F210058
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 150 | 120 | 300 | 245 |
Family's Representative Sequence
| Representative Sequence | 3300053153|Ga0500616_0000027|Ga0500616_0000027_271598_272446 |
| Length | 282 |
| Sequence | VASSDSDSGAPDAGARPVIGVTTYLEQAQTGIWDVRASFLPELYISAVTEAGGIALLLPPQPVDDAVARATLARLDGLIVSGGADVDPRRYGQEPHPLTGAPRVDRDDWEDALLRTAIETGLPFLGICRGVQMLNVALGGTLVQHLPDVVGHDGYQPGAAVFGRAPVDIDPGSVLGRTLGELSGPLEVELYHHQSLDAVADGLIVTARSAEGVIEAVELADAPFGVGVQWHPEQDAADRRLFAGLVDAARRHRDVQIRPGDDHRARARGRKASEPDQTRTET |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300053153 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere | Metagenome | Endosphere |
| 2 | 3300003792 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 | Metagenome | Endosphere |
| 3 | 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Metagenome | Rhizosphere |
| 4 | 3300005344 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG | Metagenome | Rhizosphere |
| 5 | 3300005471 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG | Metagenome | Rhizosphere |
| 6 | 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Metagenome | Rhizosphere |
| 7 | 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Metagenome | Rhizosphere |
| 8 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 9 | 3300005615 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG | Metagenome | Rhizosphere |
| 10 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 11 | 3300005719 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 | Metagenome | Rhizosphere |
| 12 | 3300005840 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 | Metagenome | Rhizosphere |
| 13 | 3300005844 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 | Metagenome | Rhizosphere |
| 14 | 3300005981 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 | Metagenome | Rhizosphere |
| 15 | 3300006028 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG | Metagenome | Rhizosphere |
| 16 | 3300006844 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 | Metagenome | Rhizosphere |
| 17 | 3300006880 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 | Metagenome | Rhizosphere |
| 18 | 3300006881 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 | Metagenome | Rhizosphere |
| 19 | 3300009094 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 20 | 3300009147 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 21 | 3300009148 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG | Metagenome | Rhizosphere |
| 22 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 23 | 3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Metagenome | Rhizosphere |
| 24 | 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Metagenome | Rhizosphere |
| 25 | 3300021384 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 | Metagenome | Unclassified |
| 26 | 3300022467 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 27 | 3300025303 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 28 | 3300025908 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 29 | 3300025921 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 30 | 3300025926 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 31 | 3300025944 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 32 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 33 | 3300025961 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 34 | 3300025981 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 