F210162
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 150 | 112 | 300 | 520 |
Family's Representative Sequence
| Representative Sequence | iso_pu_bacteria|2881955468|2881958002 |
| Length | 559 |
| Sequence | TAIVPVTMPVWWPFCLSTICYSFMHHTLLLVLGLLFAVLMLVMLAQKVKVAYPIFLVIAGLVISFIPGLPRISLKPDLIFTIFLPPLLYEAAWYTSWKDFWKWKRPISLLAFGLVFFTSMVVAYCANSFIPGFTLALGFLLGGIISPPDAVAAATVLKGLKVPKRILTILEGESLVNDASSLIVFRFALAAILTGSFSMQQATGQFFLVAGMGVLIGLAGAHIMYVIHRFLPTNAATDAAFTVMTPYMLFLGAEQFHFSGVMAVVSGGLFISFRAHEVFRSGHSRMNMLGVWTTMIFIMNALVFILIGLALPDVIEGLGDYSIKDAIIYGLIISAIAIILRMLWVFPAAHLPRLLSSSIRRDPSPGWKGPLIISWAGMRGVVSLATALSIPLFMDDKVTPFPHRSLIIFITFVVIFVTLVFQGLTLPLIIKWTGIKEIDIIAPENEQQAGIRFNLNKVALQQINEHHNHHLDVNEFLRQLKAELEADLQMTQQKLESLGCNMDEHGRIQSFNHILLDLYHIQRQELFRLRRENLFSDSEIRKAELQLDLSEMKVTGISH |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 2162886007 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 | Metagenome | Rhizosphere |
| 2 | 3300002737 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA | Metagenome | Endosphere |
| 3 | 3300003320 | Sugarcane root Sample H2 | Metagenome | Unclassified |
| 4 | 3300003323 | Sugarcane root Sample H1 | Metagenome | Unclassified |
| 5 | 3300003781 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 | Metagenome | Endosphere |
| 6 | 3300005262 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) | Metagenome | Endosphere |
| 7 | 3300005288 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) | Metagenome | Rhizosphere |
| 8 | 3300005289 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) | Metagenome | Rhizosphere |
| 9 | 3300005337 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG | Metagenome | Rhizosphere |
| 10 | 3300005339 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG | Metagenome | Rhizosphere |
| 11 | 3300005347 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG | Metagenome | Rhizosphere |
| 12 | 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Metagenome | Rhizosphere |
| 13 | 3300009036 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG | Metagenome | Rhizosphere |
| 14 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 15 | 3300009148 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG | Metagenome | Rhizosphere |
| 16 | 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Metagenome | Rhizosphere |
| 17 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 18 | 3300013100 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG | Metagenome | Rhizosphere |
| 19 | 3300013102 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG | Metagenome | Rhizosphere |
| 20 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 21 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 22 | 3300014497 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG | Metagenome | Rhizosphere |
| 23 | 3300015261 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG | Metagenome | Rhizosphere |
| 24 | 3300015262 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG | Metagenome | Rhizosphere |
| 25 | 3300015265 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG | Metagenome | Rhizosphere |
| 26 | 3300015682 | Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 | Metagenome | Rhizosphere |
| 27 | 3300017792 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG | Metagenome | Rhizosphere |
