F212978

General Info

Members Datasets Scaffolds Average Seq Length
151 116 302 276

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2816332139|2816509211
Length 298
Sequence QRANHGRQHGSRVWMVTGASSGFGRAITEAAVAAGDVVVATARRPQALGDLVAARPDHVEAVALDVTDAAAVDAVVADVEARYGRIDVLVNNAGHGQVGAAEETTDAELRSLFDVHVFGPAALVRAVLPGMRARRAGAIVQMSSFGGQVAYPGFSAYCATKFALEGYSEALAAEVGPLGIAVVVVEPGAFRTAFAGSGLVQSARVTEDYDATVGPTRDMITGIGGSQPGDPARAAAAILRALDADHPPLRLPLGDDAVDGILGHLDSVRAEVHAWEPVSRATGFAPEPAGAAGEAATP

Samples

Sample ID Description Type Environment
1 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
2 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
3 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
4 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
5 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
6 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
7 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
8 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
9 3300006944 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW Metagenome Nodule
10 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
11 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
12 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
13 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
14 3300015688 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_G01 Metagenome Rhizosphere
15 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
16 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
17 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
18 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
19 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
20 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
21 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
24 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
25 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
26 3300027296 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes) (version 2) Metagenome Nodule
27 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
28 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
29 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
30 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
31 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
32 3300033545 Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE4 Metagenome Unclassified
33 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
34 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
35 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
36 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
37 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
38 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
39 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
40 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
41 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
42 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
43 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
44 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
45 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
46 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
47 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
48 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
49 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
50 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
51 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
52 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
53 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
54 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
55 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
56 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
57 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
58 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
59 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
60 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
61 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
62 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
63 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
64 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
65 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
66 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
67 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
68 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
69 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
70 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
71 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
72 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
73 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
74 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
75 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
76 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
77 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
78 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
79 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
80 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
81 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
82 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
83 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
84 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
85 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
87 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
88 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
89 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
90 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
91 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
92 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
93 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
94 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
95 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
96 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
97 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
98 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
99 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
100 2816332139 Pseudonocardia kunmingensis DSM 45301 Isolate Unclassified
101 2582581313 Streptomyces mirabilis OV308 Isolate Rhizosphere
102 2643221587 Streptomyces sp. Root66D1 Isolate Unclassified
103 2643221677 Streptomyces sp. Root1304 Isolate Unclassified
104 2765235841 Pseudomonas putida AA7 Isolate Unclassified
105 2784746768 Streptomyces griseorubiginosus SAI-142 Isolate Unclassified
106 2808606448 Streptomyces sp. 193411 Isolate Unclassified
107 2862281513 Streptomyces sp. Act143 Isolate Rhizosphere
108 2889049205 Paenibacillus rhizovicinus 14171R-81 Isolate Rhizosphere
109 2947224130 Streptomyces afghaniensis W1I20 Isolate Rhizosphere
110 2954380949 Streptomyces ciscaucasicus W1I15 Isolate Rhizosphere
111 2954721474 Streptomyces sp. SAI-117 Isolate Rhizosphere
112 2954731030 Streptomyces sp. SAI-133 Isolate Rhizosphere
113 2954740390 Streptomyces sp. SAI-041 Isolate Rhizosphere
114 2954759201 Streptomyces sp. SAI-208 Isolate Rhizosphere
115 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
116 8023623736 Streptomyces sp. 111WW2 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 88.08
Metatranscriptomes 0
Isolates 11.92