35 | 3300026041 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 36 | 3300026067 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 37 | 3300026118 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 38 | 3300026121 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 39 | 3300026142 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 40 | 3300028381 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 41 | 3300031691 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA | Metagenome | Rhizosphere |
| 42 | 3300031731 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 | Metagenome | Rhizosphere |
| 43 | 3300031824 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 | Metagenome | Rhizosphere |
| 44 | 3300031852 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 | Metagenome | Rhizosphere |
| 45 | 3300031901 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 | Metagenome | Rhizosphere |
| 46 | 3300031995 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 | Metagenome | Rhizosphere |
| 47 | 3300032002 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 | Metagenome | Rhizosphere |
| 48 | 3300032005 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 | Metagenome | Rhizosphere |
| 49 | 3300032126 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 | Metagenome | Rhizosphere |
| 50 | 3300035118 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 | Metagenome | Rhizosphere |
| 51 | 3300035692 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 | Metagenome | Rhizosphere |
| 52 | 3300035725 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 | Metagenome | Rhizosphere |
| 53 | 3300036712 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA | Metagenome | Rhizosphere |
| 54 | 3300037588 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA | Metagenome | Rhizosphere |
| 55 | 3300039437 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 | Metagenome | Unclassified |
| 56 | 3300039453 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 | Metagenome | Rhizosphere |
| 57 | 3300041460 | Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaG | Metagenome | Rhizoplane |
| 58 | 3300042014 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 | Metagenome | Rhizosphere |
| 59 | 3300044658 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R | Metagenome | Rhizosphere |
| 60 | 3300044683 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R | Metagenome | Rhizosphere |
| 61 | 3300044684 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R | Metagenome | Rhizosphere |
| 62 | 3300044694 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R | Metagenome | Rhizosphere |
| 63 | 3300044706 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R | Metagenome | Rhizosphere |
| 64 | 3300044719 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R | Metagenome | Rhizosphere |
| 65 | 3300044842 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R | Metagenome | Rhizosphere |
| 66 | 3300044901 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R | Metagenome | Rhizosphere |
| 67 | 3300045836 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R | Metagenome | Rhizosphere |
| 68 | 3300045976 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R | Metagenome | Rhizosphere |
| 69 | 3300046460 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere | Metagenome | Rhizosphere |
