F210448
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 151 | 115 | 302 | 1017 |
Family's Representative Sequence
| Representative Sequence | 3300005288|Ga0065714_10002183|Ga0065714_1000218330 |
| Length | 1190 |
| Sequence | MHFPIHGEGSFETVIDDYVLGAEYSAIDRKGFDSERAIFPEVVLTFIRETQPKEWTKLESLHGERTGEQVLGDLCKWMDVNGSLATLRHGFKCYGRTLRVAFFKAAHELNPELEAQYAANRLGITRQLHFSSRAPDKSLDVTISLNGIPIATVELKNPLTNQTVDNAIWQYQHTRDPREPIFEFKRRTLVHFAVDTELVFMTTRLAGNATHFLPFNKGCDGGAGNPPDPAGRTYRTAYLWEEVLQRDSLLDLLARFIHLQIEEVRDDEGRKVKKETMIFPRYHQLQAVRWLVGAARKEGVGNNYLIEHSAGSGKSNTIGWLAHRLASLHDSENQRVFDSVVVVTDRVVLDQQLQDTIYQFEHKMGVVQKIDESSRQLASALESGVPIIITTLQKFPFVSRQLLKMAEERGEKGSGTLQTRRCAVIIDEAHSSQGGEAATELKGVLGGAELLKKAKEQAAEEGLPDMEELFRSMAKRARQANLSFFAFTATPKHKTLAVFGSDDEHKHKYTMRQAIEEGFILDVLKNYTTYKTYFKLLRTSKDDPNVERKKAAKALARFLKLHPHNIAQKTELMVEHFHAVTEHKIGGRAKAMVVTGSRLEAVRYKQKFDRYIKLKGYPIKSLVAFSGTVEDDKLEDVTYTEEGMNLGIREKELPEKFGSPEYQVLLVAEKYQTGFDQPLLHTMYVDKRLAGIQAVQTLSRLNRTHPLKEDTFILDFVNERQEIQDAFKVYYEGAEMGEEADPDSMYRLKGELDASGIYLPEEVERFCAVYFKPKQRQSAADHQGMNAILDPGVQRFSVWQKANEDEAELWRGKLLVFRNLYGFLSQIIPYQDSDLEKSYVFLRHLSSKLPKRRTGPAYEFDDDVRLEYYRLQKISEGSISLNAGTARALDGPTEVGTGLLREEMLVLSRLIDIVNERFGTDFNNADQLFFDQIVEIAITDERLKEAAAVNPGDKFELVFKNLLETLFVERIDQNEEIFVRFMNDQAFQKVVTEWMASEAYRKLRGTSRVQESESSRNGQEKVLPANIRVVQPHPKDRYVTCVPLVPLKVAAGAFSDPQYVEDRNWDWVKIRTKRKLHRGMFVAQVFGESMEPTIPDGSYCLFSAPVTGTRQGKIVLVQLREGVDSETGESYTLKQYESNKVADGDSWRHKNITLKPINPAFPPIELTTMDDGQLKVVAEFIEVLSASVNQ |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300005288 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) | Metagenome | Rhizosphere |
| 2 | 2162886011 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v2 (version 2) | Metagenome | Rhizosphere |
| 3 | 3300003320 | Sugarcane root Sample H2 | Metagenome | Unclassified |
| 4 | 3300003322 | Sugarcane root Sample L2 | Metagenome | Unclassified |
| 5 | 3300003323 | Sugarcane root Sample H1 | Metagenome | Unclassified |
| 6 | 3300003354 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS | Metagenome | Endosphere |
| 7 | 3300003790 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 | Metagenome | Endosphere |
| 8 | 3300003791 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 | Metagenome | Endosphere |
| 9 | 3300005290 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) | Metagenome | Rhizosphere |
| 10 | 3300005293 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) | Metagenome | Rhizosphere |
| 11 | 3300005331 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG | Metagenome | Rhizosphere |
| 12 | 3300005336 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG | Metagenome | Rhizosphere |
| 13 | 3300005366 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG | Metagenome | Rhizosphere |
| 14 | 3300005438 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG | Metagenome | Rhizosphere |
| 15 | 3300005617 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 | Metagenome | Rhizosphere |
| 16 | 3300005937 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 | Metagenome | Rhizosphere |
| 17 | 3300005985 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 | Metagenome | Rhizosphere |
| 18 | 3300006195 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 | Metagenome | Endosphere |
| 19 | 3300006871 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 | Metagenome | Rhizosphere |
| 20 | 3300006931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 21 | 3300006946 | Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG | Metagenome | Nodule |