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.96
Nodule 1.32
Rhizoplane 0.66
Rhizosphere 80.79
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10010609 3300003323 Bacteria 11665
2 Ga0055531_10004187 3300003794 Bacteria 8896
3 Ga0070708_100147327 3300005445 Bacteria 2187
4 Ga0068855_100009615 3300005563 Bacteria 11667
5 Ga0068855_100085736 3300005563 Bacteria 3643
6 Ga0068852_100348268 3300005616 Bacteria 1446
7 Ga0081455_10113365 3300005937 Bacteria 2150
8 Ga0081539_10152958 3300005985 Bacteria 1108
9 Ga0075370_10033615 3300006353 Bacteria 2872
10 Ga0099823_1000232 3300006944 Bacteria 31969
11 Ga0105240_10221937 3300009093 Bacteria 2201
12 Ga0105237_10131482 3300009545 Bacteria 2497
13 Ga0105239_10207283 3300010375 Bacteria 2197
14 Ga0105239_10393997 3300010375 Bacteria 1567
15 Ga0157379_10007236 3300014968 Bacteria 9601
16 Ga0183367_1002 3300015688 Bacteria 1101531
17 Ga0209673_1002324 3300025273 Bacteria 13471
18 Ga0209050_1008851 3300025298 Bacteria 5277
19 Ga0209256_1000840 3300025299 Bacteria 38531
20 Ga0209051_1005243 3300025303 Bacteria 7653
21 Ga0209257_1002054 3300025304 Bacteria 21333
22 Ga0207647_10013492 3300025904 Bacteria 5659
23 Ga0207695_10375859 3300025913 Bacteria 1307
24 Ga0207646_10052210 3300025922 Bacteria 3658
25 Ga0207667_10036625 3300025949 Bacteria 5255
26 Ga0207667_10591541 3300025949 Bacteria 1119
27 Ga0207702_10084783 3300026078 Bacteria 2760
28 Ga0207702_10431726 3300026078 Bacteria 1275
29 Ga0207698_10104955 3300026142 Bacteria 2353
30 Ga0209389_1003546 3300027296 Bacteria 12635
31 Ga0268264_10141291 3300028381 Bacteria 2148
32 Ga0265316_10029607 3300031344 Bacteria 4499
33 Ga0307513_10000163 3300031456 Bacteria 95775
34 Ga0307513_10038256 3300031456 Bacteria 5328
35 Ga0307509_10038888 3300031507 Bacteria 5186
36 Ga0265342_10059402 3300031712 Bacteria 2259
37 Ga0316214_1002602 3300033545 Bacteria 2225
38 Ga0373925_0005526 3300037068 Bacteria 9408
39 Ga0395900_0005564 3300037418 Bacteria 13190
40 Ga0395898_0001734 3300037466 Bacteria 28838
41 Ga0395905_0013045 3300037471 Bacteria 7982
42 Ga0395905_0022064 3300037471 Bacteria 6022
43 Ga0439438_021514 3300041405 Bacteria 1798
44 Ga0439449_0008574 3300042007 Bacteria 3882
45 Ga0439449_0012146 3300042007 Bacteria 3238
46 Ga0439457_038646 3300042014 Bacteria 1062
47 Ga0466965_0001059 3300044683 Bacteria 10665
48 Ga0466965_0004166 3300044683 Bacteria 6425
49 Ga0466965_0017598 3300044683 Bacteria 3418
50 Ga0466966_0002265 3300044684 Bacteria 12531
51 Ga0466966_0073479 3300044684 Bacteria 2138
52 Ga0466966_0098865 3300044684 Bacteria 1806
53 Ga0466961_0003215 3300044693 Bacteria 10166
54 Ga0466963_0008706 3300044694 Bacteria 6091
55 Ga0466963_0089231 3300044694 Bacteria 2097
56 Ga0466971_0000627 3300044719 Bacteria 14103
57 Ga0466971_0003721 3300044719 Bacteria 6526
58 Ga0466968_0005054 3300044735 Bacteria 4941
59 Ga0466970_0000439 3300044765 Bacteria 20416
60 Ga0466970_0050978 3300044765 Bacteria 2208
61 Ga0466970_0132477 3300044765 Bacteria 1370
62 Ga0466957_0002322 3300044842 Bacteria 10201
63 Ga0466957_0025568 3300044842 Bacteria 3499
64 Ga0466959_0008288 3300045049 Bacteria 7341
65 Ga0466958_0000128 3300045836 Bacteria 24979
66 Ga0466958_0087398 3300045836 Bacteria 1924
67 Ga0466967_0024598 3300045976 Bacteria 4954
68 Ga0466967_0052684 3300045976 Bacteria 3573
69 Ga0495590_0112000 3300046457 Bacteria 974
70 Ga0495629_0300679 3300046459 Bacteria 1099
71 Ga0495580_0001730 3300046472 Bacteria 19176