| 28 | 3300025233 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) | Metagenome | Endosphere |
| 29 | 3300025250 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) | Metagenome | Unclassified |
| 30 | 3300025291 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 31 | 3300025292 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 32 | 3300025298 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 33 | 3300025728 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 34 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 35 | 3300025914 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 36 | 3300025919 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 37 | 3300025935 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 38 | 3300025972 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 39 | 3300028794 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM | Metagenome | Unclassified |
| 40 | 3300030521 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM | Metagenome | Unclassified |
| 41 | 3300031731 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 | Metagenome | Rhizosphere |
| 42 | 3300031901 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 | Metagenome | Rhizosphere |
| 43 | 3300031903 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 | Metagenome | Rhizosphere |
| 44 | 3300031911 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 | Metagenome | Rhizosphere |
| 45 | 3300032002 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 | Metagenome | Rhizosphere |
| 46 | 3300032004 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 | Metagenome | Rhizosphere |
| 47 | 3300033180 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM | Metagenome | Unclassified |
| 48 | 3300037853 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 | Metagenome | Unclassified |
| 49 | 3300044683 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R | Metagenome | Rhizosphere |
| 50 | 3300046453 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere | Metagenome | Rhizosphere |
| 51 | 3300046457 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere | Metagenome | Rhizosphere |
| 52 | 3300046507 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere | Metagenome | Rhizosphere |
| 53 | 3300046519 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere | Metagenome | Rhizosphere |
| 54 | 3300046538 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere | Metagenome | Rhizosphere |
| 55 | 3300046558 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere | Metagenome | Rhizosphere |
| 56 | 3300046648 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere | Metagenome | Rhizosphere |
| 57 | 3300046660 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere | Metagenome | Rhizosphere |
| 58 | 3300047320 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere | Metagenome | Rhizosphere |
| 59 | 3300047472 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere | Metagenome | Rhizosphere |
| 60 | 3300048908 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 | Metagenome | Rhizoplane |
| 61 | 3300048919 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled | Metagenome | Unclassified |
| 62 | 3300048920 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 | Metagenome | Unclassified |
