F209934

General Info

Members Datasets Scaffolds Average Seq Length
150 117 150 256

Family's Representative Sequence

Representative Sequence 3300049591|Ga0501075_0190343|Ga0501075_0190343_557_1414
Length 285
Sequence MSLSPVTAAPTPRPAERRRTRARHSRLNTPVVILAGGRGTRLAEETTTRPKPMVEIGGLPILWHIMRLYAHHGFKDFLIACGYKGEMIKEYFHDFFMRHNDFLMDLRSGSRTILSKNGFDWRVGVLDTGADTMTGGRILRLRRWISDSRFMVTYGDGLGNVDIRRLLEFHCAHGKLATVTAVRPPARFGELVLNGSDQVVEFSEKPQTGAGWINGGFFVFEPRVFDYIDNDDTVLEGAPLERLAAAGQLVAFRHDGFWQPMDTLREKQLLESLWTGGNAPWKVWP

Samples

Sample ID Description Type Environment
1 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
2 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
3 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
4 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
5 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
6 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
7 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
8 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
9 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
10 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
11 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
12 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
13 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
14 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
15 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
16 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
17 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
18 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
19 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
20 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
21 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
22 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
23 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
24 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
25 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
26 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
27 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
28 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
29 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
30 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
31 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
32 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
33 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
34 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
35 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
36 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
37 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
38 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
39 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
40 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
41 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
42 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
43 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
44 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
45 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
62 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
65 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
66 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
67 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
68 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
69 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
70 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
71 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
72 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
73 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
74 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
75 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
76 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
77 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
78 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
79 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
80 3300042134 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_070716_126 Metagenome Rhizosphere
81 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
82 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
83 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
84 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
85 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
86 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
87 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
88 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
89 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
90 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
91 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
92 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
93 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
94 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
95 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
97 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
98 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
99 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
100 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
101 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
102 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
103 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
104 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
105 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
106 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
107 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
108 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
109 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
110 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
111 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
112 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
113 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
114 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
115 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
116 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
117 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.33
Metatranscriptomes 0.67
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2
Nodule 0
Rhizoplane 1.33
Rhizosphere 95.33
Stem 0
Stem Tuber 0
Unclassified 1.33

