F212729

General Info

Members Datasets Scaffolds Average Seq Length
151 104 152 578

Family's Representative Sequence

Representative Sequence 3300049573|Ga0501037_0000001|Ga0501037_0000001_742931_744802
Length 623
Sequence MALFKHTGEVAAITLVLGADLLSHGQGNDRGKWCYNQSMQDAKEEVRARLNIEDVVGEYVQLKRAGRNFKGLSPFSGEKTPSFFVSPDKHIWHDFSSNKGGDIFSFVMQVEGMDFRQALEHLARKAGVDLSLYESKGSQDLARRKKRLLEAHRLATQYYQHSLLKNQHAIDYVFKQRGLSKQIVQDFKIGYAPTSGTALTQFLTKKGYSRQELSDAGLTNRFGGDLFRGRMMVPLMDASGQVIGFTARILGGDDPNAPKYLNTPQTLLYDKSRHVFGLSQAKEAIRKSDYAVIVEGNLDVVSSHQAGVAQVVATAGTAMTEQHLRALKRLSGHVRLAFDADKAGIAATERAIPIASQVGVELTIISLPDGAKDPDELIQQDVGLWQKAIDSSQPAVDWILEQYSQREDLTSASGKRLFTTAALNVVRSLQDPVEQDHYENKIAAMIGSSLEAVKAKLATVAAPEAAPMRRPVANNQEAPETDTTAYQDNLLAVALIDGPSQELFGTIDRTAFATEERRAVAEYIATHPNRSVQSTPKELQKYDTYVKILLLKAETRYADWNDQDRYFESARLLRQVINEHKKQTQAALTNQLRDAELSGDDAKAAELRAQLNTLIKEITRGQR

Samples

Sample ID Description Type Environment
1 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
2 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
3 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
4 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
5 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
6 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
7 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
8 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
9 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
10 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
11 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
12 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
13 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
14 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
15 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
16 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
17 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
18 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
19 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
20 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
21 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
22 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
23 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
24 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
25 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
26 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
27 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
28 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
29 3300009979 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_126 metaG Metagenome Rhizosphere
30 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
31 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
32 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
33 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
34 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
35 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
36 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
37 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
38 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
39 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
55 3300030733 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 2 Metagenome Rhizosphere
56 3300030734 Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 5 Metagenome Rhizosphere
57 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
58 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
59 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
60 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
61 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
62 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
63 3300034820 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2 Metagenome Rhizosphere
64 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
65 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
66 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
67 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
68 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
69 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
70 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
71 3300042145 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0430D_E14_080116_2581 Metagenome Rhizosphere
72 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
73 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
74 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
75 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
76 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
77 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
78 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
79 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
80 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
81 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
82 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
83 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
84 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
85 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
87 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
88 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
89 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
90 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
91 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
92 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
93 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
94 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
95 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
96 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
97 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
98 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
99 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
100 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
101 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
102 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
103 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
104 3300053724 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 22.52
Nodule 0
Rhizoplane 0.66
Rhizosphere 72.19
Stem 0
Stem Tuber 0
Unclassified 4.64