| 22 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 23 | 3300009147 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 24 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 25 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 26 | 3300013100 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG | Metagenome | Rhizosphere |
| 27 | 3300013102 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG | Metagenome | Rhizosphere |
| 28 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 29 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 30 | 3300015261 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG | Metagenome | Rhizosphere |
| 31 | 3300015262 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG | Metagenome | Rhizosphere |
| 32 | 3300017792 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG | Metagenome | Rhizosphere |
| 33 | 3300025226 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 34 | 3300025256 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) | Metagenome | Unclassified |
| 35 | 3300025273 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 36 | 3300025295 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 37 | 3300025297 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) | Metagenome | Endosphere |
| 38 | 3300025298 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 39 | 3300025302 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) | Metagenome | Endosphere |
| 40 | 3300025910 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 41 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 42 | 3300025917 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 43 | 3300025921 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 44 | 3300025924 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 45 | 3300025925 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 46 | 3300025932 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 47 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 48 | 3300027111 | Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) | Metagenome | Nodule |
| 49 | 3300028577 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG | Metagenome | Rhizosphere |
| 50 | 3300028800 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG | Metagenome | Rhizosphere |
| 51 | 3300031235 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG | Metagenome | Rhizosphere |
| 52 | 3300031238 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG | Metagenome | Rhizosphere |
| 53 | 3300031241 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG | Metagenome | Rhizosphere |
| 54 | 3300031242 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG | Metagenome | Rhizosphere |
| 55 | 3300031249 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG | Metagenome | Rhizosphere |
| 56 | 3300031251 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG | Metagenome | Rhizosphere |
| 57 | 3300031344 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG | Metagenome | Rhizosphere |
| 58 | 3300031711 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG | Metagenome | Rhizosphere |
| 59 | 3300031712 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG | Metagenome | Rhizosphere |
| 60 | 3300037471 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 | Metagenome | Rhizosphere |
| 61 | 3300042013 | Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z071817_5339 | Metagenome | Rhizosphere |
| 62 | 3300042876 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED | Metagenome | Rhizosphere |