| 70 | 3300046615 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere | Metagenome | Rhizosphere |
| 71 | 3300046679 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere | Metagenome | Rhizosphere |
| 72 | 3300047317 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere | Metagenome | Rhizosphere |
| 73 | 3300047444 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere | Metagenome | Rhizosphere |
| 74 | 3300047472 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere | Metagenome | Rhizosphere |
| 75 | 3300048088 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere | Metagenome | Rhizosphere |
| 76 | 3300048908 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 | Metagenome | Rhizoplane |
| 77 | 3300048909 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 | Metagenome | Rhizoplane |
| 78 | 3300048911 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled | Metagenome | Rhizoplane |
| 79 | 3300048912 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled | Metagenome | Rhizoplane |
| 80 | 3300048913 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 | Metagenome | Rhizoplane |
| 81 | 3300048914 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 | Metagenome | Rhizoplane |
| 82 | 3300048917 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 | Metagenome | Rhizoplane |
| 83 | 3300048918 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 | Metagenome | Rhizoplane |
| 84 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 85 | 3300049568 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 86 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 87 | 3300049572 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 88 | 3300049575 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 89 | 3300049577 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 90 | 3300049578 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 91 | 3300049582 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 92 | 3300049584 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 | Metagenome | Rhizosphere |
| 93 | 3300049587 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 | Metagenome | Rhizosphere |
| 94 | 3300049588 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 | Metagenome | Rhizosphere |
| 95 | 3300049591 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 | Metagenome | Rhizosphere |
| 96 | 3300049592 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 | Metagenome | Rhizosphere |
| 97 | 3300049593 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 | Metagenome | Rhizosphere |
| 98 | 3300049741 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 | Metagenome | Rhizosphere |
| 99 | 3300049743 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 | Metagenome | Rhizosphere |
| 100 | 3300049744 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 | Metagenome | Rhizosphere |
| 101 | 3300049822 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 102 | 3300049824 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 103 | 3300050507 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation | Metagenome | Rhizosphere |
| 104 | 3300050508 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation | Metagenome | Rhizosphere |
| 105 | 3300050511 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation | Metagenome | Rhizosphere |
| 106 | 3300054114 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 | Metagenome | Rhizosphere |