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10001636 3300001979 Bacteria 10322
2 JGI24739J22299_10000563 3300001989 Bacteria 13355
3 JGI24737J22298_10003371 3300001990 Bacteria 5649
4 JGI24735J21928_10000022 3300002067 Bacteria 97715
5 rootH1_10003685 3300003316 Bacteria 49635
6 rootH1_10003685 3300003323 Bacteria 21096
7 rootH2_10008921 3300003320 Bacteria 50114
8 rootH1_10001727 3300003323 Bacteria 102468
9 Ga0065715_10090517 3300005293 Bacteria 6877
10 Ga0070658_10000009 3300005327 Bacteria 319868
11 Ga0070683_100007019 3300005329 Bacteria 9481
12 Ga0070662_100010079 3300005457 Bacteria 6190
13 Ga0070684_100003939 3300005535 Bacteria 11246
14 Ga0068855_100000002 3300005563 Bacteria 616881
15 Ga0068855_100000017 3300005563 Bacteria 212278
16 Ga0068857_100001824 3300005577 Bacteria 17127
17 Ga0068857_100014512 3300005577 Bacteria 6872
18 Ga0068857_100096896 3300005577 Bacteria 2644
19 Ga0068856_100000248 3300005614 Bacteria 58638
20 Ga0068856_100001392 3300005614 Bacteria 25402
21 Ga0068852_100000001 3300005616 Bacteria 716526
22 Ga0068852_100000731 3300005616 Bacteria 21542
23 Ga0081455_10000006 3300005937 Bacteria 323066
24 Ga0075365_10000005 3300006038 Bacteria 125137
25 Ga0075365_10000113 3300006038 Bacteria 23945
26 Ga0075365_10001495 3300006038 Bacteria 10666
27 Ga0075368_10000664 3300006042 Bacteria 10443
28 Ga0075364_10000166 3300006051 Bacteria 29442
29 Ga0075364_10000529 3300006051 Bacteria 19455
30 Ga0075364_10021291 3300006051 Bacteria 4085
31 Ga0075367_10000120 3300006178 Bacteria 22682
32 Ga0075369_10011874 3300006186 Bacteria 3432
33 Ga0097621_100062087 3300006237 Bacteria 3067
34 Ga0068865_100003104 3300006881 Bacteria 9936
35 Ga0105240_10000030 3300009093 Bacteria 321312
36 Ga0105240_10000468 3300009093 Bacteria 74517
37 Ga0105240_10000802 3300009093 Bacteria 56926
38 Ga0105240_10008638 3300009093 Bacteria 14554
39 Ga0105241_10001114 3300009174 Bacteria 20464
40 Ga0105237_10000001 3300009545 Bacteria 1009213
41 Ga0105237_10000159 3300009545 Bacteria 95980
42 Ga0105238_10005875 3300009551 Bacteria 12155
43 Ga0105032_100002 3300009979 Bacteria 303884
44 Ga0105239_10001218 3300010375 Bacteria 35078
45 Ga0105239_10248292 3300010375 Unclassified 1999
46 Ga0105246_10004907 3300011119 Bacteria 8152
47 Ga0157373_10011377 3300013100 Bacteria 6543
48 Ga0157373_10044083 3300013100 Bacteria 3185
49 Ga0157370_10000232 3300013104 Bacteria 71177
50 Ga0157370_10000486 3300013104 Bacteria 49453
51 Ga0157370_10007396 3300013104 Bacteria 11960
52 Ga0157369_10000003 3300013105 Bacteria 507337
53 Ga0157369_10000168 3300013105 Bacteria 92689
54 Ga0157369_10000528 3300013105 Bacteria 50494
55 Ga0157369_10000581 3300013105 Bacteria 47734
56 Ga0157369_10032303 3300013105 Bacteria 5758
57 Ga0157374_10025267 3300013296 Bacteria 5330
58 Ga0157372_10000007 3300013307 Bacteria 340690
59 Ga0157372_10000096 3300013307 Bacteria 91282
60 Ga0157372_10059823 3300013307 Bacteria 4262
61 Ga0157377_10000242 3300014745 Bacteria 27661
62 Ga0157376_10000054 3300014969 Bacteria 99154
63 Ga0207688_10045638 3300025901 Bacteria 2445
64 Ga0207647_10000243 3300025904 Bacteria 44569
65 Ga0207705_10000010 3300025909 Bacteria 518023
66 Ga0207654_10001561 3300025911 Bacteria 12032
67 Ga0207695_10000009 3300025913 Bacteria 1034276
68 Ga0207695_10004122 3300025913 Bacteria 19960
69 Ga0207695_10006421 3300025913 Bacteria 15267
70 Ga0207695_10006948 3300025913 Bacteria 14535
71 Ga0207671_10000003 3300025914 Bacteria 1065461
72 Ga0207671_10000008 3300025914 Bacteria 798229
73 Ga0207649_10045546 3300025920 Bacteria 2690
74 Ga0207694_10003662 3300025924 Bacteria 12166
75 Ga0207706_10000004 3300025933 Bacteria 280765
76 Ga0207704_10000274 3300025938 Bacteria 24742