| 63 | 3300044673 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED | Metagenome | Rhizosphere |
| 64 | 3300044712 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED | Metagenome | Rhizosphere |
| 65 | 3300045049 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R | Metagenome | Rhizosphere |
| 66 | 3300045051 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED | Metagenome | Rhizosphere |
| 67 | 3300046471 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere | Metagenome | Rhizosphere |
| 68 | 3300046472 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere | Metagenome | Rhizosphere |
| 69 | 3300046491 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere | Metagenome | Rhizosphere |
| 70 | 3300046506 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere | Metagenome | Rhizosphere |
| 71 | 3300046515 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere | Metagenome | Rhizosphere |
| 72 | 3300046524 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere | Metagenome | Rhizosphere |
| 73 | 3300046616 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere | Metagenome | Rhizosphere |
| 74 | 3300046648 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere | Metagenome | Rhizosphere |
| 75 | 3300046660 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere | Metagenome | Rhizosphere |
| 76 | 3300048905 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 | Metagenome | Rhizoplane |
| 77 | 3300048906 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 | Metagenome | Rhizoplane |
| 78 | 3300048907 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 | Metagenome | Rhizoplane |
| 79 | 3300048913 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 | Metagenome | Rhizoplane |
| 80 | 3300048915 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 | Metagenome | Rhizoplane |
| 81 | 3300048918 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 | Metagenome | Rhizoplane |
| 82 | 3300048919 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled | Metagenome | Unclassified |
| 83 | 3300048920 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 | Metagenome | Unclassified |
| 84 | 3300048921 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 | Metagenome | Unclassified |
| 85 | 3300048922 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 | Metagenome | Unclassified |
| 86 | 3300048923 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 | Metagenome | Unclassified |
| 87 | 3300048924 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 | Metagenome | Unclassified |
| 88 | 3300048925 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled | Metagenome | Unclassified |
| 89 | 3300048927 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 | Metagenome | Unclassified |
| 90 | 3300048928 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 | Metagenome | Unclassified |
| 91 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 92 | 3300049569 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 93 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 94 | 3300049573 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 95 | 3300049579 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 96 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 97 | 3300049853 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_A_2_drought | Metagenome | Rhizosphere |
| 98 | 3300050493 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation | Metagenome | Endosphere |