| 107 | 3300060353 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 | Metagenome | Rhizosphere |
| 108 | 3300061719 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 | Metagenome | Rhizosphere |
| 109 | 2643221549 | Agromyces sp. Root1464 | Isolate | Unclassified |
| 110 | 2643221572 | Leifsonia sp. Root60 | Isolate | Unclassified |
| 111 | 2643221601 | Kitasatospora sp. Root187 | Isolate | Unclassified |
| 112 | 2643221619 | Agromyces sp. Root81 | Isolate | Unclassified |
| 113 | 2643221631 | Kitasatospora sp. Root107 | Isolate | Unclassified |
| 114 | 2643221669 | Leifsonia sp. Root1293 | Isolate | Unclassified |
| 115 | 2643221687 | Mycobacterium sp. Root135 | Isolate | Unclassified |
| 116 | 2808606372 | Agromyces sp. 23-23 | Isolate | Unclassified |
| 117 | 2857729791 | Plantibacter sp. R-72288 | Isolate | Unclassified |
| 118 | 2895660088 | Leifsonia flava SYP-B2174 | Isolate | Rhizosphere |
| 119 | 2902837492 | Mycolicibacterium sp. P1-18 | Isolate | Unclassified |
| 120 | 2928121344 | Plantibacter flavus 1756 | Isolate | Rhizosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 91.33 |
| Metatranscriptomes | 0.67 |
| Isolates | 8 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 3.33 |
| Nodule | 0 |
| Rhizoplane | 6.67 |
| Rhizosphere | 81.33 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 1.33 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0500616_0000027 | 3300053153 | Bacteria | 441053 |
| 2 | Ga0055540_1001739 | 3300003792 | Bacteria | 12496 |
| 3 | Ga0055540_1011269 | 3300003792 | Bacteria | 2895 |
| 4 | Ga0070683_100556228 | 3300005329 | Bacteria | 1097 |
| 5 | Ga0070683_100628956 | 3300005329 | Bacteria | 1028 |
| 6 | Ga0070661_100194703 | 3300005344 | Bacteria | 1547 |
| 7 | Ga0070698_100388030 | 3300005471 | Unclassified | 1329 |
| 8 | Ga0070684_100194424 | 3300005535 | Bacteria | 1847 |
| 9 | Ga0068853_100052744 | 3300005539 | Bacteria | 3502 |
| 10 | Ga0068855_100000349 | 3300005563 | Bacteria | 57336 |
| 11 | Ga0068855_100036124 | 3300005563 | Bacteria | 5883 |
| 12 | Ga0070702_100092876 | 3300005615 | Bacteria | 1834 |
| 13 | Ga0068852_100050274 | 3300005616 | Bacteria | 3571 |
| 14 | Ga0068861_100270731 | 3300005719 | Bacteria | 1458 |
| 15 | Ga0068870_10083972 | 3300005840 | Bacteria | 1766 |
| 16 | Ga0068862_100167128 | 3300005844 | Bacteria | 1967 |
| 17 | Ga0081538_10100607 | 3300005981 | Bacteria | 1457 |
| 18 | Ga0070717_10478656 | 3300006028 | Bacteria | 1124 |
| 19 | Ga0075428_100185565 | 3300006844 | Bacteria | 2251 |
| 20 | Ga0075429_100477491 | 3300006880 | Unclassified | 1092 |
| 21 | Ga0068865_100482094 | 3300006881 | Bacteria | 1031 |
| 22 | Ga0111539_10079504 | 3300009094 | Bacteria | 3857 |
| 23 | Ga0114129_10524778 | 3300009147 | Bacteria | 1543 |
| 24 | Ga0105243_10080228 | 3300009148 | Bacteria | 2661 |
| 25 | Ga0105238_10676078 | 3300009551 | Bacteria | 1044 |
| 26 | Ga0105249_10242395 | 3300009553 | Bacteria | 1783 |
| 27 | Ga0157372_10098321 | 3300013307 | Bacteria | 3339 |
| 28 | Ga0213876_10000796 | 3300021384 | Bacteria | 21416 |
| 29 | Ga0224712_10196730 | 3300022467 | Bacteria | 915 |
| 30 | Ga0209051_1000374 | 3300025303 | Bacteria | 64311 |
| 31 | Ga0209051_1002709 | 3300025303 | Bacteria | 12325 |
| 32 | Ga0207643_10092028 | 3300025908 | Bacteria | 1769 |
| 33 | Ga0207652_10105965 | 3300025921 | Bacteria | 2488 |
| 34 | Ga0207659_10410262 | 3300025926 | Bacteria | 1134 |
| 35 | Ga0207661_10488756 | 3300025944 | Bacteria | 1124 |