77 Ga0207679_10000069 3300025945 Bacteria 93919
78 Ga0207667_10000005 3300025949 Bacteria 715503
79 Ga0207667_10000048 3300025949 Bacteria 238293
80 Ga0207702_10000079 3300026078 Bacteria 110210
81 Ga0207702_10000181 3300026078 Bacteria 75992
82 Ga0207674_10000486 3300026116 Bacteria 52406
83 Ga0207674_10016694 3300026116 Bacteria 8024
84 Ga0207674_10121784 3300026116 Bacteria 2576
85 Ga0207698_10000001 3300026142 Bacteria 625389
86 Ga0207698_10000567 3300026142 Bacteria 21566
87 Ga0209813_10000186 3300027866 Bacteria 19692
88 Ga0314311_1150615 3300030733 Bacteria 8817
89 Ga0316179_1056598 3300030734 Bacteria 39107
90 Ga0316183_1008390 3300030742 Bacteria 9967
91 Ga0316183_1114883 3300030742 Bacteria 48072
92 Ga0316181_1123581 3300030744 Bacteria 76132
93 Ga0316182_1010237 3300030745 Bacteria 8976
94 Ga0316182_1234581 3300030745 Bacteria 23872
95 Ga0316182_1448605 3300030745 Bacteria 6335
96 Ga0307516_10000003 3300031730 Bacteria 459377
97 Ga0307516_10001926 3300031730 Bacteria 28435
98 Ga0307406_10000001 3300031901 Bacteria 638191
99 Ga0307406_10000197 3300031901 Bacteria 36133
100 Ga0307412_10002279 3300031911 Bacteria 10620
101 Ga0373959_0000002 3300034820 Bacteria 119011
102 Ga0395899_0019316 3300037312 Bacteria 5178
103 Ga0395900_0000001 3300037418 Bacteria 931146
104 Ga0395898_0000002 3300037466 Bacteria 931013
105 Ga0395901_0000006 3300038443 Bacteria 514112
106 Ga0395901_0007168 3300038443 Bacteria 11250
107 Ga0439438_013937 3300041405 Bacteria 2406
108 Ga0439447_005753 3300041407 Bacteria 4095
109 Ga0439432_018840 3300042006 Bacteria 2303
110 Ga0450906_002874 3300042145 Bacteria 3745
111 Ga0439446_0000002 3300042156 Bacteria 177065
112 Ga0439446_0001282 3300042156 Bacteria 5640
113 Ga0439434_0006139 3300042435 Bacteria 3503
114 Ga0439464_0000001 3300042439 Bacteria 126033
115 Ga0450918_000494 3300042531 Bacteria 8451
116 Ga0466965_0000207 3300044683 Bacteria 18400
117 Ga0466963_0054092 3300044694 Bacteria 2667
118 Ga0451576_0007365 3300045051 Bacteria 13188
119 Ga0495638_0000119 3300046460 Bacteria 127603
120 Ga0495660_0000114 3300046810 Bacteria 86218
121 Ga0495686_0015121 3300047472 Bacteria 5286
122 Ga0496115_0000001 3300048918 Bacteria 367230
123 Ga0496124_0011785 3300048927 Bacteria 8714
124 Ga0496124_0151032 3300048927 Bacteria 1822
125 Ga0501034_0000649 3300049571 Bacteria 53535
126 Ga0501034_0002612 3300049571 Bacteria 21390
127 Ga0501037_0000001 3300049573 Bacteria 753276
128 Ga0501038_0032923 3300049574 Bacteria 4568
129 nmdc:mga00v17_128_c1 3300050491 Bacteria 44347
130 nmdc:mga00v17_1816_c1 3300050491 Bacteria 11040
131 nmdc:mga00v17_79_c1 3300050491 Bacteria 59101
132 nmdc:mga0yw44_11_c1 3300050492 Bacteria 130624
133 nmdc:mga0yw44_1238_c1 3300050492 Bacteria 10033
134 nmdc:mga0yw44_468_c1 3300050492 Bacteria 14325
135 nmdc:mga0yw44_5_c1 3300050492 Bacteria 313167
136 nmdc:mga04h51_213_c1 3300050495 Bacteria 15573
137 nmdc:mga07m45_14804_c1 3300050496 Bacteria 4165
138 Ga0500643_005181 3300053087 Bacteria 5680
139 Ga0500646_0000010 3300053090 Bacteria 91525
140 Ga0500583_0001049 3300053092 Bacteria 7909
141 Ga0500651_0000021 3300053093 Bacteria 137927
142 Ga0500641_0000001 3300053096 Bacteria 1115973
143 Ga0500555_000045 3300053103 Bacteria 63148
144 Ga0500562_000001 3300053108 Bacteria 1178987
145 Ga0500569_000002 3300053109 Bacteria 127605
146 Ga0500594_0000106 3300053118 Bacteria 24380
147 Ga0500652_000001 3300053131 Bacteria 946868
148 Ga0500655_000068 3300053133 Bacteria 28266
149 Ga0500588_0000032 3300053146 Bacteria 28393
150 Ga0500616_0000012 3300053153 Bacteria 681798
151 Ga0500616_0043492 3300053153 Bacteria 2400
152 Ga0500570_000807 3300053724 Bacteria 13185