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0065712_10074917 3300005290 Bacteria 3980
2 Ga0070676_10035977 3300005328 Bacteria 2850
3 Ga0070690_100217863 3300005330 Bacteria 1336
4 Ga0070670_100005243 3300005331 Bacteria 10912
5 Ga0068869_100185341 3300005334 Bacteria 1633
6 Ga0070666_10049403 3300005335 Bacteria 2827
7 Ga0070669_100050877 3300005353 Bacteria 3027
8 Ga0070675_100077753 3300005354 Bacteria 2762
9 Ga0070671_100078054 3300005355 Bacteria 2768
10 Ga0070673_100145284 3300005364 Bacteria 2005
11 Ga0070705_100003457 3300005440 Bacteria 7741
12 Ga0070705_100071459 3300005440 Bacteria 2099
13 Ga0070663_100001046 3300005455 Bacteria 15132
14 Ga0070678_100666038 3300005456 Bacteria 935
15 Ga0070707_100185396 3300005468 Bacteria 2029
16 Ga0070698_100000018 3300005471 Bacteria 107758
17 Ga0070698_100072862 3300005471 Bacteria 3442
18 Ga0070698_100375490 3300005471 Bacteria 1354
19 Ga0070699_100157984 3300005518 Bacteria 2006
20 Ga0070665_100029080 3300005548 Bacteria 5563
21 Ga0070704_100000311 3300005549 Bacteria 21737
22 Ga0070704_100083496 3300005549 Bacteria 2358
23 Ga0070704_100086222 3300005549 Unclassified 2326
24 Ga0068854_100098381 3300005578 Bacteria 2189
25 Ga0068854_100457432 3300005578 Bacteria 1067
26 Ga0068859_100185929 3300005617 Bacteria 2161
27 Ga0068859_100443770 3300005617 Bacteria 1394
28 Ga0068864_100134011 3300005618 Bacteria 2229
29 Ga0068864_100234517 3300005618 Bacteria 1698
30 Ga0068863_100153734 3300005841 Bacteria 2202
31 Ga0068858_100134046 3300005842 Bacteria 2323
32 Ga0068860_100730981 3300005843 Bacteria 1001
33 Ga0070717_10005066 3300006028 Bacteria 9607
34 Ga0075363_100013357 3300006048 Bacteria 3977
35 Ga0068871_100215697 3300006358 Bacteria 1661
36 Ga0075428_100026753 3300006844 Bacteria 6388
37 Ga0075433_10021840 3300006852 Bacteria 5369
38 Ga0075434_100028426 3300006871 Bacteria 5494
39 Ga0075434_100706948 3300006871 Bacteria 1025
40 Ga0068865_100798594 3300006881 Bacteria 814
41 Ga0075436_100114507 3300006914 Unclassified 1883
42 Ga0097620_100185925 3300006931 Bacteria 2161
43 Ga0097620_100443731 3300006931 Bacteria 1394
44 Ga0075435_100005849 3300007076 Bacteria 8652
45 Ga0111539_10213906 3300009094 Bacteria 2246
46 Ga0114129_10016738 3300009147 Bacteria 10443
47 Ga0114129_10032045 3300009147 Bacteria 7430
48 Ga0114129_10149067 3300009147 Bacteria 3202
49 Ga0105241_10163955 3300009174 Bacteria 1830
50 Ga0105242_10431257 3300009176 Bacteria 1238
51 Ga0105248_10067955 3300009177 Bacteria 4001
52 Ga0105248_10085804 3300009177 Bacteria 3542
53 Ga0105248_10086824 3300009177 Bacteria 3520
54 Ga0105248_10142348 3300009177 Bacteria 2705
55 Ga0105239_10527854 3300010375 Bacteria 1343
56 Ga0163162_10478375 3300013306 Bacteria 1377
57 Ga0157375_10190351 3300013308 Bacteria 2206
58 Ga0157375_11103794 3300013308 Bacteria 929
59 Ga0157376_10359481 3300014969 Bacteria 1396
60 Ga0206356_10625053 3300020070 Unclassified 2360
61 Ga0207657_10153256 3300025919 Bacteria 1876
62 Ga0207652_10128116 3300025921 Bacteria 2262
63 Ga0207646_10008380 3300025922 Bacteria 10366
64 Ga0207646_10167549 3300025922 Bacteria 1983
65 Ga0207681_10016962 3300025923 Bacteria 4568
66 Ga0207650_10012697 3300025925 Bacteria 5815
67 Ga0207700_10696048 3300025928 Bacteria 907
68 Ga0207686_10215454 3300025934 Bacteria 1383
69 Ga0207691_10376260 3300025940 Bacteria 1213
70 Ga0207711_10035404 3300025941 Bacteria 4231
71 Ga0207711_10241276 3300025941 Bacteria 1657
72 Ga0207661_10734696 3300025944 Bacteria 908
73 Ga0207640_10006622 3300025981 Bacteria 6366
74 Ga0207703_10208528 3300026035 Bacteria 1741
75 Ga0207678_10002757 3300026067 Bacteria 15912