| 36 | Ga0207667_10014582 | 3300025949 | Bacteria | 8952 |
| 37 | Ga0207712_10603137 | 3300025961 | Bacteria | 950 |
| 38 | Ga0207640_10067040 | 3300025981 | Archaea | 2400 |
| 39 | Ga0207639_10026963 | 3300026041 | Bacteria | 4180 |
| 40 | Ga0207678_10122018 | 3300026067 | Bacteria | 2224 |
| 41 | Ga0207675_100185574 | 3300026118 | Bacteria | 1993 |
| 42 | Ga0207683_10314001 | 3300026121 | Bacteria | 1435 |
| 43 | Ga0207698_10003574 | 3300026142 | Bacteria | 9381 |
| 44 | Ga0268264_10001045 | 3300028381 | Bacteria | 27605 |
| 45 | Ga0316579_10003115 | 3300031691 | Bacteria | 6401 |
| 46 | Ga0307405_10072702 | 3300031731 | Bacteria | 2218 |
| 47 | Ga0307405_10262517 | 3300031731 | Bacteria | 1291 |
| 48 | Ga0307413_10087799 | 3300031824 | Bacteria | 2016 |
| 49 | Ga0307413_10162672 | 3300031824 | Bacteria | 1570 |
| 50 | Ga0307410_10097494 | 3300031852 | Bacteria | 2101 |
| 51 | Ga0307406_10164656 | 3300031901 | Bacteria | 1598 |
| 52 | Ga0307409_100107025 | 3300031995 | Bacteria | 2335 |
| 53 | Ga0307409_100697018 | 3300031995 | Bacteria | 1014 |
| 54 | Ga0307416_100854727 | 3300032002 | Bacteria | 1008 |
| 55 | Ga0307411_10161644 | 3300032005 | Bacteria | 1678 |
| 56 | Ga0307411_10174109 | 3300032005 | Bacteria | 1626 |
| 57 | Ga0307415_100124069 | 3300032126 | Bacteria | 1943 |
| 58 | Ga0307415_100265100 | 3300032126 | Bacteria | 1404 |
| 59 | Ga0307415_100304500 | 3300032126 | Bacteria | 1322 |
| 60 | Ga0373954_0096726 | 3300035118 | Bacteria | 1422 |
| 61 | Ga0373935_0008947 | 3300035692 | Bacteria | 5994 |
| 62 | Ga0373947_0000001 | 3300035725 | Bacteria | 510932 |
| 63 | Ga0316584_0006793 | 3300036712 | Bacteria | 7766 |
| 64 | Ga0316581_0052047 | 3300037588 | Bacteria | 1255 |
| 65 | Ga0436365_1609616 | 3300039437 | Bacteria | 35047 |
| 66 | Ga0436362_0428314 | 3300039453 | Bacteria | 1127 |
| 67 | Ga0451802_0822570 | 3300041460 | Bacteria | 1875 |
| 68 | Ga0439457_016429 | 3300042014 | Bacteria | 1650 |
| 69 | Ga0466972_0043975 | 3300044658 | Bacteria | 2168 |
| 70 | Ga0466965_0000761 | 3300044683 | Bacteria | 12126 |
| 71 | Ga0466965_0137869 | 3300044683 | Bacteria | 1268 |
| 72 | Ga0466966_0039814 | 3300044684 | Bacteria | 3026 |
| 73 | Ga0466963_0010023 | 3300044694 | Bacteria | 5728 |
| 74 | Ga0466963_0049840 | 3300044694 | Bacteria | 2770 |
| 75 | Ga0466963_0071072 | 3300044694 | Bacteria | 2342 |
| 76 | Ga0466963_0074121 | 3300044694 | Bacteria | 2295 |
| 77 | Ga0466963_0121264 | 3300044694 | Bacteria | 1800 |
| 78 | Ga0466963_0156614 | 3300044694 | Bacteria | 1584 |
| 79 | Ga0466964_0027284 | 3300044706 | Bacteria | 2242 |
| 80 | Ga0466971_0065209 | 3300044719 | Bacteria | 1649 |
| 81 | Ga0466957_0058400 | 3300044842 | Bacteria | 2364 |
| 82 | Ga0466957_0155811 | 3300044842 | Bacteria | 1480 |
| 83 | Ga0466957_0297463 | 3300044842 | Bacteria | 1084 |
| 84 | Ga0466960_0000590 | 3300044901 | Bacteria | 12546 |
| 85 | Ga0466958_0133698 | 3300045836 | Bacteria | 1559 |
| 86 | Ga0466958_0354367 | 3300045836 | Bacteria | 945 |
| 87 | Ga0466967_0130944 | 3300045976 | Bacteria | 2328 |
| 88 | Ga0466967_0513772 | 3300045976 | Bacteria | 1176 |
| 89 | Ga0466967_0804481 | 3300045976 | Bacteria | 933 |
| 90 | Ga0495638_0168026 | 3300046460 | Bacteria | 1260 |
| 91 | Ga0495656_0042572 | 3300046615 | Bacteria | 1902 |
| 92 | Ga0495623_0082823 | 3300046679 | Bacteria | 1982 |
| 93 | Ga0495604_0003935 | 3300047317 | Bacteria | 11832 |
| 94 | Ga0495604_0039862 | 3300047317 | Bacteria | 3690 |