| 99 | 3300050509 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation | Metagenome | Rhizosphere |
| 100 | 3300050512 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation | Metagenome | Rhizosphere |
| 101 | 3300053079 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere | Metagenome | Endosphere |
| 102 | 2510065019 | Rhizobium leguminosarum bv. trifolii WSM1689 | Isolate | Nodule |
| 103 | 2511231016 | Pseudomonas sp. GM50 | Isolate | Nodule |
| 104 | 2515154122 | Paraburkholderia atlantica JPY251 | Isolate | Nodule |
| 105 | 2547132181 | Kosakonia sacchari SP1 | Isolate | Stem |
| 106 | 2582581293 | Caulobacter henricii YR570 | Isolate | Rhizosphere |
| 107 | 2582581308 | Rhizobium sp. OK494 | Isolate | Rhizosphere |
| 108 | 2597489875 | Mesorhizobium ciceri ca181 | Isolate | Unclassified |
| 109 | 2738541333 | Rhizobium sophoriradicis CCBAU 03470 | Isolate | Unclassified |
| 110 | 2738541337 | Pelomonas sp. BT06 | Isolate | Unclassified |
| 111 | 2883577096 | Roseococcus sp. SYP-B2431 | Isolate | Rhizosphere |
| 112 | 2954721474 | Streptomyces sp. SAI-117 | Isolate | Rhizosphere |
| 113 | 2958458903 | Flavobacterium anhuiense RCM74 | Isolate | Rhizosphere |
| 114 | 2979100975 | Agrobacterium pusense SORGH_AS 755 | Isolate | Unclassified |
| 115 | 8057132660 | Paracoccus rhizosphaerae LMG 21293 | Isolate | Rhizosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 90.73 |
| Metatranscriptomes | 0 |
| Isolates | 9.27 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 8.61 |
| Nodule | 3.31 |
| Rhizoplane | 3.97 |
| Rhizosphere | 68.21 |
| Stem | 0.66 |
| Stem Tuber | 0 |
| Unclassified | 0.66 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0065714_10002183 | 3300005288 | Bacteria | 378167 |
| 2 | MRS1b_contig_5741860 | 2162886011 | Bacteria | 5678 |
| 3 | rootH2_10001057 | 3300003320 | Bacteria | 19076 |
| 4 | rootL2_10027007 | 3300003322 | Bacteria | 21937 |
| 5 | rootH1_10041701 | 3300003323 | Bacteria | 6228 |
| 6 | JGI25160J50197_1000347 | 3300003354 | Bacteria | 30782 |
| 7 | Ga0055528_1001622 | 3300003790 | Bacteria | 13269 |
| 8 | Ga0055530_10001667 | 3300003791 | Bacteria | 15798 |
| 9 | Ga0065712_10000116 | 3300005290 | Bacteria | 140894 |
| 10 | Ga0065712_10000197 | 3300005290 | Bacteria | 21056 |
| 11 | Ga0065715_10088944 | 3300005293 | Bacteria | 22223 |
| 12 | Ga0065715_10089569 | 3300005293 | Bacteria | 9434 |
| 13 | Ga0070670_100035097 | 3300005331 | Bacteria | 4316 |
| 14 | Ga0070680_100005077 | 3300005336 | Bacteria | 9931 |
| 15 | Ga0070659_100005836 | 3300005366 | Bacteria | 8870 |
| 16 | Ga0070701_10000482 | 3300005438 | Bacteria | 13672 |
| 17 | Ga0068859_100000009 | 3300005617 | Bacteria | 380451 |
| 18 | Ga0081455_10019512 | 3300005937 | Bacteria | 6413 |
| 19 | Ga0081539_10002226 | 3300005985 | Bacteria | 28283 |
| 20 | Ga0075366_10000649 | 3300006195 | Bacteria | 16373 |
| 21 | Ga0075434_100012152 | 3300006871 | Bacteria | 8155 |
| 22 | Ga0097620_100000009 | 3300006931 | Bacteria | 380451 |
| 23 | Ga0079104_1003106 | 3300006946 | Bacteria | 8081 |
| 24 | Ga0105240_10000024 | 3300009093 | Bacteria | 375919 |
| 25 | Ga0105240_10002843 | 3300009093 | Bacteria | 27367 |
| 26 | Ga0114129_10038492 | 3300009147 | Bacteria | 6745 |
| 27 | Ga0105238_10000569 | 3300009551 | Bacteria | 38733 |
| 28 | Ga0105239_10001290 | 3300010375 | Bacteria | 33815 |
| 29 | Ga0157373_10001770 | 3300013100 | Bacteria | 16437 |
| 30 | Ga0157371_10017104 | 3300013102 | Bacteria | 5395 |
| 31 | Ga0157370_10000219 | 3300013104 | Bacteria | 72924 |