76 Ga0207676_10036100 3300026095 Bacteria 3758
77 Ga0207676_10210681 3300026095 Bacteria 1724
78 Ga0207676_10214562 3300026095 Bacteria 1710
79 Ga0207675_100108509 3300026118 Bacteria 2618
80 Ga0207683_10179676 3300026121 Unclassified 1918
81 Ga0207683_10320344 3300026121 Bacteria 1420
82 Ga0207428_10433065 3300027907 Bacteria 960
83 Ga0268266_10018202 3300028379 Bacteria 5990
84 Ga0268264_10511056 3300028381 Bacteria 1173
85 Ga0307511_10000007 3300030521 Bacteria 167546
86 Ga0307408_100045764 3300031548 Bacteria 3127
87 Ga0307408_100167140 3300031548 Bacteria 1753
88 Ga0307405_10156272 3300031731 Bacteria 1610
89 Ga0307413_10034732 3300031824 Bacteria 2885
90 Ga0307410_10300012 3300031852 Bacteria 1267
91 Ga0307406_10019475 3300031901 Bacteria 3983
92 Ga0307406_10188941 3300031901 Bacteria 1506
93 Ga0307406_10243224 3300031901 Bacteria 1351
94 Ga0307412_10028732 3300031911 Bacteria 3483
95 Ga0307412_10029281 3300031911 Bacteria 3455
96 Ga0307416_100268084 3300032002 Bacteria 1674
97 Ga0307411_10152465 3300032005 Bacteria 1719
98 Ga0307415_100008050 3300032126 Bacteria 5817
99 Ga0307415_100054518 3300032126 Bacteria 2730
100 Ga0373924_0087576 3300035410 Bacteria 1330
101 Ga0373947_0491413 3300035725 Bacteria 833
102 Ga0395899_0336433 3300037312 Bacteria 1013
103 Ga0395905_0027269 3300037471 Bacteria 5387
104 Ga0395905_0324039 3300037471 Bacteria 1431
105 Ga0395901_0018161 3300038443 Bacteria 7179
106 Ga0436362_0044895 3300039453 Unclassified 2405
107 Ga0450898_006837 3300042134 Bacteria 1763
108 Ga0439435_0071622 3300042436 Bacteria 1027
109 Ga0451577_0152470 3300042876 Bacteria 2080
110 Ga0495582_0148792 3300046473 Bacteria 1329
111 Ga0495664_0149257 3300046477 Bacteria 1418
112 Ga0495658_0120109 3300046683 Bacteria 1589
113 Ga0496102_0291247 3300048905 Bacteria 1539
114 Ga0496103_0201103 3300048906 Bacteria 1281
115 Ga0496125_0001157 3300048928 Bacteria 39930
116 Ga0501033_0083947 3300049570 Bacteria 2334
117 Ga0501036_0025643 3300049572 Bacteria 4975
118 Ga0501038_0005038 3300049574 Bacteria 12273
119 Ga0501039_0022235 3300049575 Bacteria 4868
120 Ga0501040_0018272 3300049576 Bacteria 4654
121 Ga0501040_0032408 3300049576 Bacteria 3536
122 Ga0501042_0004049 3300049578 Bacteria 9293
123 Ga0501043_0127424 3300049579 Bacteria 1996
124 Ga0501048_0061013 3300049582 Bacteria 2671
125 Ga0501068_0084783 3300049584 Bacteria 1949
126 Ga0501071_0115681 3300049587 Bacteria 1984
127 Ga0501072_0004101 3300049588 Bacteria 11029
128 Ga0501073_0087997 3300049589 Bacteria 2160
129 Ga0501075_0190343 3300049591 Bacteria 1565
130 Ga0501076_0000078 3300049592 Bacteria 49990
131 Ga0501076_0217417 3300049592 Bacteria 1562
132 Ga0501077_0104417 3300049593 Bacteria 1795
133 Ga0501079_0062274 3300049741 Bacteria 2878
134 Ga0501080_0011979 3300049742 Bacteria 7944
135 nmdc:mga03n38_4287_c1 3300050490 Bacteria 4700
136 nmdc:mga05p37_185031_c1 3300050507 Unclassified 2533
137 nmdc:mga05p37_25209_c1 3300050507 Bacteria 7231
138 nmdc:mga09592_218743_c1 3300050508 Bacteria 1650
139 nmdc:mga08y16_188469_c1 3300050511 Bacteria 2140
140 nmdc:mga0n895_169669_c1 3300050512 Bacteria 2214
141 nmdc:mga0n895_201720_c1 3300050512 Unclassified 2020
142 nmdc:mga0rr50_20528_c1 3300050513 Bacteria 4491
143 nmdc:mga08x19_56593_c1 3300050514 Unclassified 2531
144 nmdc:mga0a205_14282_c1 3300050515 Bacteria 7406
145 Ga0500556_0043694 3300053104 Bacteria 1592
146 Ga0501084_0002300 3300054114 Bacteria 15352
147 Ga0501082_0016462 3300060353 Bacteria 6363
148 Ga0501082_0153488 3300060353 Bacteria 2001
149 Ga0501082_0421134 3300060353 Bacteria 1166
150 Ga0530510_0000006 3300061734 Bacteria 180585