| 95 | Ga0495675_0009988 | 3300047444 | Bacteria | 5920 |
| 96 | Ga0495675_0055602 | 3300047444 | Bacteria | 2510 |
| 97 | Ga0495675_0348612 | 3300047444 | Bacteria | 871 |
| 98 | Ga0495686_0025418 | 3300047472 | Bacteria | 3882 |
| 99 | Ga0495602_0276897 | 3300048088 | Bacteria | 1238 |
| 100 | Ga0496105_0024850 | 3300048908 | Bacteria | 4869 |
| 101 | Ga0496106_0407673 | 3300048909 | Bacteria | 1092 |
| 102 | Ga0496108_0014093 | 3300048911 | Bacteria | 6521 |
| 103 | Ga0496109_0006964 | 3300048912 | Bacteria | 9540 |
| 104 | Ga0496110_0008261 | 3300048913 | Bacteria | 8370 |
| 105 | Ga0496111_0030039 | 3300048914 | Bacteria | 3863 |
| 106 | Ga0496114_0246349 | 3300048917 | Bacteria | 1572 |
| 107 | Ga0496114_0259254 | 3300048917 | Bacteria | 1530 |
| 108 | Ga0496115_0013988 | 3300048918 | Bacteria | 6074 |
| 109 | Ga0496126_0172592 | 3300048929 | Bacteria | 1841 |
| 110 | Ga0501031_0023798 | 3300049568 | Bacteria | 3993 |
| 111 | Ga0501034_0002103 | 3300049571 | Bacteria | 24858 |
| 112 | Ga0501036_0014381 | 3300049572 | Bacteria | 6590 |
| 113 | Ga0501039_0380071 | 3300049575 | Bacteria | 1109 |
| 114 | Ga0501041_0011178 | 3300049577 | Bacteria | 5302 |
| 115 | Ga0501042_0192834 | 3300049578 | Bacteria | 1469 |
| 116 | Ga0501048_0030038 | 3300049582 | Bacteria | 3936 |
| 117 | Ga0501068_0172420 | 3300049584 | Bacteria | 1366 |
| 118 | Ga0501071_0022577 | 3300049587 | Bacteria | 4387 |
| 119 | Ga0501072_0061720 | 3300049588 | Bacteria | 2956 |
| 120 | Ga0501075_0025114 | 3300049591 | Bacteria | 4376 |
| 121 | Ga0501076_0026043 | 3300049592 | Bacteria | 4527 |
| 122 | Ga0501077_0017122 | 3300049593 | Bacteria | 4571 |
| 123 | Ga0501079_0012384 | 3300049741 | Bacteria | 6508 |
| 124 | Ga0501081_0013654 | 3300049743 | Bacteria | 5340 |
| 125 | Ga0501083_0141960 | 3300049744 | Bacteria | 1573 |
| 126 | Ga0501035_0145746 | 3300049822 | Bacteria | 2057 |
| 127 | Ga0501045_0021803 | 3300049824 | Bacteria | 4584 |
| 128 | nmdc:mga05p37_458272_c1 | 3300050507 | Bacteria | 1474 |
| 129 | nmdc:mga05p37_948302_c1 | 3300050507 | Bacteria | 921 |
| 130 | nmdc:mga09592_375143_c1 | 3300050508 | Bacteria | 1230 |
| 131 | nmdc:mga08y16_115441_c1 | 3300050511 | Bacteria | 2795 |
| 132 | nmdc:mga08y16_452361_c1 | 3300050511 | Bacteria | 1309 |
| 133 | Ga0501084_0018912 | 3300054114 | Bacteria | 5735 |
| 134 | Ga0501082_0031962 | 3300060353 | Bacteria | 4540 |
| 135 | Ga0501082_0032728 | 3300060353 | Bacteria | 4485 |
| 136 | Ga0466962_0007098 | 3300061719 | Bacteria | 5370 |
| 137 | Ga0466962_0066050 | 3300061719 | Bacteria | 1727 |
| 138 | Ga0466962_0117612 | 3300061719 | Bacteria | 1281 |
| 139 | 2643769426 | 2643221549 | Bacteria | 4042819 |
| 140 | 2643874826 | 2643221572 | Bacteria | 3614809 |
| 141 | 2644019242 | 2643221601 | Bacteria | 7493239 |
| 142 | 2644114040 | 2643221619 | Bacteria | 4158469 |
| 143 | 2644174150 | 2643221631 | Bacteria | 8168043 |
| 144 | 2644381882 | 2643221669 | Bacteria | 3611286 |
| 145 | 2644486388 | 2643221687 | Bacteria | 6500351 |
| 146 | 2808902686 | 2808606372 | Bacteria | 4649509 |
| 147 | 2857733098 | 2857729791 | Bacteria | 4040535 |
| 148 | 2895660914 | 2895660088 | Bacteria | 3782833 |
| 149 | 2902840195 | 2902837492 | Bacteria | 6697721 |
| 150 | 2928121803 | 2928121344 | Bacteria | 3972376 |
| 151 | Ga0500616_0000027 | |||
| 152 | Ga0055540_1001739 | |||
| 153 | Ga0055540_1011269 | |||
| 154 | Ga0070683_100556228 | |||