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048927 Ga0496124_0151032 Ga0496124_0151032_11_1492 490
2 3300041405 Ga0439438_013937 Ga0439438_013937_26_1576 506
3 3300044694 Ga0466963_0054092 Ga0466963_0054092_983_2614 533
4 3300047472 Ga0495686_0015121 Ga0495686_0015121_292_2043 551
5 3300031730 Ga0307516_10000003 Ga0307516_10000003139 555
6 3300031911 Ga0307412_10002279 Ga0307412_100022799 555
7 3300005563 Ga0068855_100000017 Ga0068855_100000017178 556
8 3300009093 Ga0105240_10000468 Ga0105240_1000046871 556
9 3300025913 Ga0207695_10004122 Ga0207695_1000412218 556
10 3300025949 Ga0207667_10000048 Ga0207667_10000048176 556
11 3300053153 Ga0500616_0043492 Ga0500616_0043492_683_2356 556
12 3300053153 Ga0500616_0000012 Ga0500616_0000012_12555_14309 557
13 3300003323 rootH1_10001727 rootH1_1000172774 558
14 3300053092 Ga0500583_0001049 Ga0500583_0001049_3338_5077 561
15 3300053096 Ga0500641_0000001 Ga0500641_0000001_743685_745424 561
16 3300053131 Ga0500652_000001 Ga0500652_000001_736004_737743 561
17 3300006051 Ga0075364_10021291 Ga0075364_100212912 562
18 3300050491 nmdc:mga00v17_1816_c1 nmdc:mga00v17_1816_c1_7232_8989 562
19 3300005535 Ga0070684_100003939 Ga0070684_10000393910 564
20 3300034820 Ga0373959_0000002 Ga0373959_0000002_94830_96545 564
21 3300003320 rootH2_10008921 rootH2_100089212 565
22 3300046810 Ga0495660_0000114 Ga0495660_0000114_3604_5343 565
23 3300025913 Ga0207695_10006421 Ga0207695_1000642116 566
24 3300009093 Ga0105240_10000802 Ga0105240_1000080264 567
25 3300042531 Ga0450918_000494 Ga0450918_000494_1768_3513 569
26 3300005614 Ga0068856_100000248 Ga0068856_10000024832 570
27 3300010375 Ga0105239_10001218 Ga0105239_1000121819 570
28 3300026078 Ga0207702_10000181 Ga0207702_1000018132 570
29 3300037418 Ga0395900_0000001 Ga0395900_0000001_626635_628389 570
30 3300037466 Ga0395898_0000002 Ga0395898_0000002_477617_479371 570
31 3300038443 Ga0395901_0000006 Ga0395901_0000006_123293_125047 570
32 3300053093 Ga0500651_0000021 Ga0500651_0000021_5870_7588 570
33 3300053118 Ga0500594_0000106 Ga0500594_0000106_16809_18527 570
34 3300009093 Ga0105240_10000030 Ga0105240_10000030287 571
35 3300009545 Ga0105237_10000001 Ga0105237_1000000188 571
36 3300013307 Ga0157372_10000007 Ga0157372_1000000788 571
37 3300013105 Ga0157369_10000003 Ga0157369_1000000375 575
38 3300041407 Ga0439447_005753 Ga0439447_005753_343_2100 575
39 3300042006 Ga0439432_018840 Ga0439432_018840_23_1780 575
40 3300042156 Ga0439446_0001282 Ga0439446_0001282_871_2628 575
41 3300044683 Ga0466965_0000207 Ga0466965_0000207_13261_15000 575
42 3300053108 Ga0500562_000001 Ga0500562_000001_809145_810896 575
43 3300006038 Ga0075365_10000113 Ga0075365_1000011324 576
44 3300030745 Ga0316182_1448605 Ga0316182_14486057 576
45 3300042145 Ga0450906_002874 Ga0450906_002874_1365_3101 576
46 3300049571 Ga0501034_0000649 Ga0501034_0000649_8012_9745 576
47 3300050492 nmdc:mga0yw44_1238_c1 nmdc:mga0yw44_1238_c1_4890_6626 576
48 3300005293 Ga0065715_10090517 Ga0065715_100905172 577
49 3300006038 Ga0075365_10001495 Ga0075365_100014956 577
50 3300006042 Ga0075368_10000664 Ga0075368_1000066413 577