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300035725 Ga0373947_0491413 Ga0373947_0491413_126_818 218
2 3300048906 Ga0496103_0201103 Ga0496103_0201103_592_1251 219
3 3300025934 Ga0207686_10215454 Ga0207686_102154541 226
4 3300038443 Ga0395901_0018161 Ga0395901_0018161_2131_2826 230
5 3300009174 Ga0105241_10163955 Ga0105241_101639551 231
6 3300009176 Ga0105242_10431257 Ga0105242_104312571 231
7 3300025941 Ga0207711_10035404 Ga0207711_100354043 231
8 3300009094 Ga0111539_10213906 Ga0111539_102139062 233
9 3300027907 Ga0207428_10433065 Ga0207428_104330652 233
10 3300050511 nmdc:mga08y16_188469_c1 nmdc:mga08y16_188469_c1_580_1311 233
11 3300006871 Ga0075434_100706948 Ga0075434_1007069482 234
12 3300025928 Ga0207700_10696048 Ga0207700_106960481 237
13 3300049582 Ga0501048_0061013 Ga0501048_0061013_1923_2639 238
14 3300048928 Ga0496125_0001157 Ga0496125_0001157_31324_32097 249
15 3300005518 Ga0070699_100157984 Ga0070699_1001579842 254
16 3300005549 Ga0070704_100083496 Ga0070704_1000834962 254
17 3300025919 Ga0207657_10153256 Ga0207657_101532562 254
18 3300025921 Ga0207652_10128116 Ga0207652_101281162 254
19 3300037312 Ga0395899_0336433 Ga0395899_0336433_51_818 254
20 3300042134 Ga0450898_006837 Ga0450898_006837_541_1308 254
21 3300005330 Ga0070690_100217863 Ga0070690_1002178632 255
22 3300005471 Ga0070698_100000018 Ga0070698_10000001851 255
23 3300005617 Ga0068859_100443770 Ga0068859_1004437702 255
24 3300005841 Ga0068863_100153734 Ga0068863_1001537342 255
25 3300006844 Ga0075428_100026753 Ga0075428_1000267532 255
26 3300006931 Ga0097620_100443731 Ga0097620_1004437312 255
27 3300009147 Ga0114129_10016738 Ga0114129_100167385 255
28 3300009147 Ga0114129_10149067 Ga0114129_101490672 255
29 3300009177 Ga0105248_10085804 Ga0105248_100858042 255
30 3300009177 Ga0105248_10086824 Ga0105248_100868243 255
31 3300026121 Ga0207683_10179676 Ga0207683_101796762 255
32 3300030521 Ga0307511_10000007 Ga0307511_1000000737 255
33 3300042876 Ga0451577_0152470 Ga0451577_0152470_1200_1967 255
34 3300046473 Ga0495582_0148792 Ga0495582_0148792_245_1048 255
35 3300046477 Ga0495664_0149257 Ga0495664_0149257_263_1123 255
36 3300046683 Ga0495658_0120109 Ga0495658_0120109_318_1121 255
37 3300049592 Ga0501076_0217417 Ga0501076_0217417_751_1518 255
38 3300050507 nmdc:mga05p37_25209_c1 nmdc:mga05p37_25209_c1_5019_5786 255
39 3300050508 nmdc:mga09592_218743_c1 nmdc:mga09592_218743_c1_714_1481 255
40 3300050512 nmdc:mga0n895_169669_c1 nmdc:mga0n895_169669_c1_478_1353 255
41 3300060353 Ga0501082_0153488 Ga0501082_0153488_95_892 255
42 3300060353 Ga0501082_0421134 Ga0501082_0421134_236_1003 255
43 3300005328 Ga0070676_10035977 Ga0070676_100359772 256
44 3300005334 Ga0068869_100185341 Ga0068869_1001853412 256
45 3300005335 Ga0070666_10049403 Ga0070666_100494033 256
46 3300005355 Ga0070671_100078054 Ga0070671_1000780543 256
47 3300005440 Ga0070705_100003457 Ga0070705_1000034573 256
48 3300005440 Ga0070705_100071459 Ga0070705_1000714593 256
49 3300005455 Ga0070663_100001046 Ga0070663_10000104614 256
50 3300005456 Ga0070678_100666038 Ga0070678_1006660381 256