| 63 | 3300048921 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 | Metagenome | Unclassified |
| 64 | 3300048922 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 | Metagenome | Unclassified |
| 65 | 3300048924 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 | Metagenome | Unclassified |
| 66 | 3300048925 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled | Metagenome | Unclassified |
| 67 | 3300048926 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled | Metagenome | Unclassified |
| 68 | 3300048927 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 | Metagenome | Unclassified |
| 69 | 3300048928 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 | Metagenome | Unclassified |
| 70 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 71 | 3300049679 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought | Metagenome | Rhizosphere |
| 72 | 3300053088 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere | Metagenome | Endosphere |
| 73 | 3300053093 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere | Metagenome | Endosphere |
| 74 | 3300053125 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere | Metagenome | Endosphere |
| 75 | 3300053136 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere | Metagenome | Endosphere |
| 76 | 3300053156 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere | Metagenome | Endosphere |
| 77 | 3300053160 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere | Metagenome | Endosphere |
| 78 | 3300055283 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere | Metagenome | Endosphere |
| 79 | 2881955468 | Edaphocola flava HME-24 | Isolate | Rhizosphere |
| 80 | 2582581278 | Chryseobacterium sp. CF365 | Isolate | Rhizosphere |
| 81 | 2585428045 | Chryseobacterium sp. OV705 | Isolate | Rhizosphere |
| 82 | 2585428060 | Chryseobacterium sp. OV715 | Isolate | Rhizosphere |
| 83 | 2585428182 | Chryseobacterium sp. YR477 | Isolate | Rhizosphere |
| 84 | 2585428183 | Chryseobacterium sp. YR485 | Isolate | Rhizosphere |
| 85 | 2585428185 | Chryseobacterium sp. YR459 | Isolate | Rhizosphere |
| 86 | 2585428187 | Chryseobacterium sp. YR460 | Isolate | Rhizosphere |
| 87 | 2588253712 | Chryseobacterium sp. OV279 | Isolate | Rhizosphere |
| 88 | 2588254255 | Chryseobacterium sp. YR221 | Isolate | Rhizosphere |
| 89 | 2728369107 | Chryseobacterium kwangjuense KJ1R5 | Isolate | Unclassified |
| 90 | 2739367651 | Pedobacter sp. OK291 | Isolate | Unclassified |
| 91 | 2739367663 | Pedobacter sp. YR510 | Isolate | Unclassified |
| 92 | 2765235839 | Chryseobacterium indologenes AA5 | Isolate | Unclassified |
| 93 | 2772190705 | Chryseobacterium contaminans C-26 | Isolate | Rhizosphere |
| 94 | 2816332188 | Chryseobacterium aquifrigidense 110 (version 2) | Isolate | Unclassified |
| 95 | 2818991442 | Chitinophaga pinensis 1204 | Isolate | Unclassified |
| 96 | 2821136567 | Chitinophaga sancti 1232 | Isolate | Unclassified |
| 97 | 2842722452 | Pedobacter sp. R-72249 | Isolate | Unclassified |
| 98 | 2842909656 | Pedobacter sp. R-72393 | Isolate | Unclassified |
| 99 | 2849281842 | Pedobacter sp. AK013 | Isolate | Rhizosphere |
| 100 | 2857627736 | Pedobacter sp. R-74587 | Isolate | Unclassified |
| 101 | 2871720351 | Chryseobacterium sp. KLBC 52 | Isolate | Nodule |
| 102 | 2889290771 | Chryseobacterium sp. PvR013 | Isolate | Rhizosphere |