| 32 | Ga0157370_10000226 | 3300013104 | Bacteria | 71813 |
| 33 | Ga0157370_10006515 | 3300013104 | Bacteria | 12854 |
| 34 | Ga0157369_10015121 | 3300013105 | Bacteria | 8711 |
| 35 | Ga0182006_1002356 | 3300015261 | Bacteria | 10373 |
| 36 | Ga0182007_10002716 | 3300015262 | Bacteria | 8658 |
| 37 | Ga0163161_10015290 | 3300017792 | Bacteria | 5348 |
| 38 | Ga0209674_100918 | 3300025226 | Bacteria | 9451 |
| 39 | Ga0209759_1001394 | 3300025256 | Bacteria | 13855 |
| 40 | Ga0209673_1000102 | 3300025273 | Bacteria | 189583 |
| 41 | Ga0209564_1004088 | 3300025295 | Bacteria | 9191 |
| 42 | Ga0209564_1009019 | 3300025295 | Bacteria | 4811 |
| 43 | Ga0209758_1002175 | 3300025297 | Bacteria | 20600 |
| 44 | Ga0209050_1001237 | 3300025298 | Bacteria | 29567 |
| 45 | Ga0207426_1000838 | 3300025302 | Bacteria | 32556 |
| 46 | Ga0207684_10028406 | 3300025910 | Bacteria | 4766 |
| 47 | Ga0207695_10000036 | 3300025913 | Bacteria | 477897 |
| 48 | Ga0207695_10026015 | 3300025913 | Bacteria | 6537 |
| 49 | Ga0207660_10003758 | 3300025917 | Bacteria | 9887 |
| 50 | Ga0207652_10015796 | 3300025921 | Bacteria | 6150 |
| 51 | Ga0207694_10000081 | 3300025924 | Bacteria | 111177 |
| 52 | Ga0207650_10024482 | 3300025925 | Bacteria | 4291 |
| 53 | Ga0207690_10003835 | 3300025932 | Bacteria | 8897 |
| 54 | Ga0207667_10020156 | 3300025949 | Bacteria | 7424 |
| 55 | Ga0209281_1003077 | 3300027111 | Bacteria | 5849 |
| 56 | Ga0265318_10006658 | 3300028577 | Bacteria | 5300 |
| 57 | Ga0265338_10001284 | 3300028800 | Bacteria | 41213 |
| 58 | Ga0265338_10023163 | 3300028800 | Bacteria | 6395 |
| 59 | Ga0265330_10000114 | 3300031235 | Bacteria | 65529 |
| 60 | Ga0265330_10000485 | 3300031235 | Bacteria | 26602 |
| 61 | Ga0265332_10000272 | 3300031238 | Bacteria | 41154 |
| 62 | Ga0265325_10001521 | 3300031241 | Bacteria | 16255 |
| 63 | Ga0265329_10004770 | 3300031242 | Unclassified | 5575 |
| 64 | Ga0265339_10018183 | 3300031249 | Bacteria | 4148 |
| 65 | Ga0265327_10014359 | 3300031251 | Bacteria | 5187 |
| 66 | Ga0265316_10000032 | 3300031344 | Bacteria | 160775 |
| 67 | Ga0265316_10002732 | 3300031344 | Bacteria | 18099 |
| 68 | Ga0265314_10000004 | 3300031711 | Bacteria | 939480 |
| 69 | Ga0265342_10000162 | 3300031712 | Bacteria | 75047 |
| 70 | Ga0395905_0007006 | 3300037471 | Bacteria | 11269 |
| 71 | Ga0439456_000559 | 3300042013 | Bacteria | 7793 |
| 72 | Ga0451577_0001460 | 3300042876 | Bacteria | 31395 |
| 73 | Ga0451577_0020610 | 3300042876 | Bacteria | 6047 |
| 74 | Ga0453683_0000157 | 3300044673 | Bacteria | 99964 |
| 75 | Ga0453683_0000738 | 3300044673 | Bacteria | 33377 |
| 76 | Ga0453683_0001965 | 3300044673 | Bacteria | 16663 |
| 77 | Ga0453683_0002027 | 3300044673 | Bacteria | 16315 |
| 78 | Ga0453684_0000531 | 3300044712 | Bacteria | 145390 |
| 79 | Ga0453684_0000759 | 3300044712 | Bacteria | 112043 |
| 80 | Ga0453684_0000834 | 3300044712 | Archaea | 103977 |
| 81 | Ga0453684_0000837 | 3300044712 | Bacteria | 103906 |
| 82 | Ga0453684_0000885 | 3300044712 | Bacteria | 100131 |
| 83 | Ga0453684_0010450 | 3300044712 | Bacteria | 15872 |
| 84 | Ga0453684_0032103 | 3300044712 | Bacteria | 7358 |
| 85 | Ga0453684_0044947 | 3300044712 | Bacteria | 5899 |
| 86 | Ga0453684_0060285 | 3300044712 | Bacteria | 4882 |
| 87 | Ga0466959_0000015 | 3300045049 | Bacteria | 149242 |
| 88 | Ga0451576_0000212 | 3300045051 | Bacteria | 145396 |
| 89 | Ga0451576_0000346 | 3300045051 | Bacteria | 112037 |
| 90 | Ga0451576_0003258 | 3300045051 | Bacteria | 22524 |
| 91 | Ga0451576_0003649 | 3300045051 | Bacteria | 20897 |