51 3300005468 Ga0070707_100185396 Ga0070707_1001853962 256
52 3300005471 Ga0070698_100072862 Ga0070698_1000728621 256
53 3300005471 Ga0070698_100375490 Ga0070698_1003754902 256
54 3300005548 Ga0070665_100029080 Ga0070665_1000290803 256
55 3300005549 Ga0070704_100000311 Ga0070704_1000003114 256
56 3300005549 Ga0070704_100086222 Ga0070704_1000862223 256
57 3300005578 Ga0068854_100098381 Ga0068854_1000983812 256
58 3300005578 Ga0068854_100457432 Ga0068854_1004574321 256
59 3300005617 Ga0068859_100185929 Ga0068859_1001859292 256
60 3300005618 Ga0068864_100234517 Ga0068864_1002345172 256
61 3300005842 Ga0068858_100134046 Ga0068858_1001340462 256
62 3300005843 Ga0068860_100730981 Ga0068860_1007309812 256
63 3300006028 Ga0070717_10005066 Ga0070717_100050665 256
64 3300006358 Ga0068871_100215697 Ga0068871_1002156972 256
65 3300006852 Ga0075433_10021840 Ga0075433_100218404 256
66 3300006871 Ga0075434_100028426 Ga0075434_1000284266 256
67 3300006881 Ga0068865_100798594 Ga0068865_1007985941 256
68 3300006914 Ga0075436_100114507 Ga0075436_1001145072 256
69 3300006931 Ga0097620_100185925 Ga0097620_1001859252 256
70 3300007076 Ga0075435_100005849 Ga0075435_10000584910 256
71 3300009147 Ga0114129_10032045 Ga0114129_100320453 256
72 3300009177 Ga0105248_10067955 Ga0105248_100679556 256
73 3300009177 Ga0105248_10142348 Ga0105248_101423483 256
74 3300010375 Ga0105239_10527854 Ga0105239_105278542 256
75 3300013306 Ga0163162_10478375 Ga0163162_104783752 256
76 3300013308 Ga0157375_11103794 Ga0157375_111037941 256
77 3300014969 Ga0157376_10359481 Ga0157376_103594812 256
78 3300020070 Ga0206356_10625053 Ga0206356_106250533 256
79 3300025922 Ga0207646_10008380 Ga0207646_100083802 256
80 3300025922 Ga0207646_10167549 Ga0207646_101675492 256
81 3300025940 Ga0207691_10376260 Ga0207691_103762602 256
82 3300025941 Ga0207711_10241276 Ga0207711_102412762 256
83 3300025944 Ga0207661_10734696 Ga0207661_107346962 256
84 3300025981 Ga0207640_10006622 Ga0207640_100066226 256
85 3300026035 Ga0207703_10208528 Ga0207703_102085282 256
86 3300026067 Ga0207678_10002757 Ga0207678_1000275716 256
87 3300026095 Ga0207676_10036100 Ga0207676_100361003 256
88 3300026095 Ga0207676_10214562 Ga0207676_102145622 256
89 3300026121 Ga0207683_10320344 Ga0207683_103203441 256
90 3300028379 Ga0268266_10018202 Ga0268266_100182024 256
91 3300028381 Ga0268264_10511056 Ga0268264_105110562 256
92 3300031548 Ga0307408_100045764 Ga0307408_1000457643 256
93 3300031548 Ga0307408_100167140 Ga0307408_1001671402 256
94 3300031731 Ga0307405_10156272 Ga0307405_101562722 256
95 3300031824 Ga0307413_10034732 Ga0307413_100347322 256
96 3300031852 Ga0307410_10300012 Ga0307410_103000122 256
97 3300031901 Ga0307406_10019475 Ga0307406_100194754 256
98 3300031901 Ga0307406_10188941 Ga0307406_101889412 256
99 3300031901 Ga0307406_10243224 Ga0307406_102432242 256
100 3300031911 Ga0307412_10028732 Ga0307412_100287323 256
101 3300031911 Ga0307412_10029281 Ga0307412_100292812 256
102 3300032002 Ga0307416_100268084 Ga0307416_1002680842 256