| 103 | 2902048731 | Pedobacter ureilyticus THG-T11 | Isolate | Rhizosphere |
| 104 | 2904467357 | Chitinophaga sancti 3198 | Isolate | Unclassified |
| 105 | 2914759650 | Rhizosphaericola mali | Isolate | Rhizosphere |
| 106 | 2929239360 | Chitinophaga sp. R-73072 Hybrid assembly | Isolate | Unclassified |
| 107 | 2945997725 | Pedobacter sp. W3I1 | Isolate | Rhizosphere |
| 108 | 2946019816 | Chryseobacterium sp. W4I1 | Isolate | Rhizosphere |
| 109 | 2954016120 | Flavobacterium sp. W4I14 | Isolate | Rhizosphere |
| 110 | 2977232053 | Mucilaginibacter terrae SORGH_AS 422 | Isolate | Unclassified |
| 111 | 2993372514 | Chryseobacterium sp. SLBN-27 | Isolate | Rhizosphere |
| 112 | 2993480792 | Chryseobacterium nepalense SLBN-92 | Isolate | Rhizosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 76.67 |
| Metatranscriptomes | 0 |
| Isolates | 23.33 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 10 |
| Nodule | 0.67 |
| Rhizoplane | 0.67 |
| Rhizosphere | 62.67 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 2.67 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | SwRhRL2b_contig_301064 | 2162886007 | Bacteria | 32696 |
| 2 | SwRhRL2b_contig_934455 | 2162886007 | Bacteria | 2303 |
| 3 | JGI25162J39368_1000005 | 3300002737 | Bacteria | 435925 |
| 4 | rootH2_10016295 | 3300003320 | Bacteria | 51846 |
| 5 | rootH1_10043049 | 3300003323 | Bacteria | 14059 |
| 6 | rootH1_10163754 | 3300003323 | Bacteria | 5173 |
| 7 | Ga0055536_1000001 | 3300003781 | Bacteria | 630663 |
| 8 | Ga0065165_1009325 | 3300005262 | Bacteria | 4416 |
| 9 | Ga0065714_10002864 | 3300005288 | Bacteria | 54801 |
| 10 | Ga0065714_10005614 | 3300005288 | Bacteria | 7326 |
| 11 | Ga0065714_10093182 | 3300005288 | Bacteria | 1855 |
| 12 | Ga0065704_10000229 | 3300005289 | Bacteria | 80338 |
| 13 | Ga0065704_10075560 | 3300005289 | Bacteria | 5530 |
| 14 | Ga0065704_10083722 | 3300005289 | Bacteria | 3427 |
| 15 | Ga0065704_10085176 | 3300005289 | Bacteria | 3252 |
| 16 | Ga0070682_100000122 | 3300005337 | Bacteria | 69084 |
| 17 | Ga0070660_100021313 | 3300005339 | Bacteria | 4777 |
| 18 | Ga0070668_100091818 | 3300005347 | Bacteria | 2394 |
| 19 | Ga0068853_100007024 | 3300005539 | Bacteria | 9000 |
| 20 | Ga0105244_10000010 | 3300009036 | Bacteria | 265799 |
| 21 | Ga0105240_10000356 | 3300009093 | Bacteria | 85978 |
| 22 | Ga0105240_10010978 | 3300009093 | Bacteria | 12686 |
| 23 | Ga0105243_10000201 | 3300009148 | Bacteria | 69844 |
| 24 | Ga0105243_10242145 | 3300009148 | Bacteria | 1606 |
| 25 | Ga0105237_10000284 | 3300009545 | Bacteria | 69955 |
| 26 | Ga0105239_10002123 | 3300010375 | Bacteria | 25586 |
| 27 | Ga0157373_10000019 | 3300013100 | Bacteria | 166579 |
| 28 | Ga0157373_10000261 | 3300013100 | Bacteria | 42879 |
| 29 | Ga0157373_10011785 | 3300013100 | Bacteria | 6421 |
| 30 | Ga0157371_10000012 | 3300013102 | Bacteria | 355318 |
| 31 | Ga0157371_10007408 | 3300013102 | Bacteria | 8889 |
| 32 | Ga0157370_10000350 | 3300013104 | Bacteria | 58500 |
| 33 | Ga0157370_10000684 | 3300013104 | Bacteria | 42223 |
| 34 | Ga0157370_10015766 | 3300013104 | Bacteria | 7670 |
| 35 | Ga0157370_10037665 | 3300013104 | Bacteria | 4686 |
| 36 | Ga0157370_10146754 | 3300013104 | Unclassified | 2196 |
| 37 | Ga0157369_10000006 | 3300013105 | Bacteria | 412230 |