| 92 | Ga0451576_0004943 | 3300045051 | Bacteria | 16969 |
| 93 | Ga0451576_0011580 | 3300045051 | Bacteria | 10002 |
| 94 | Ga0495650_0001337 | 3300046471 | Bacteria | 24602 |
| 95 | Ga0495580_0000583 | 3300046472 | Bacteria | 30806 |
| 96 | Ga0495584_0001097 | 3300046491 | Bacteria | 16808 |
| 97 | Ga0495584_0001351 | 3300046491 | Bacteria | 14837 |
| 98 | Ga0495583_0001134 | 3300046506 | Bacteria | 29161 |
| 99 | Ga0495620_0000539 | 3300046515 | Bacteria | 24080 |
| 100 | Ga0495648_0015165 | 3300046524 | Bacteria | 5610 |
| 101 | Ga0495668_0002651 | 3300046616 | Bacteria | 14383 |
| 102 | Ga0495611_0000696 | 3300046648 | Bacteria | 19078 |
| 103 | Ga0495625_0000798 | 3300046660 | Bacteria | 43556 |
| 104 | Ga0496102_0000355 | 3300048905 | Bacteria | 55552 |
| 105 | Ga0496103_0000600 | 3300048906 | Bacteria | 28303 |
| 106 | Ga0496104_0011386 | 3300048907 | Bacteria | 7963 |
| 107 | Ga0496110_0012957 | 3300048913 | Bacteria | 6876 |
| 108 | Ga0496112_0000552 | 3300048915 | Bacteria | 25704 |
| 109 | Ga0496115_0000220 | 3300048918 | Bacteria | 52439 |
| 110 | Ga0496116_0003279 | 3300048919 | Bacteria | 16096 |
| 111 | Ga0496117_0000715 | 3300048920 | Bacteria | 52465 |
| 112 | Ga0496118_0000130 | 3300048921 | Bacteria | 133250 |
| 113 | Ga0496119_0011913 | 3300048922 | Bacteria | 7134 |
| 114 | Ga0496119_0035157 | 3300048922 | Bacteria | 3287 |
| 115 | Ga0496120_0000578 | 3300048923 | Bacteria | 55746 |
| 116 | Ga0496121_0000375 | 3300048924 | Bacteria | 91802 |
| 117 | Ga0496122_0011330 | 3300048925 | Bacteria | 9048 |
| 118 | Ga0496124_0000163 | 3300048927 | Bacteria | 135337 |
| 119 | Ga0496124_0001619 | 3300048927 | Bacteria | 32268 |
| 120 | Ga0496124_0002114 | 3300048927 | Bacteria | 26745 |
| 121 | Ga0496124_0046846 | 3300048927 | Bacteria | 3701 |
| 122 | Ga0496125_0007688 | 3300048928 | Bacteria | 11424 |
| 123 | Ga0496126_0000361 | 3300048929 | Bacteria | 94834 |
| 124 | Ga0496126_0008663 | 3300048929 | Bacteria | 10928 |
| 125 | Ga0501032_0009963 | 3300049569 | Bacteria | 6862 |
| 126 | Ga0501032_0026910 | 3300049569 | Bacteria | 3954 |
| 127 | Ga0501034_0009354 | 3300049571 | Bacteria | 10267 |
| 128 | Ga0501037_0000355 | 3300049573 | Bacteria | 38577 |
| 129 | Ga0501037_0012196 | 3300049573 | Bacteria | 6326 |
| 130 | Ga0501043_0014787 | 3300049579 | Bacteria | 6111 |
| 131 | Ga0501044_0002941 | 3300049823 | Bacteria | 19375 |
| 132 | Ga0501044_0055068 | 3300049823 | Bacteria | 4086 |
| 133 | Ga0501226_000077 | 3300049853 | Bacteria | 29450 |
| 134 | nmdc:mga0k408_235_c1 | 3300050493 | Bacteria | 29654 |
| 135 | nmdc:mga0qj67_31784_c1 | 3300050509 | Bacteria | 4113 |
| 136 | nmdc:mga0n895_3127_c1 | 3300050512 | Bacteria | 13197 |
| 137 | Ga0500610_0000026 | 3300053079 | Bacteria | 54341 |
| 138 | 2510131506 | 2510065019 | Bacteria | 6903379 |
| 139 | 2511325423 | 2511231016 | Bacteria | 6704427 |
| 140 | 2515681805 | 2515154122 | Bacteria | 8609520 |
| 141 | 2547698939 | 2547132181 | Bacteria | 4945084 |
| 142 | 2585198538 | 2582581293 | Bacteria | 5907401 |
| 143 | 2585281028 | 2582581308 | Bacteria | 7413247 |
| 144 | 2597812036 | 2597489875 | Bacteria | 7010078 |
| 145 | 2739034589 | 2738541333 | Bacteria | 7106503 |
| 146 | 2739054166 | 2738541337 | Bacteria | 6183410 |
| 147 | 2883580826 | 2883577096 | Bacteria | 4709178 |
| 148 | 2954727024 | 2954721474 | Bacteria | 10456478 |
| 149 | 2958460230 | 2958458903 | Bacteria | 5301041 |
| 150 | 2979103033 | 2979100975 | Bacteria | 5423623 |