103 3300032005 Ga0307411_10152465 Ga0307411_101524652 256
104 3300032126 Ga0307415_100008050 Ga0307415_1000080506 256
105 3300032126 Ga0307415_100054518 Ga0307415_1000545182 256
106 3300035410 Ga0373924_0087576 Ga0373924_0087576_413_1183 256
107 3300037471 Ga0395905_0027269 Ga0395905_0027269_615_1385 256
108 3300037471 Ga0395905_0324039 Ga0395905_0324039_631_1401 256
109 3300039453 Ga0436362_0044895 Ga0436362_0044895_360_1130 256
110 3300048905 Ga0496102_0291247 Ga0496102_0291247_102_872 256
111 3300049570 Ga0501033_0083947 Ga0501033_0083947_1383_2153 256
112 3300049572 Ga0501036_0025643 Ga0501036_0025643_1881_2651 256
113 3300049574 Ga0501038_0005038 Ga0501038_0005038_7802_8572 256
114 3300049575 Ga0501039_0022235 Ga0501039_0022235_2409_3179 256
115 3300049576 Ga0501040_0018272 Ga0501040_0018272_3048_3818 256
116 3300049576 Ga0501040_0032408 Ga0501040_0032408_2640_3410 256
117 3300049578 Ga0501042_0004049 Ga0501042_0004049_3407_4177 256
118 3300049579 Ga0501043_0127424 Ga0501043_0127424_880_1650 256
119 3300049584 Ga0501068_0084783 Ga0501068_0084783_850_1620 256
120 3300049587 Ga0501071_0115681 Ga0501071_0115681_655_1425 256
121 3300049588 Ga0501072_0004101 Ga0501072_0004101_2386_3156 256
122 3300049589 Ga0501073_0087997 Ga0501073_0087997_867_1637 256
123 3300049592 Ga0501076_0000078 Ga0501076_0000078_41418_42188 256
124 3300049593 Ga0501077_0104417 Ga0501077_0104417_273_1043 256
125 3300049741 Ga0501079_0062274 Ga0501079_0062274_1074_1844 256
126 3300049742 Ga0501080_0011979 Ga0501080_0011979_1552_2322 256
127 3300050507 nmdc:mga05p37_185031_c1 nmdc:mga05p37_185031_c1_91_861 256
128 3300050512 nmdc:mga0n895_201720_c1 nmdc:mga0n895_201720_c1_91_861 256
129 3300050513 nmdc:mga0rr50_20528_c1 nmdc:mga0rr50_20528_c1_2057_2827 256
130 3300050514 nmdc:mga08x19_56593_c1 nmdc:mga08x19_56593_c1_680_1450 256
131 3300050515 nmdc:mga0a205_14282_c1 nmdc:mga0a205_14282_c1_1645_2415 256
132 3300053104 Ga0500556_0043694 Ga0500556_0043694_231_1007 256
133 3300054114 Ga0501084_0002300 Ga0501084_0002300_3660_4430 256
134 3300060353 Ga0501082_0016462 Ga0501082_0016462_827_1597 256
135 3300061734 Ga0530510_0000006 Ga0530510_0000006_39690_40460 256
136 3300005290 Ga0065712_10074917 Ga0065712_100749173 257
137 3300005331 Ga0070670_100005243 Ga0070670_1000052437 257
138 3300005353 Ga0070669_100050877 Ga0070669_1000508773 257
139 3300005354 Ga0070675_100077753 Ga0070675_1000777531 257
140 3300005364 Ga0070673_100145284 Ga0070673_1001452842 257
141 3300005618 Ga0068864_100134011 Ga0068864_1001340112 257
142 3300006048 Ga0075363_100013357 Ga0075363_1000133574 257
143 3300013308 Ga0157375_10190351 Ga0157375_101903512 257
144 3300025923 Ga0207681_10016962 Ga0207681_100169622 257
145 3300025925 Ga0207650_10012697 Ga0207650_100126973 257
146 3300026095 Ga0207676_10210681 Ga0207676_102106812 257
147 3300026118 Ga0207675_100108509 Ga0207675_1001085093 257
148 3300042436 Ga0439435_0071622 Ga0439435_0071622_78_860 257
149 3300049591 Ga0501075_0190343 Ga0501075_0190343_557_1414 257
150 3300050490 nmdc:mga03n38_4287_c1 nmdc:mga03n38_4287_c1_2906_3712 257