51 3300006051 Ga0075364_10000166 Ga0075364_1000016626 577
52 3300006051 Ga0075364_10000529 Ga0075364_100005294 577
53 3300006178 Ga0075367_10000120 Ga0075367_100001203 577
54 3300006186 Ga0075369_10011874 Ga0075369_100118742 577
55 3300027866 Ga0209813_10000186 Ga0209813_1000018614 577
56 3300030745 Ga0316182_1010237 Ga0316182_10102379 577
57 3300050491 nmdc:mga00v17_128_c1 nmdc:mga00v17_128_c1_17430_19166 577
58 3300050491 nmdc:mga00v17_79_c1 nmdc:mga00v17_79_c1_22545_24305 577
59 3300050492 nmdc:mga0yw44_11_c1 nmdc:mga0yw44_11_c1_74024_75760 577
60 3300050492 nmdc:mga0yw44_468_c1 nmdc:mga0yw44_468_c1_8786_10546 577
61 3300050495 nmdc:mga04h51_213_c1 nmdc:mga04h51_213_c1_4817_6553 577
62 3300050496 nmdc:mga07m45_14804_c1 nmdc:mga07m45_14804_c1_2114_3850 577
63 3300053090 Ga0500646_0000010 Ga0500646_0000010_9521_11260 577
64 3300013104 Ga0157370_10000232 Ga0157370_1000023223 578
65 3300025913 Ga0207695_10000009 Ga0207695_1000000989 578
66 3300025914 Ga0207671_10000003 Ga0207671_1000000389 578
67 3300030742 Ga0316183_1008390 Ga0316183_10083906 579
68 3300030744 Ga0316181_1123581 Ga0316181_112358184 579
69 3300006038 Ga0075365_10000005 Ga0075365_10000005101 580
70 3300031901 Ga0307406_10000001 Ga0307406_10000001606 580
71 3300031901 Ga0307406_10000197 Ga0307406_100001974 580
72 3300048918 Ga0496115_0000001 Ga0496115_0000001_321612_323357 580
73 3300048927 Ga0496124_0011785 Ga0496124_0011785_162_1913 580
74 3300050492 nmdc:mga0yw44_5_c1 nmdc:mga0yw44_5_c1_187076_188818 580
75 3300053087 Ga0500643_005181 Ga0500643_005181_2824_4569 580
76 3300053133 Ga0500655_000068 Ga0500655_000068_9642_11390 580
77 3300053724 Ga0500570_000807 Ga0500570_000807_4256_6001 580
78 3300003316 rootH1_10003685 rootH1_1000368518 581
79 3300005563 Ga0068855_100000002 Ga0068855_100000002600 581
80 3300005577 Ga0068857_100096896 Ga0068857_1000968962 581
81 3300009979 Ga0105032_100002 Ga0105032_100002324 581
82 3300025949 Ga0207667_10000005 Ga0207667_10000005710 581
83 3300026116 Ga0207674_10121784 Ga0207674_101217842 581
84 3300037312 Ga0395899_0019316 Ga0395899_0019316_803_2551 581
85 3300038443 Ga0395901_0007168 Ga0395901_0007168_9198_10970 581
86 3300042156 Ga0439446_0000002 Ga0439446_0000002_82486_84234 581
87 3300042435 Ga0439434_0006139 Ga0439434_0006139_1080_2828 581
88 3300045051 Ga0451576_0007365 Ga0451576_0007365_5327_7075 581
89 3300046460 Ga0495638_0000119 Ga0495638_0000119_122096_123847 581
90 3300053103 Ga0500555_000045 Ga0500555_000045_18344_20089 581
91 3300053109 Ga0500569_000002 Ga0500569_000002_3757_5508 581
92 3300053146 Ga0500588_0000032 Ga0500588_0000032_3739_5490 581
93 3300005577 Ga0068857_100014512 Ga0068857_1000145124 582
94 3300005616 Ga0068852_100000001 Ga0068852_10000000191 582
95 3300005937 Ga0081455_10000006 Ga0081455_10000006273 582
96 3300009174 Ga0105241_10001114 Ga0105241_1000111416 582
97 3300009545 Ga0105237_10000159 Ga0105237_1000015916 582
98 3300009551 Ga0105238_10005875 Ga0105238_100058752 582
99 3300013105 Ga0157369_10000168 Ga0157369_1000016875 582
100 3300013105 Ga0157369_10032303 Ga0157369_100323032 582