| 155 | Ga0070683_100628956 | |||
| 156 | Ga0070661_100194703 | |||
| 157 | Ga0070698_100388030 | |||
| 158 | Ga0070684_100194424 | |||
| 159 | Ga0068853_100052744 | |||
| 160 | Ga0068855_100000349 | |||
| 161 | Ga0068855_100036124 | |||
| 162 | Ga0070702_100092876 | |||
| 163 | Ga0068852_100050274 | |||
| 164 | Ga0068861_100270731 | |||
| 165 | Ga0068870_10083972 | |||
| 166 | Ga0068862_100167128 | |||
| 167 | Ga0081538_10100607 | |||
| 168 | Ga0070717_10478656 | |||
| 169 | Ga0075428_100185565 | |||
| 170 | Ga0075429_100477491 | |||
| 171 | Ga0068865_100482094 | |||
| 172 | Ga0111539_10079504 | |||
| 173 | Ga0114129_10524778 | |||
| 174 | Ga0105243_10080228 | |||
| 175 | Ga0105238_10676078 | |||
| 176 | Ga0105249_10242395 | |||
| 177 | Ga0157372_10098321 | |||
| 178 | Ga0213876_10000796 | |||
| 179 | Ga0224712_10196730 | |||
| 180 | Ga0209051_1000374 | |||
| 181 | Ga0209051_1002709 | |||
| 182 | Ga0207643_10092028 | |||
| 183 | Ga0207652_10105965 | |||
| 184 | Ga0207659_10410262 | |||
| 185 | Ga0207661_10488756 | |||
| 186 | Ga0207667_10014582 | |||
| 187 | Ga0207712_10603137 | |||
| 188 | Ga0207640_10067040 | |||
| 189 | Ga0207639_10026963 | |||
| 190 | Ga0207678_10122018 | |||
| 191 | Ga0207675_100185574 | |||
| 192 | Ga0207683_10314001 | |||
| 193 | Ga0207698_10003574 | |||
| 194 | Ga0268264_10001045 | |||
| 195 | Ga0316579_10003115 | |||
| 196 | Ga0307405_10072702 | |||
| 197 | Ga0307405_10262517 | |||
| 198 | Ga0307413_10087799 | |||
| 199 | Ga0307413_10162672 | |||
| 200 | Ga0307410_10097494 | |||
| 201 | Ga0307406_10164656 | |||
| 202 | Ga0307409_100107025 | |||
| 203 | Ga0307409_100697018 | |||
| 204 | Ga0307416_100854727 | |||
| 205 | Ga0307411_10161644 | |||
| 206 | Ga0307411_10174109 | |||
| 207 | Ga0307415_100124069 | |||
| 208 | Ga0307415_100265100 | |||
| 209 | Ga0307415_100304500 | |||
| 210 | Ga0373954_0096726 | |||
| 211 | Ga0373935_0008947 | |||
| 212 | Ga0373947_0000001 | |||
| 213 | Ga0316584_0006793 | |||
| 214 | Ga0316581_0052047 | |||
| 215 | Ga0436365_1609616 | |||
| 216 | Ga0436362_0428314 | |||
| 217 | Ga0451802_0822570 | |||
| 218 | Ga0439457_016429 | |||
| 219 | Ga0466972_0043975 | |||
| 220 | Ga0466965_0000761 | |||
| 221 | Ga0466965_0137869 | |||
| 222 | Ga0466966_0039814 | |||
| 223 | Ga0466963_0010023 | |||
| 224 | Ga0466963_0049840 | |||
| 225 | Ga0466963_0071072 | |||
| 226 | Ga0466963_0074121 | |||
| 227 | Ga0466963_0121264 | |||
| 228 | Ga0466963_0156614 | |||
| 229 | Ga0466964_0027284 | |||
| 230 | Ga0466971_0065209 | |||
| 231 | Ga0466957_0058400 | |||
| 232 | Ga0466957_0155811 | |||
| 233 | Ga0466957_0297463 | |||
| 234 | Ga0466960_0000590 | |||
| 235 | Ga0466958_0133698 | |||
| 236 | Ga0466958_0354367 | |||
| 237 | Ga0466967_0130944 | |||
| 238 | Ga0466967_0513772 | |||
| 239 | Ga0466967_0804481 | |||
| 240 | Ga0495638_0168026 | |||
| 241 | Ga0495656_0042572 | |||
| 242 | Ga0495623_0082823 | |||
| 243 | Ga0495604_0003935 | |||
| 244 | Ga0495604_0039862 | |||
| 245 | Ga0495675_0009988 | |||
| 246 | Ga0495675_0055602 | |||
| 247 | Ga0495675_0348612 | |||
| 248 | Ga0495686_0025418 | |||
| 249 | Ga0495602_0276897 | |||
| 250 | Ga0496105_0024850 | |||
| 251 | Ga0496106_0407673 | |||
| 252 | Ga0496108_0014093 | |||
| 253 | Ga0496109_0006964 | |||
| 254 | Ga0496110_0008261 | |||
| 255 | Ga0496111_0030039 | |||
| 256 | Ga0496114_0246349 | |||
| 257 | Ga0496114_0259254 | |||
| 258 | Ga0496115_0013988 | |||
| 259 | Ga0496126_0172592 | |||
