mga0yw44_285236_c1
282 nmdc:mga0yw44_62002_c1
283 nmdc:mga0yw44_73094_c1
284 nmdc:mga07m45_79037_c1
285 nmdc:mga05p37_7518_c1
286 nmdc:mga0qj67_120870_c1
287 nmdc:mga06r32_44690_c1
288 Ga0500562_012306
289 Ga0466962_0071509
290 2753270120
291 2760623759
292 2832007744
293 2858898066
294 2866071363
295 2870724854
296 2884696819
297 2895451583
298 2929228308
299 3006426727
300 8003318996
301 8003319313
302 8047712299
303 8055073729
304 8056056006
305 8056057609

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00392

GntR

Bacterial regulatory proteins, gntR family

50

113

0.97

PF07729

FCD

FCD domain

142

253

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
3eet-assembly2.cif.gz_B-3 crystal structure of putative gntr-family transcriptional regulator 0.9485 32 97
4egz-assembly1.cif.gz_B crystal structure of arar(dbd) in complex with operator orr3 0.9434 32 96
5d4r-assembly1.cif.gz_A crystal structure of arar(dbd) in complex with operator ore1 0.9434 29 96
4h0e-assembly1.cif.gz_A crystal structure of mutant orr3 in complex with ntd of arar 0.9232 28 96
3eet-assembly1.cif.gz_A-2 crystal structure of putative gntr-family transcriptional regulator 0.9189 27 97
ID Description Score Start End Superfamily
af_P31475_2_79_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9963 32 97 1.10.10.10
af_P39389_1_70_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9756 32 97 1.10.10.10
af_P31460_2_70_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9745 29 97 1.10.10.10
af_P45544_5_80_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9719 32 98 1.10.10.10
af_P9WMG7_15_85_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9716 32 98 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A7U6L6Y3-F1-model_v4 deleted 0.9953 31 97
AF-A0A7W1RZB3-F1-model_v4 GntR family transcriptional regulator 0.982 31 97 GO:0003677
GO:0003700
AF-A0A2A5DSD0-F1-model_v4 HTH gntR-type domain-containing protein 0.9727 29 98 GO:0000976
GO:0003700
AF-A0A7K2H8F6-F1-model_v4 deleted 0.9706 32 98
AF-A0A0R1TXM3-F1-model_v4 Trehalose operon repressor 0.9691 31 98 GO:0003677
GO:0003700
GO:0045892

Map