101 3300013307 Ga0157372_10000096 Ga0157372_1000009688 582
102 3300013307 Ga0157372_10059823 Ga0157372_100598233 582
103 3300025911 Ga0207654_10001561 Ga0207654_100015616 582
104 3300025914 Ga0207671_10000008 Ga0207671_1000000890 582
105 3300025924 Ga0207694_10003662 Ga0207694_100036622 582
106 3300026116 Ga0207674_10016694 Ga0207674_100166945 582
107 3300026142 Ga0207698_10000001 Ga0207698_1000000143 582
108 3300031730 Ga0307516_10001926 Ga0307516_1000192614 582
109 3300049571 Ga0501034_0002612 Ga0501034_0002612_13077_14834 582
110 3300049573 Ga0501037_0000001 Ga0501037_0000001_742931_744802 582
111 3300049574 Ga0501038_0032923 Ga0501038_0032923_552_2309 582
112 3300009093 Ga0105240_10008638 Ga0105240_1000863811 583
113 3300010375 Ga0105239_10248292 Ga0105239_102482922 583
114 3300025913 Ga0207695_10006948 Ga0207695_1000694811 583
115 3300030733 Ga0314311_1150615 Ga0314311_11506153 583
116 3300030734 Ga0316179_1056598 Ga0316179_105659812 583
117 3300030742 Ga0316183_1114883 Ga0316183_111488340 583
118 3300030745 Ga0316182_1234581 Ga0316182_123458123 583
119 3300001979 JGI24740J21852_10001636 JGI24740J21852_100016363 584
120 3300001989 JGI24739J22299_10000563 JGI24739J22299_1000056315 584
121 3300001990 JGI24737J22298_10003371 JGI24737J22298_100033713 584
122 3300002067 JGI24735J21928_10000022 JGI24735J21928_1000002216 584
123 3300005327 Ga0070658_10000009 Ga0070658_10000009259 584
124 3300005329 Ga0070683_100007019 Ga0070683_10000701910 584
125 3300005457 Ga0070662_100010079 Ga0070662_1000100794 584
126 3300005577 Ga0068857_100001824 Ga0068857_10000182417 584
127 3300005614 Ga0068856_100001392 Ga0068856_10000139215 584
128 3300005616 Ga0068852_100000731 Ga0068852_10000073111 584
129 3300006237 Ga0097621_100062087 Ga0097621_1000620872 584
130 3300006881 Ga0068865_100003104 Ga0068865_1000031045 584
131 3300011119 Ga0105246_10004907 Ga0105246_100049074 584
132 3300013100 Ga0157373_10011377 Ga0157373_100113779 584
133 3300013100 Ga0157373_10044083 Ga0157373_100440833 584
134 3300013104 Ga0157370_10000486 Ga0157370_1000048617 584
135 3300013104 Ga0157370_10007396 Ga0157370_1000739611 584
136 3300013105 Ga0157369_10000528 Ga0157369_1000052842 584
137 3300013105 Ga0157369_10000581 Ga0157369_1000058141 584
138 3300013296 Ga0157374_10025267 Ga0157374_100252675 584
139 3300014745 Ga0157377_10000242 Ga0157377_1000024229 584
140 3300014969 Ga0157376_10000054 Ga0157376_1000005417 584
141 3300025901 Ga0207688_10045638 Ga0207688_100456382 584
142 3300025904 Ga0207647_10000243 Ga0207647_1000024319 584
143 3300025909 Ga0207705_10000010 Ga0207705_10000010266 584
144 3300025920 Ga0207649_10045546 Ga0207649_100455462 584
145 3300025933 Ga0207706_10000004 Ga0207706_10000004276 584
146 3300025938 Ga0207704_10000274 Ga0207704_1000027414 584
147 3300025945 Ga0207679_10000069 Ga0207679_1000006984 584
148 3300026078 Ga0207702_10000079 Ga0207702_1000007985 584
149 3300026116 Ga0207674_10000486 Ga0207674_1000048656 584
150 3300026142 Ga0207698_10000567 Ga0207698_1000056713 584
151 3300042439 Ga0439464_0000001 Ga0439464_0000001_72843_74597 584