| 38 | Ga0157369_10000731 | 3300013105 | Bacteria | 42343 |
| 39 | Ga0182008_10000015 | 3300014497 | Bacteria | 243121 |
| 40 | Ga0182006_1000068 | 3300015261 | Bacteria | 144823 |
| 41 | Ga0182006_1000886 | 3300015261 | Bacteria | 20085 |
| 42 | Ga0182006_1016839 | 3300015261 | Unclassified | 3115 |
| 43 | Ga0182007_10000001 | 3300015262 | Bacteria | 1127301 |
| 44 | Ga0182005_1000876 | 3300015265 | Bacteria | 13338 |
| 45 | Ga0183373_1001 | 3300015682 | Bacteria | 1410374 |
| 46 | Ga0163161_10000089 | 3300017792 | Bacteria | 91093 |
| 47 | Ga0163161_10000341 | 3300017792 | Bacteria | 39792 |
| 48 | Ga0163161_10086714 | 3300017792 | Bacteria | 2311 |
| 49 | Ga0209437_100043 | 3300025233 | Bacteria | 440454 |
| 50 | Ga0209026_1004141 | 3300025250 | Bacteria | 4451 |
| 51 | Ga0209675_1000094 | 3300025291 | Bacteria | 138083 |
| 52 | Ga0209676_1000008 | 3300025292 | Bacteria | 991778 |
| 53 | Ga0209050_1000045 | 3300025298 | Bacteria | 388022 |
| 54 | Ga0207655_1000347 | 3300025728 | Bacteria | 67127 |
| 55 | Ga0207695_10000209 | 3300025913 | Bacteria | 157802 |
| 56 | Ga0207695_10000300 | 3300025913 | Bacteria | 122104 |
| 57 | Ga0207671_10000650 | 3300025914 | Bacteria | 45400 |
| 58 | Ga0207657_10055109 | 3300025919 | Bacteria | 3435 |
| 59 | Ga0207709_10000312 | 3300025935 | Bacteria | 52932 |
| 60 | Ga0207668_10053988 | 3300025972 | Bacteria | 2787 |
| 61 | Ga0307515_10000174 | 3300028794 | Bacteria | 157501 |
| 62 | Ga0307515_10000190 | 3300028794 | Bacteria | 150300 |
| 63 | Ga0307511_10000002 | 3300030521 | Bacteria | 199923 |
| 64 | Ga0307405_10000018 | 3300031731 | Bacteria | 182495 |
| 65 | Ga0307406_10050967 | 3300031901 | Bacteria | 2626 |
| 66 | Ga0307407_10000015 | 3300031903 | Bacteria | 143258 |
| 67 | Ga0307412_10000045 | 3300031911 | Bacteria | 165021 |
| 68 | Ga0307416_100000025 | 3300032002 | Bacteria | 178154 |
| 69 | Ga0307414_10000662 | 3300032004 | Bacteria | 17629 |
| 70 | Ga0307414_10002634 | 3300032004 | Bacteria | 9440 |
| 71 | Ga0307414_10008026 | 3300032004 | Bacteria | 5967 |
| 72 | Ga0307414_10012014 | 3300032004 | Bacteria | 5105 |
| 73 | Ga0307414_10022457 | 3300032004 | Unclassified | 3980 |
| 74 | Ga0307510_10000141 | 3300033180 | Bacteria | 59562 |
| 75 | Ga0436364_0224806 | 3300037853 | Bacteria | 18620 |
| 76 | Ga0466965_0013312 | 3300044683 | Bacteria | 3881 |
| 77 | Ga0495627_008068 | 3300046453 | Bacteria | 3970 |
| 78 | Ga0495627_022866 | 3300046453 | Bacteria | 2053 |
| 79 | Ga0495590_0006622 | 3300046457 | Bacteria | 4515 |
| 80 | Ga0495606_0013107 | 3300046507 | Bacteria | 6583 |
| 81 | Ga0495632_0005404 | 3300046519 | Bacteria | 8453 |
| 82 | Ga0495609_0000025 | 3300046538 | Bacteria | 256898 |
| 83 | Ga0495633_0000152 | 3300046558 | Bacteria | 91044 |
| 84 | Ga0495633_0008534 | 3300046558 | Bacteria | 5759 |
| 85 | Ga0495611_0000030 | 3300046648 | Bacteria | 111786 |
| 86 | Ga0495625_0001869 | 3300046660 | Bacteria | 23924 |
| 87 | Ga0495672_0009625 | 3300047320 | Bacteria | 6975 |
| 88 | Ga0495686_0000151 | 3300047472 | Bacteria | 135048 |
| 89 | Ga0495686_0074145 | 3300047472 | Bacteria | 2089 |
| 90 | Ga0496105_0134767 | 3300048908 | Bacteria | 2035 |
| 91 | Ga0496116_0000006 | 3300048919 | Bacteria | 811937 |
| 92 | Ga0496117_0000023 | 3300048920 | Bacteria | 438585 |
| 93 | Ga0496118_0000388 | 3300048921 | Bacteria | 74358 |