72 Ga0495605_0002698 3300046474 Bacteria 10867
73 Ga0495607_0161472 3300046501 Bacteria 1138
74 Ga0495583_0005306 3300046506 Bacteria 8806
75 Ga0495583_0088000 3300046506 Bacteria 1341
76 Ga0495583_0113916 3300046506 Bacteria 1143
77 Ga0495616_0086824 3300046513 Bacteria 1487
78 Ga0495620_0008385 3300046515 Bacteria 5553
79 Ga0495628_0575078 3300046516 Bacteria 807
80 Ga0495631_0001636 3300046518 Bacteria 13356
81 Ga0495643_0029804 3300046522 Bacteria 3051
82 Ga0495648_0015473 3300046524 Bacteria 5539
83 Ga0495666_0000317 3300046526 Bacteria 20937
84 Ga0495665_0068206 3300046531 Bacteria 1875
85 Ga0495633_0147646 3300046558 Bacteria 1086
86 Ga0495667_0091447 3300046559 Bacteria 1971
87 Ga0495668_0009497 3300046616 Bacteria 5969
88 Ga0495625_0002581 3300046660 Bacteria 19455
89 Ga0495588_0169033 3300046674 Bacteria 1156
90 Ga0495649_0123004 3300046694 Bacteria 1371
91 Ga0495660_0003011 3300046810 Bacteria 10509
92 Ga0495660_0117396 3300046810 Bacteria 1350
93 Ga0495604_0267818 3300047317 Bacteria 1158
94 Ga0495636_0002111 3300047318 Bacteria 7638
95 Ga0495683_0016193 3300047323 Bacteria 3872
96 Ga0495687_029126 3300047443 Bacteria 2560
97 Ga0495685_004761 3300047447 Bacteria 4401
98 Ga0495685_026188 3300047447 Bacteria 2006
99 Ga0495685_031298 3300047447 Bacteria 1829
100 Ga0495686_0076134 3300047472 Bacteria 2056
101 Ga0495602_0080920 3300048088 Bacteria 2734
102 Ga0496108_0000064 3300048911 Bacteria 118022
103 Ga0496122_0057099 3300048925 Bacteria 2903
104 Ga0496124_0003701 3300048927 Bacteria 18471
105 Ga0496124_0027445 3300048927 Bacteria 5110
106 Ga0496125_0010478 3300048928 Bacteria 9373
107 Ga0496126_0382373 3300048929 Bacteria 1145
108 Ga0501032_0054742 3300049569 Bacteria 2685
109 Ga0501032_0073052 3300049569 Bacteria 2285
110 Ga0501034_0036677 3300049571 Bacteria 4965
111 Ga0501034_0058160 3300049571 Bacteria 3886
112 Ga0501034_0220025 3300049571 Bacteria 1851
113 Ga0501036_0035986 3300049572 Bacteria 4189
114 Ga0501038_0019315 3300049574 Bacteria 6146
115 Ga0501038_0033222 3300049574 Bacteria 4545
116 Ga0501039_0082219 3300049575 Bacteria 2508
117 Ga0501039_0119180 3300049575 Bacteria 2067
118 Ga0501043_0022461 3300049579 Bacteria 4947
119 Ga0501046_0025063 3300049580 Bacteria 4886
120 Ga0501047_0045609 3300049581 Bacteria 4238
121 Ga0501070_0014352 3300049586 Bacteria 6667
122 Ga0501035_0004383 3300049822 Bacteria 13400
123 Ga0501035_0021952 3300049822 Bacteria 5865
124 Ga0501035_0100482 3300049822 Bacteria 2539
125 Ga0501044_0010124 3300049823 Bacteria 10245
126 Ga0501044_0048006 3300049823 Bacteria 4413
127 Ga0501044_0161272 3300049823 Bacteria 2219
128 Ga0501045_0262906 3300049824 Bacteria 1284
129 nmdc:mga05p37_476679_c1 3300050507 Bacteria 1438
130 Ga0500588_0000196 3300053146 Bacteria 8414
131 Ga0500616_0011212 3300053153 Bacteria 5314
132 Ga0466962_0001575 3300061719 Bacteria 10672
133 Ga0466962_0232700 3300061719 Bacteria 903
134 2816509211 2816332139 Bacteria 9138787
135 2585307087 2582581313 Bacteria 10042643
136 2643947500 2643221587 Bacteria 7586415
137 2644435192 2643221677 Bacteria 7584031
138 2765583705 2765235841 Bacteria 6137024
139 2785371190 2784746768 Bacteria 10036182
140 2809233799 2808606448 Bacteria 8656184
141 2862287427 2862281513 Bacteria 9621493
142 2889055656 2889049205 Bacteria 7524325
143 2889055911 2889049205 Bacteria 7524325
144 2947227241 2947224130 Bacteria 9938529
145 2954384298 2954380949 Bacteria 10050426
146 2954724556 2954721474 Bacteria 10456478