| 151 | 8057136387 | 8057132660 | Bacteria | 4061191 |
| 152 | Ga0065714_10002183 | |||
| 153 | MRS1b_contig_5741860 | |||
| 154 | rootH2_10001057 | |||
| 155 | rootL2_10027007 | |||
| 156 | rootH1_10041701 | |||
| 157 | JGI25160J50197_1000347 | |||
| 158 | Ga0055528_1001622 | |||
| 159 | Ga0055530_10001667 | |||
| 160 | Ga0065712_10000116 | |||
| 161 | Ga0065712_10000197 | |||
| 162 | Ga0065715_10088944 | |||
| 163 | Ga0065715_10089569 | |||
| 164 | Ga0070670_100035097 | |||
| 165 | Ga0070680_100005077 | |||
| 166 | Ga0070659_100005836 | |||
| 167 | Ga0070701_10000482 | |||
| 168 | Ga0068859_100000009 | |||
| 169 | Ga0081455_10019512 | |||
| 170 | Ga0081539_10002226 | |||
| 171 | Ga0075366_10000649 | |||
| 172 | Ga0075434_100012152 | |||
| 173 | Ga0097620_100000009 | |||
| 174 | Ga0079104_1003106 | |||
| 175 | Ga0105240_10000024 | |||
| 176 | Ga0105240_10002843 | |||
| 177 | Ga0114129_10038492 | |||
| 178 | Ga0105238_10000569 | |||
| 179 | Ga0105239_10001290 | |||
| 180 | Ga0157373_10001770 | |||
| 181 | Ga0157371_10017104 | |||
| 182 | Ga0157370_10000219 | |||
| 183 | Ga0157370_10000226 | |||
| 184 | Ga0157370_10006515 | |||
| 185 | Ga0157369_10015121 | |||
| 186 | Ga0182006_1002356 | |||
| 187 | Ga0182007_10002716 | |||
| 188 | Ga0163161_10015290 | |||
| 189 | Ga0209674_100918 | |||
| 190 | Ga0209759_1001394 | |||
| 191 | Ga0209673_1000102 | |||
| 192 | Ga0209564_1004088 | |||
| 193 | Ga0209564_1009019 | |||
| 194 | Ga0209758_1002175 | |||
| 195 | Ga0209050_1001237 | |||
| 196 | Ga0207426_1000838 | |||
| 197 | Ga0207684_10028406 | |||
| 198 | Ga0207695_10000036 | |||
| 199 | Ga0207695_10026015 | |||
| 200 | Ga0207660_10003758 | |||
| 201 | Ga0207652_10015796 | |||
| 202 | Ga0207694_10000081 | |||
| 203 | Ga0207650_10024482 | |||
| 204 | Ga0207690_10003835 | |||
| 205 | Ga0207667_10020156 | |||
| 206 | Ga0209281_1003077 | |||
| 207 | Ga0265318_10006658 | |||
| 208 | Ga0265338_10001284 | |||
| 209 | Ga0265338_10023163 | |||
| 210 | Ga0265330_10000114 | |||
| 211 | Ga0265330_10000485 | |||
| 212 | Ga0265332_10000272 | |||
| 213 | Ga0265325_10001521 | |||
| 214 | Ga0265329_10004770 | |||
| 215 | Ga0265339_10018183 | |||
| 216 | Ga0265327_10014359 | |||
| 217 | Ga0265316_10000032 | |||
| 218 | Ga0265316_10002732 | |||
| 219 | Ga0265314_10000004 | |||
| 220 | Ga0265342_10000162 | |||
| 221 | Ga0395905_0007006 | |||
| 222 | Ga0439456_000559 | |||
| 223 | Ga0451577_0001460 | |||
| 224 | Ga0451577_0020610 | |||
| 225 | Ga0453683_0000157 | |||
| 226 | Ga0453683_0000738 | |||
| 227 | Ga0453683_0001965 | |||
| 228 | Ga0453683_0002027 | |||
| 229 | Ga0453684_0000531 | |||
| 230 | Ga0453684_0000759 | |||
| 231 | Ga0453684_0000834 | |||
| 232 | Ga0453684_0000837 | |||
| 233 | Ga0453684_0000885 | |||
| 234 | Ga0453684_0010450 | |||
| 235 | Ga0453684_0032103 | |||
| 236 | Ga0453684_0044947 | |||
| 237 | Ga0453684_0060285 | |||
| 238 | Ga0466959_0000015 | |||
| 239 | Ga0451576_0000212 | |||
| 240 | Ga0451576_0000346 | |||
| 241 | Ga0451576_0003258 | |||
| 242 | Ga0451576_0003649 | |||
| 243 | Ga0451576_0004943 | |||
| 244 | Ga0451576_0011580 | |||
| 245 | Ga0495650_0001337 | |||
| 246 | Ga0495580_0000583 | |||
| 247 | Ga0495584_0001097 | |||
| 248 | Ga0495584_0001351 | |||
| 249 | Ga0495583_0001134 | |||
| 250 | Ga0495620_0000539 | |||
| 251 | Ga0495648_0015165 | |||
| 252 | Ga0495668_0002651 | |||
| 253 | Ga0495611_0000696 | |||
| 254 | Ga0495625_0000798 | |||
| 255 | Ga0496102_0000355 | |||
| 256 | Ga0496103_0000600 | |||
| 257 | Ga0496104_0011386 | |||
| 258 | Ga0496110_0012957 | |||