| 94 | Ga0496119_0000010 | 3300048922 | Bacteria | 438534 |
| 95 | Ga0496121_0000007 | 3300048924 | Bacteria | 942516 |
| 96 | Ga0496121_0018752 | 3300048924 | Bacteria | 6955 |
| 97 | Ga0496122_0000066 | 3300048925 | Bacteria | 231473 |
| 98 | Ga0496122_0000458 | 3300048925 | Bacteria | 84794 |
| 99 | Ga0496122_0003230 | 3300048925 | Bacteria | 21662 |
| 100 | Ga0496123_0000294 | 3300048926 | Bacteria | 97574 |
| 101 | Ga0496123_0014857 | 3300048926 | Bacteria | 6426 |
| 102 | Ga0496123_0053502 | 3300048926 | Bacteria | 2667 |
| 103 | Ga0496124_0000418 | 3300048927 | Bacteria | 76015 |
| 104 | Ga0496125_0000181 | 3300048928 | Bacteria | 138133 |
| 105 | Ga0496125_0007980 | 3300048928 | Bacteria | 11181 |
| 106 | Ga0496126_0001022 | 3300048929 | Bacteria | 47547 |
| 107 | Ga0501249_000014 | 3300049679 | Bacteria | 137700 |
| 108 | Ga0500644_0000292 | 3300053088 | Bacteria | 27065 |
| 109 | Ga0500651_0000233 | 3300053093 | Bacteria | 34519 |
| 110 | Ga0500618_000033 | 3300053125 | Bacteria | 121886 |
| 111 | Ga0500559_0018592 | 3300053136 | Bacteria | 2936 |
| 112 | Ga0500622_0002468 | 3300053156 | Bacteria | 13333 |
| 113 | Ga0500622_0028276 | 3300053156 | Bacteria | 2951 |
| 114 | Ga0500633_0008627 | 3300053160 | Unclassified | 2639 |
| 115 | Ga0500661_004198 | 3300055283 | Bacteria | 2696 |
| 116 | 2881958002 | 2881955468 | Bacteria | 3545609 |
| 117 | 2585145180 | 2582581278 | Bacteria | 5296881 |
| 118 | 2587677921 | 2585428045 | Bacteria | 5203023 |
| 119 | 2587748313 | 2585428060 | Bacteria | 5304711 |
| 120 | 2588209810 | 2585428182 | Bacteria | 5007281 |
| 121 | 2588215037 | 2585428183 | Bacteria | 5166119 |
| 122 | 2588222456 | 2585428185 | Bacteria | 4969476 |
| 123 | 2588234000 | 2585428187 | Bacteria | 4629388 |
| 124 | 2588444720 | 2588253712 | Bacteria | 5403181 |
| 125 | 2590604112 | 2588254255 | Bacteria | 5014294 |
| 126 | 2729199709 | 2728369107 | Bacteria | 5082720 |
| 127 | 2739588369 | 2739367651 | Bacteria | 6359826 |
| 128 | 2739644227 | 2739367663 | Bacteria | 5040914 |
| 129 | 2765573565 | 2765235839 | Bacteria | 5314748 |
| 130 | 2772606139 | 2772190705 | Bacteria | 4666226 |
| 131 | 2816873927 | 2816332188 | Bacteria | 5133218 |
| 132 | 2819575434 | 2818991442 | Bacteria | 8318214 |
| 133 | 2821137976 | 2821136567 | Bacteria | 8080116 |
| 134 | 2842723498 | 2842722452 | Bacteria | 6263924 |
| 135 | 2842910007 | 2842909656 | Bacteria | 6185908 |
| 136 | 2849284841 | 2849281842 | Bacteria | 6065644 |
| 137 | 2857631108 | 2857627736 | Bacteria | 5625397 |
| 138 | 2871722873 | 2871720351 | Bacteria | 4862476 |
| 139 | 2889295842 | 2889290771 | Bacteria | 5530962 |
| 140 | 2902050961 | 2902048731 | Bacteria | 4976191 |
| 141 | 2904468771 | 2904467357 | Bacteria | 8057758 |
| 142 | 2914762741 | 2914759650 | Bacteria | 4701441 |
| 143 | 2929243835 | 2929239360 | Bacteria | 7745570 |
| 144 | 2946000340 | 2945997725 | Bacteria | 6404843 |
| 145 | 2946022148 | 2946019816 | Bacteria | 4621265 |
| 146 | 2954017225 | 2954016120 | Bacteria | 6446024 |
| 147 | 2977233236 | 2977232053 | Bacteria | 5485925 |
| 148 | 2977233287 | 2977232053 | Bacteria | 5485925 |
| 149 | 2993372870 | 2993372514 | Bacteria | 4214139 |
| 150 | 2993483543 | 2993480792 | Bacteria | 4022225 |
| 151 | SwRhRL2b_contig_301064 | |||
| 152 | SwRhRL2b_contig_934455 | |||