147 2954737262 2954731030 Bacteria 10243860
148 2954743478 2954740390 Bacteria 10229294
149 2954762434 2954759201 Bacteria 9358192
150 3006498693 3006493962 Bacteria 8825450
151 8023628913 8023623736 Bacteria 8593882
152 rootH1_10010609
153 Ga0055531_10004187
154 Ga0070708_100147327
155 Ga0068855_100009615
156 Ga0068855_100085736
157 Ga0068852_100348268
158 Ga0081455_10113365
159 Ga0081539_10152958
160 Ga0075370_10033615
161 Ga0099823_1000232
162 Ga0105240_10221937
163 Ga0105237_10131482
164 Ga0105239_10207283
165 Ga0105239_10393997
166 Ga0157379_10007236
167 Ga0183367_1002
168 Ga0209673_1002324
169 Ga0209050_1008851
170 Ga0209256_1000840
171 Ga0209051_1005243
172 Ga0209257_1002054
173 Ga0207647_10013492
174 Ga0207695_10375859
175 Ga0207646_10052210
176 Ga0207667_10036625
177 Ga0207667_10591541
178 Ga0207702_10084783
179 Ga0207702_10431726
180 Ga0207698_10104955
181 Ga0209389_1003546
182 Ga0268264_10141291
183 Ga0265316_10029607
184 Ga0307513_10000163
185 Ga0307513_10038256
186 Ga0307509_10038888
187 Ga0265342_10059402
188 Ga0316214_1002602
189 Ga0373925_0005526
190 Ga0395900_0005564
191 Ga0395898_0001734
192 Ga0395905_0013045
193 Ga0395905_0022064
194 Ga0439438_021514
195 Ga0439449_0008574
196 Ga0439449_0012146
197 Ga0439457_038646
198 Ga0466965_0001059
199 Ga0466965_0004166
200 Ga0466965_0017598
201 Ga0466966_0002265
202 Ga0466966_0073479
203 Ga0466966_0098865
204 Ga0466961_0003215
205 Ga0466963_0008706
206 Ga0466963_0089231
207 Ga0466971_0000627
208 Ga0466971_0003721
209 Ga0466968_0005054
210 Ga0466970_0000439
211 Ga0466970_0050978
212 Ga0466970_0132477
213 Ga0466957_0002322
214 Ga0466957_0025568
215 Ga0466959_0008288
216 Ga0466958_0000128
217 Ga0466958_0087398
218 Ga0466967_0024598
219 Ga0466967_0052684
220 Ga0495590_0112000
221 Ga0495629_0300679
222 Ga0495580_0001730
223 Ga0495605_0002698
224 Ga0495607_0161472
225 Ga0495583_0005306
226 Ga0495583_0088000
227 Ga0495583_0113916
228 Ga0495616_0086824
229 Ga0495620_0008385
230 Ga0495628_0575078
231 Ga0495631_0001636
232 Ga0495643_0029804
233 Ga0495648_0015473
234 Ga0495666_0000317
235 Ga0495665_0068206
236 Ga0495633_0147646
237 Ga0495667_0091447
238 Ga0495668_0009497
239 Ga0495625_0002581
240 Ga0495588_0169033
241 Ga0495649_0123004
242 Ga0495660_0003011
243 Ga0495660_0117396
244 Ga0495604_0267818
245 Ga0495636_0002111
246 Ga0495683_0016193
247 Ga0495687_029126
248 Ga0495685_004761
249 Ga0495685_026188
250 Ga0495685_031298
251 Ga0495686_0076134
252 Ga0495602_0080920
253 Ga0496108_0000064
254 Ga0496122_0057099
255 Ga0496124_0003701
256 Ga0496124_0027445
257 Ga0496125_0010478
258 Ga0496126_0382373
259 Ga0501032_0054742
260 Ga0501032_0073052
261 Ga0501034_0036677
262 Ga0501034_0058160
263 Ga0501034_0220025
264 Ga0501036_0035986
265 Ga0501038_0019315
266 Ga0501038_0033222
267 Ga0501039_0082219
268 Ga0501039_0119180
269 Ga0501043_0022461
270 Ga0501046_0025063
271 Ga0501047_0045609
272 Ga0501070_0014352
273 Ga0501035_0004383
274 Ga0501035_0021952
275 Ga0501035_0100482
276 Ga0501044_0010124
277 Ga0501044_0048006
278 Ga0501044_0161272
279 Ga0501045_0262906
280 nmdc:mga05p37_476679_c1
281 Ga0500588_0000196
282 Ga0500616_0011212
283 Ga0466962_0001575
284 Ga0466962_0232700
285 2816509211
286 2585307087
287 2643947500
288 2644435192
289 2765583705
290 2785371190
291 2809233799
292 2862287427
293 2889055656
294 2889055911
295 2947227241
296 2954384298
297 2954724556
298 2954737262
299 2954743478
300 2954762434
301 3006498693
302 8023628913