| 260 | Ga0501031_0023798 | |||
| 261 | Ga0501034_0002103 | |||
| 262 | Ga0501036_0014381 | |||
| 263 | Ga0501039_0380071 | |||
| 264 | Ga0501041_0011178 | |||
| 265 | Ga0501042_0192834 | |||
| 266 | Ga0501048_0030038 | |||
| 267 | Ga0501068_0172420 | |||
| 268 | Ga0501071_0022577 | |||
| 269 | Ga0501072_0061720 | |||
| 270 | Ga0501075_0025114 | |||
| 271 | Ga0501076_0026043 | |||
| 272 | Ga0501077_0017122 | |||
| 273 | Ga0501079_0012384 | |||
| 274 | Ga0501081_0013654 | |||
| 275 | Ga0501083_0141960 | |||
| 276 | Ga0501035_0145746 | |||
| 277 | Ga0501045_0021803 | |||
| 278 | nmdc:mga05p37_458272_c1 | |||
| 279 | nmdc:mga05p37_948302_c1 | |||
| 280 | nmdc:mga09592_375143_c1 | |||
| 281 | nmdc:mga08y16_115441_c1 | |||
| 282 | nmdc:mga08y16_452361_c1 | |||
| 283 | Ga0501084_0018912 | |||
| 284 | Ga0501082_0031962 | |||
| 285 | Ga0501082_0032728 | |||
| 286 | Ga0466962_0007098 | |||
| 287 | Ga0466962_0066050 | |||
| 288 | Ga0466962_0117612 | |||
| 289 | 2643769426 | |||
| 290 | 2643874826 | |||
| 291 | 2644019242 | |||
| 292 | 2644114040 | |||
| 293 | 2644174150 | |||
| 294 | 2644381882 | |||
| 295 | 2644486388 | |||
| 296 | 2808902686 | |||
| 297 | 2857733098 | |||
| 298 | 2895660914 | |||
| 299 | 2902840195 | |||
| 300 | 2928121803 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 6vtv-assembly1.cif.gz_A | crystal structure of puud gamma-glutamyl-gamma-aminobutyrate hydrolase from e. coli | 0.9219 | 16 | 254 |
| 3fij-assembly1.cif.gz_F | crystal structure of a uncharacterized protein lin1909 | 0.8968 | 15 | 247 |
| 3fij-assembly1.cif.gz_G | crystal structure of a uncharacterized protein lin1909 | 0.8936 | 15 | 245 |
| 7d53-assembly1.cif.gz_B | spua mutant - h221n with glu | 0.8924 | 16 | 250 |
| 7d50-assembly1.cif.gz_A | error: ('connection aborted.', connectionreseterror(104, 'connection reset by peer')) | 0.891 | 16 | 251 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| af_O33341_63_305_3.40.50.880 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Class I glutamine amidotransferase (GATase) domain | 0.9951 | 15 | 254 | 3.40.50.880 |
| af_O33341_63_305_3.40.50.880 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Class I glutamine amidotransferase (GATase) domain | 0.9788 | 15 | 254 | 3.40.50.880 |
| af_P76038_5_253_3.40.50.880 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Class I glutamine amidotransferase (GATase) domain | 0.9233 | 14 | 253 | 3.40.50.880 |
| af_Q9HDV0_3_233_3.40.50.880 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Class I glutamine amidotransferase (GATase) domain | 0.9001 | 16 | 255 | 3.40.50.880 |
| af_Q9HDV0_3_233_3.40.50.880 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Class I glutamine amidotransferase (GATase) domain | 0.8887 | 16 | 255 | 3.40.50.880 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A5A4WE05-F1-model_v4 | deleted | 0.9934 | 55 | 252 |
|
| AF-A0A7I7X1L1-F1-model_v4 | Gamma-glutamyl-gamma-aminobutyrate hydrolase | 0.9915 | 14 | 254 |
GO:0005829
GO:0006541 GO:0006598 GO:0033969 |
| AF-A0A1A3NX40-F1-model_v4 | Gamma-glutamyl-gamma-aminobutyrate hydrolase | 0.9903 | 21 | 250 |
GO:0005829
GO:0006541 GO:0006598 GO:0033969 |
| AF-A0A5B1ATQ2-F1-model_v4 | Gamma-glutamyl-gamma-aminobutyrate hydrolase family protein | 0.9903 | 144 | 250 |
GO:0016787
|
| AF-A0A399JG62-F1-model_v4 | Gamma-glutamyl-gamma-aminobutyrate hydrolase family protein | 0.9861 | 18 | 254 |
GO:0005829
GO:0006541 GO:0006598 GO:0033969 |