| 153 | JGI25162J39368_1000005 | |||
| 154 | rootH2_10016295 | |||
| 155 | rootH1_10043049 | |||
| 156 | rootH1_10163754 | |||
| 157 | Ga0055536_1000001 | |||
| 158 | Ga0065165_1009325 | |||
| 159 | Ga0065714_10002864 | |||
| 160 | Ga0065714_10005614 | |||
| 161 | Ga0065714_10093182 | |||
| 162 | Ga0065704_10000229 | |||
| 163 | Ga0065704_10075560 | |||
| 164 | Ga0065704_10083722 | |||
| 165 | Ga0065704_10085176 | |||
| 166 | Ga0070682_100000122 | |||
| 167 | Ga0070660_100021313 | |||
| 168 | Ga0070668_100091818 | |||
| 169 | Ga0068853_100007024 | |||
| 170 | Ga0105244_10000010 | |||
| 171 | Ga0105240_10000356 | |||
| 172 | Ga0105240_10010978 | |||
| 173 | Ga0105243_10000201 | |||
| 174 | Ga0105243_10242145 | |||
| 175 | Ga0105237_10000284 | |||
| 176 | Ga0105239_10002123 | |||
| 177 | Ga0157373_10000019 | |||
| 178 | Ga0157373_10000261 | |||
| 179 | Ga0157373_10011785 | |||
| 180 | Ga0157371_10000012 | |||
| 181 | Ga0157371_10007408 | |||
| 182 | Ga0157370_10000350 | |||
| 183 | Ga0157370_10000684 | |||
| 184 | Ga0157370_10015766 | |||
| 185 | Ga0157370_10037665 | |||
| 186 | Ga0157370_10146754 | |||
| 187 | Ga0157369_10000006 | |||
| 188 | Ga0157369_10000731 | |||
| 189 | Ga0182008_10000015 | |||
| 190 | Ga0182006_1000068 | |||
| 191 | Ga0182006_1000886 | |||
| 192 | Ga0182006_1016839 | |||
| 193 | Ga0182007_10000001 | |||
| 194 | Ga0182005_1000876 | |||
| 195 | Ga0183373_1001 | |||
| 196 | Ga0163161_10000089 | |||
| 197 | Ga0163161_10000341 | |||
| 198 | Ga0163161_10086714 | |||
| 199 | Ga0209437_100043 | |||
| 200 | Ga0209026_1004141 | |||
| 201 | Ga0209675_1000094 | |||
| 202 | Ga0209676_1000008 | |||
| 203 | Ga0209050_1000045 | |||
| 204 | Ga0207655_1000347 | |||
| 205 | Ga0207695_10000209 | |||
| 206 | Ga0207695_10000300 | |||
| 207 | Ga0207671_10000650 | |||
| 208 | Ga0207657_10055109 | |||
| 209 | Ga0207709_10000312 | |||
| 210 | Ga0207668_10053988 | |||
| 211 | Ga0307515_10000174 | |||
| 212 | Ga0307515_10000190 | |||
| 213 | Ga0307511_10000002 | |||
| 214 | Ga0307405_10000018 | |||
| 215 | Ga0307406_10050967 | |||
| 216 | Ga0307407_10000015 | |||
| 217 | Ga0307412_10000045 | |||
| 218 | Ga0307416_100000025 | |||
| 219 | Ga0307414_10000662 | |||
| 220 | Ga0307414_10002634 | |||
| 221 | Ga0307414_10008026 | |||
| 222 | Ga0307414_10012014 | |||
| 223 | Ga0307414_10022457 | |||
| 224 | Ga0307510_10000141 | |||
| 225 | Ga0436364_0224806 | |||
| 226 | Ga0466965_0013312 | |||
| 227 | Ga0495627_008068 | |||
| 228 | Ga0495627_022866 | |||
| 229 | Ga0495590_0006622 | |||
| 230 | Ga0495606_0013107 | |||
| 231 | Ga0495632_0005404 | |||
| 232 | Ga0495609_0000025 | |||
| 233 | Ga0495633_0000152 | |||
| 234 | Ga0495633_0008534 | |||
| 235 | Ga0495611_0000030 | |||
| 236 | Ga0495625_0001869 | |||
| 237 | Ga0495672_0009625 | |||
| 238 | Ga0495686_0000151 | |||
| 239 | Ga0495686_0074145 | |||
| 240 | Ga0496105_0134767 | |||
| 241 | Ga0496116_0000006 | |||
| 242 | Ga0496117_0000023 | |||
| 243 | Ga0496118_0000388 | |||
| 244 | Ga0496119_0000010 | |||
| 245 | Ga0496121_0000007 | |||
| 246 | Ga0496121_0018752 | |||
| 247 | Ga0496122_0000066 | |||
| 248 | Ga0496122_0000458 | |||
| 249 | Ga0496122_0003230 | |||
| 250 | Ga0496123_0000294 | |||
| 251 | Ga0496123_0014857 | |||
| 252 | Ga0496123_0053502 | |||
| 253 | Ga0496124_0000418 | |||