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00106

adh_short

short chain dehydrogenase

12

200

0.96

PF13561

adh_short_C2

Enoyl-(Acyl carrier protein) reductase

18

221

0.9

PF08659

KR

KR domain

13

192

0.86

PF13460

NAD_binding_10

NAD(P)H-binding

18

218

0.76

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

14

190

0.71

Structural Annotation

Top 5 Hits

ID Description Score Start End
3n74-assembly1.cif.gz_C crystal structure of 3-ketoacyl-(acyl-carrier-protein) reductase from brucella melitensis 0.961 13 188
3m1a-assembly6.cif.gz_J the crystal structure of a short-chain dehydrogenase from streptomyces avermitilis to 2a 0.9609 12 283
3m1a-assembly4.cif.gz_E the crystal structure of a short-chain dehydrogenase from streptomyces avermitilis to 2a 0.9586 12 284
3m1a-assembly6.cif.gz_J the crystal structure of a short-chain dehydrogenase from streptomyces avermitilis to 2a 0.9574 12 283
6zzp-assembly2.cif.gz_D-3 crystal structure of (r)-3-hydroxybutyrate dehydrogenase from psychrobacter arcticus complexed with nad+ and 3-oxovalerate 0.9538 13 197
ID Description Score Start End Superfamily
af_F4J128_251_373_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9767 99 189 3.40.50.720
af_Q54WM6_4_292_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9541 11 286 3.40.50.720
5g4kB00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9526 12 192 3.40.50.720
3m1aB00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9525 12 284 3.40.50.720
af_Q75JD9_6_304_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9496 13 287 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A7W8W6H2-F1-model_v4 NADP-dependent 3-hydroxy acid dehydrogenase YdfG 0.9814 13 180 GO:0016491
AF-A0A3D9NWM5-F1-model_v4 deleted 0.9738 12 285
AF-A0A7C4SFP5-F1-model_v4 SDR family oxidoreductase 0.9718 13 194 GO:0016616
GO:0030497
AF-B9TP61-F1-model_v4 3-oxoacyl-[acyl-carrier-protein] reductase, putative 0.9717 12 127 GO:0016491
AF-A0A1A8VD90-F1-model_v4 Retinol dehydrogenase 8b 0.9712 86 183 GO:0004745
GO:0005829
GO:0016020
GO:0042572

Map