| 259 | Ga0496112_0000552 | |||
| 260 | Ga0496115_0000220 | |||
| 261 | Ga0496116_0003279 | |||
| 262 | Ga0496117_0000715 | |||
| 263 | Ga0496118_0000130 | |||
| 264 | Ga0496119_0011913 | |||
| 265 | Ga0496119_0035157 | |||
| 266 | Ga0496120_0000578 | |||
| 267 | Ga0496121_0000375 | |||
| 268 | Ga0496122_0011330 | |||
| 269 | Ga0496124_0000163 | |||
| 270 | Ga0496124_0001619 | |||
| 271 | Ga0496124_0002114 | |||
| 272 | Ga0496124_0046846 | |||
| 273 | Ga0496125_0007688 | |||
| 274 | Ga0496126_0000361 | |||
| 275 | Ga0496126_0008663 | |||
| 276 | Ga0501032_0009963 | |||
| 277 | Ga0501032_0026910 | |||
| 278 | Ga0501034_0009354 | |||
| 279 | Ga0501037_0000355 | |||
| 280 | Ga0501037_0012196 | |||
| 281 | Ga0501043_0014787 | |||
| 282 | Ga0501044_0002941 | |||
| 283 | Ga0501044_0055068 | |||
| 284 | Ga0501226_000077 | |||
| 285 | nmdc:mga0k408_235_c1 | |||
| 286 | nmdc:mga0qj67_31784_c1 | |||
| 287 | nmdc:mga0n895_3127_c1 | |||
| 288 | Ga0500610_0000026 | |||
| 289 | 2510131506 | |||
| 290 | 2511325423 | |||
| 291 | 2515681805 | |||
| 292 | 2547698939 | |||
| 293 | 2585198538 | |||
| 294 | 2585281028 | |||
| 295 | 2597812036 | |||
| 296 | 2739034589 | |||
| 297 | 2739054166 | |||
| 298 | 2883580826 | |||
| 299 | 2954727024 | |||
| 300 | 2958460230 | |||
| 301 | 2979103033 | |||
| 302 | 8057136387 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 4crw-assembly1.cif.gz_B | complex of human ddx6 (reca-c) and cnot1 (mif4g) | 0.7421 | 567 | 725 |
| 2yjt-assembly1.cif.gz_D | crystal structure of e. coli dead-box protein srmb bound to regulator of ribonuclease activity a (rraa) | 0.6993 | 567 | 723 |
| 7dtk-assembly1.cif.gz_A | crystal structure of the reca1 domain of rna helicase cgh-1 in c. elegans | 0.6969 | 284 | 487 |
| 7pmq-assembly1.cif.gz_C | dead-box helicase dbpa in the active conformation bound to a hairpin loop rna and adp/bef3 | 0.69 | 289 | 723 |
| 1vec-assembly1.cif.gz_A | crystal structure of the n-terminal domain of rck/p54, a human dead-box protein | 0.6847 | 284 | 487 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| af_O13983_528_690_3.40.50.300 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases | 0.801 | 568 | 726 | 3.40.50.300 |
| af_Q60295_621_722_3.40.50.300 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases | 0.7977 | 659 | 749 | 3.40.50.300 |
| af_Q4D326_447_598_3.40.50.300 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases | 0.7791 | 567 | 722 | 3.40.50.300 |
| af_F1MAM8_273_438_3.40.50.300 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases | 0.7737 | 568 | 723 | 3.40.50.300 |
| af_P0CX21_1025_1146_3.40.50.300 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases | 0.7714 | 567 | 727 | 3.40.50.300 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A7X7MTD2-F1-model_v4 | type I site-specific deoxyribonuclease (EC 3.1.21.3) | 0.9899 | 1 | 365 |
GO:0003677
GO:0004519 GO:0005524 GO:0009307 |
| AF-A0A5Q4GY97-F1-model_v4 | type I site-specific deoxyribonuclease (EC 3.1.21.3) | 0.9879 | 136 | 218 |
GO:0003677
GO:0005524 GO:0009035 GO:0009307 |
| AF-A0A7X7MTD2-F1-model_v4 | type I site-specific deoxyribonuclease (EC 3.1.21.3) | 0.9872 | 1 | 365 |
GO:0003677
GO:0004519 GO:0005524 GO:0009307 |
| AF-A0A2M8BI01-F1-model_v4 | type I site-specific deoxyribonuclease (EC 3.1.21.3) | 0.9838 | 1 | 209 |
GO:0003677
GO:0005524 GO:0009035 GO:0009307 |
| AF-A0A2D3W5T1-F1-model_v4 | type I site-specific deoxyribonuclease (EC 3.1.21.3) | 0.9807 | 2 | 359 |
GO:0003677
GO:0005524 GO:0009035 GO:0009307 |