| 254 | Ga0496125_0000181 | |||
| 255 | Ga0496125_0007980 | |||
| 256 | Ga0496126_0001022 | |||
| 257 | Ga0501249_000014 | |||
| 258 | Ga0500644_0000292 | |||
| 259 | Ga0500651_0000233 | |||
| 260 | Ga0500618_000033 | |||
| 261 | Ga0500559_0018592 | |||
| 262 | Ga0500622_0002468 | |||
| 263 | Ga0500622_0028276 | |||
| 264 | Ga0500633_0008627 | |||
| 265 | Ga0500661_004198 | |||
| 266 | 2881958002 | |||
| 267 | 2585145180 | |||
| 268 | 2587677921 | |||
| 269 | 2587748313 | |||
| 270 | 2588209810 | |||
| 271 | 2588215037 | |||
| 272 | 2588222456 | |||
| 273 | 2588234000 | |||
| 274 | 2588444720 | |||
| 275 | 2590604112 | |||
| 276 | 2729199709 | |||
| 277 | 2739588369 | |||
| 278 | 2739644227 | |||
| 279 | 2765573565 | |||
| 280 | 2772606139 | |||
| 281 | 2816873927 | |||
| 282 | 2819575434 | |||
| 283 | 2821137976 | |||
| 284 | 2842723498 | |||
| 285 | 2842910007 | |||
| 286 | 2849284841 | |||
| 287 | 2857631108 | |||
| 288 | 2871722873 | |||
| 289 | 2889295842 | |||
| 290 | 2902050961 | |||
| 291 | 2904468771 | |||
| 292 | 2914762741 | |||
| 293 | 2929243835 | |||
| 294 | 2946000340 | |||
| 295 | 2946022148 | |||
| 296 | 2954017225 | |||
| 297 | 2977233236 | |||
| 298 | 2977233287 | |||
| 299 | 2993372870 | |||
| 300 | 2993483543 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 8jda-assembly1.cif.gz_B | cyro-em structure of the na+/h+ antipoter sos1 from arabidopsis thaliana,class2 | 0.8794 | 2 | 394 |
| 8j2m-assembly1.cif.gz_B | the truncated rice na+/h+ antiporter sos1 (1-976) in a constitutively active state | 0.8508 | 5 | 393 |
| 8jda-assembly1.cif.gz_B | cyro-em structure of the na+/h+ antipoter sos1 from arabidopsis thaliana,class2 | 0.8173 | 2 | 394 |
| 8j2m-assembly1.cif.gz_B | the truncated rice na+/h+ antiporter sos1 (1-976) in a constitutively active state | 0.783 | 5 | 393 |
| 7dsw-assembly1.cif.gz_A | structure of a human nhe1-chp1 complex under ph 7.5 | 0.7747 | 9 | 391 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| af_Q8S397_18_450_1.20.1530.20 | Mainly Alpha;Up-down Bundle;Na+/H+ antiporter like fold; | 0.8773 | 2 | 393 | 1.20.1530.20 |
| af_A0A0G2K3D4_38_443_1.20.1530.20 | Mainly Alpha;Up-down Bundle;Na+/H+ antiporter like fold; | 0.8308 | 2 | 390 | 1.20.1530.20 |
| af_P76007_6_393_1.20.1530.20 | Mainly Alpha;Up-down Bundle;Na+/H+ antiporter like fold; | 0.8237 | 3 | 395 | 1.20.1530.20 |
| af_P32703_165_549_1.20.1530.20 | Mainly Alpha;Up-down Bundle;Na+/H+ antiporter like fold; | 0.815 | 158 | 504 | 1.20.1530.20 |
| af_P76007_6_393_1.20.1530.20 | Mainly Alpha;Up-down Bundle;Na+/H+ antiporter like fold; | 0.8057 | 3 | 395 | 1.20.1530.20 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A563U4R2-F1-model_v4 | Cation/H+ exchanger transmembrane domain-containing protein | 0.9476 | 5 | 345 |
GO:0005886
GO:0015385 GO:0015386 GO:0051453 GO:0098719 |
| AF-A0A4Q5YKE3-F1-model_v4 | Na+/H+ antiporter | 0.9419 | 3 | 351 |
GO:0005886
GO:0015385 GO:0015386 GO:0051453 GO:0098719 |
| AF-A0A6G7BRP3-F1-model_v4 | Na+/H+ antiporter | 0.9346 | 2 | 504 |
GO:0005886
GO:0015385 GO:0015386 GO:0051453 GO:0098719 |
| AF-A0A538A3T5-F1-model_v4 | Na+/H+ antiporter | 0.9321 | 56 | 379 |
GO:0005886
GO:0015385 GO:0015386 GO:0051453 GO:0098719 |
| AF-A0A2V8C1V1-F1-model_v4 | Na+/H+ antiporter | 0.9292 | 2 | 504 |
GO:0005886
GO:0015385 GO:0015386 GO:0051453 GO:0098719 |