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12804

NTP_transf_3

MobA-like NTP transferase domain

31

193

0.88

PF00483

NTP_transferase

Nucleotidyl transferase

30

259

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
1tzf-assembly1.cif.gz_A x-ray crystal structure of alpha-d-glucose-1-phosphate cytidylyltransferase from salmonella typhi 0.9147 2 257
1tzf-assembly1.cif.gz_A x-ray crystal structure of alpha-d-glucose-1-phosphate cytidylyltransferase from salmonella typhi 0.9008 2 257
1wvc-assembly1.cif.gz_A alpha-d-glucose-1-phosphate cytidylyltransferase complexed with ctp 0.8918 2 257
1wvc-assembly1.cif.gz_A alpha-d-glucose-1-phosphate cytidylyltransferase complexed with ctp 0.8817 2 257
4y7t-assembly1.cif.gz_A structural analysis of muru 0.838 1 249
ID Description Score Start End Superfamily
1tzfA00 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.9147 2 257 3.90.550.10
1tzfA00 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.9008 2 257 3.90.550.10
4y7vA00 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.834 1 247 3.90.550.10
4y7vA00 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.8266 1 247 3.90.550.10
af_L7N6A5_2_240_3.90.550.10 Alpha Beta;Alpha-Beta Complex;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A;Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.8045 2 249 3.90.550.10
ID Description Score Start End GO Terms
AF-A0A3D1M4I7-F1-model_v4 Glucose-1-phosphate cytidylyltransferase 0.9801 1 101 GO:0009058
GO:0047343
AF-A0A7C2ZVD1-F1-model_v4 Glucose-1-phosphate cytidylyltransferase (EC 2.7.7.33) 0.9744 1 257 GO:0009243
GO:0047343
AF-A0A7C2ZVD1-F1-model_v4 Glucose-1-phosphate cytidylyltransferase (EC 2.7.7.33) 0.9707 1 257 GO:0009243
GO:0047343
AF-A0A3D3U7I1-F1-model_v4 deleted 0.9705 1 97
AF-A0A533SJ48-F1-model_v4 Glucose-1-phosphate cytidylyltransferase 0.9624 1 126 GO:0009058
GO:0047343

Feature Viewer

pLDDT pTM Quality
89.87 0.86 High
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Predicted Structure (AlphaFold2)

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