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13155

Toprim_2

Toprim-like

292

378

0.97

PF01807

zf-CHC2

CHC2 zinc finger

38

135

0.95

PF10410

DnaB_bind

DnaB-helicase binding domain of primase

396

451

0.95

PF08275

DNAG_N

DNA primase catalytic core, N-terminal domain

158

282

0.94

PF01751

Toprim

Toprim domain

290

366

0.92

PF13662

Toprim_4

Toprim domain

289

366

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
7qnl-assembly1.cif.gz_AAA lov2-darpin fusion - d4_deltalov 0.9976 535 583
1yzm-assembly1.cif.gz_A structure of rabenosyn (458-503), rab4 binding domain 0.9949 542 584
1d0q-assembly1.cif.gz_B structure of the zinc-binding domain of bacillus stearothermophilus dna primase 0.9355 1 96
1yzm-assembly1.cif.gz_A structure of rabenosyn (458-503), rab4 binding domain 0.9112 542 584
1d0q-assembly1.cif.gz_B structure of the zinc-binding domain of bacillus stearothermophilus dna primase 0.8749 1 96
ID Description Score Start End Superfamily
1yzmA00 Few Secondary Structures;Irregular;DNA Excision Repair, Uvrb; Chain A;Rabenosyn, Rab binding domain 0.9949 542 584 4.10.860.20
af_P9WNW1_1_101_3.90.580.10 Alpha Beta;Alpha-Beta Complex;DNA Primase; Chain A;Zinc finger, CHC2-type?domain 0.9737 1 91 3.90.580.10
1yzmA00 Few Secondary Structures;Irregular;DNA Excision Repair, Uvrb; Chain A;Rabenosyn, Rab binding domain 0.9112 542 584 4.10.860.20
1dd9A03 Mainly Alpha;Up-down Bundle;Pheromone ER-1;DnaG, RNA polymerase domain, helical bundle 0.9043 357 409 1.20.50.20
5w33A01 Alpha Beta;Alpha-Beta Complex;DNA primase DNAg catalytic core, N-terminal domain;DNA primase, catalytic core, N-terminal domain 0.9018 107 231 3.90.980.10
ID Description Score Start End GO Terms
AF-A0A7S3YBI0-F1-model_v4 Zinc finger CHC2-type domain-containing protein 0.9817 4 87 GO:0003677
GO:0003896
GO:0005737
GO:0008270
AF-A0A535A4H9-F1-model_v4 DNA primase 0.9816 2 92 GO:0003677
GO:0003896
GO:0005737
GO:0008270
AF-A0A3D5UVF1-F1-model_v4 DNA primase 0.9805 6 83 GO:0003677
GO:0003896
GO:0005737
GO:0008270
AF-A0A0F9H806-F1-model_v4 Zinc finger CHC2-type domain-containing protein 0.9792 6 91 GO:0003677
GO:0003896
GO:0005737
GO:0008270
AF-A0A7Z9IB58-F1-model_v4 DNA primase 0.978 3 85 GO:0003677
GO:0003896
GO:0005737
GO:0008270

Feature Viewer

pLDDT pTM Quality
85.74 0.56 Medium
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Predicted Structure (AlphaFold2)

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