F209568

General Info

Members Datasets Scaffolds Average Seq Length
150 101 138 533

Family's Representative Sequence

Representative Sequence 3300045051|Ga0451576_0124656|Ga0451576_0124656_314_2089
Length 591
Sequence MNAGMSHIDWGVIAVYLVGVVGIGVLAGFVRQKSGEGAHYFLADNSLKWPVIGLAMFAANISTVHLVSLAQSAYTSGLLYGNYEWMAGFTLILLSLFFAPLYLRTRVPTLPDYLERRYNRNCRDMLSLVSLFSAIVIHIGVALFTAAAVLCYIFGLPEGAPILGVPSMMFFIIALGVLTGIYTVVGGLLAVVWTESLQTVLLLVGAIAITVAGYQAIGGWDALATTLATYPHPLAGIEGVKDGVALSTKSFLNMAHPSGDKTVIANVPWYSILLGYPVIGIWYWCCDQTIVQRVLAAKDEKHARLGPLFCAFIKILPVFFFVLPGVICVALVQKGYFGAGVGPAASKDTYPFMITHLLPIGLKGLVTAAMLAAAMQTCSAALNSAATLFAYDIWKRWSPATPDHRLVLIGRWTTVVATILAIVLSPIFGHYGTIFQGLNTLICYVAPPITAVFLVGVFWKRANGRAAFLTMVSGAAMGAVCFTADFFKDSISGPNGFLTPGSAIASAFDWFARSLLSDFMLAAFGMFCLCVAIQVIASLAMPEPLKEESRPLVWEHWTEPLKARCGTGLSDYRIISAAVLVTFLVLYFIFK

Samples

Sample ID Description Type Environment
1 2775506987 Pedobacter ginsengisoli T01R-27 Isolate Unclassified
2 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
3 2818991460 Chitinophaga polysaccharea 1209 Isolate Unclassified
4 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
5 2883068021 Chitinophaga rhizosphaerae T16R-86 Isolate Rhizosphere
6 2904467357 Chitinophaga sancti 3198 Isolate Unclassified
7 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
8 2929239360 Chitinophaga sp. R-73072 Hybrid assembly Isolate Unclassified
9 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
10 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
11 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere
12 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
13 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
14 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
15 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
16 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
17 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
18 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
19 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
20 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
21 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
22 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
23 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
24 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
25 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
26 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
27 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
28 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
29 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
30 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
31 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
32 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
33 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
34 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
35 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
36 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
37 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
38 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
39 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
40 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
41 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
42 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
43 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
44 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
45 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
46 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
47 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
48 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
49 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
50 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
51 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
52 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
53 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
54 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
56 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
58 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
70 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
71 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
72 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
73 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
74 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
75 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
76 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
77 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
78 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
79 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
80 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
81 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
82 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
83 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
84 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
85 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
86 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
87 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
88 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
89 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
90 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
91 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
92 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
93 3300049673 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I13_A_3_drought Metagenome Rhizosphere
94 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
95 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
96 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
97 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
98 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
99 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
100 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
101 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 92
Metatranscriptomes 0
Isolates 8

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 12
Nodule 0
Rhizoplane 0
Rhizosphere 72.67
Stem 0
Stem Tuber 0
Unclassified 15.33

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25154J39366_1000012 3300002738 Bacteria 287601
2 rootH2_10008804 3300003320 Bacteria 29472
3 rootH2_10060228 3300003320 Bacteria 8774
4 rootH2_10103890 3300003320 Bacteria 3782
5 rootH2_10162856 3300003320 Bacteria 5435
6 rootL2_10058203 3300003322 Bacteria 3919
7 rootL2_10158928 3300003322 Unclassified 4874
8 JGI25160J50197_1006890 3300003354 Bacteria 4530
9 JGI25160J50197_1010759 3300003354 Bacteria 3287
10 Ga0055536_1000003 3300003781 Bacteria 447744
11 Ga0055536_1009656 3300003781 Bacteria 3953
12 Ga0055530_10004445 3300003791 Bacteria 7204
13 Ga0065165_1000043 3300005262 Bacteria 203850
14 Ga0065714_10003685 3300005288 Bacteria 6384
15 Ga0065714_10005255 3300005288 Bacteria 4039
16 Ga0065714_10010045 3300005288 Bacteria 2181
17 Ga0070714_100004483 3300005435 Bacteria 10520
18 Ga0070711_100000964 3300005439 Bacteria 15241
19 Ga0070681_10093717 3300005458 Bacteria 2952
20 Ga0070679_100009463 3300005530 Bacteria 9215
21 Ga0070684_100011670 3300005535 Bacteria 7006
22 Ga0068853_100002429 3300005539 Bacteria 13931
23 Ga0068853_100072427 3300005539 Bacteria 3003
24 Ga0068855_100001353 3300005563 Bacteria 30371
25 Ga0068855_100101989 3300005563 Unclassified 3303
26 Ga0068854_100025658 3300005578 Bacteria 4044
27 Ga0068856_100000425 3300005614 Bacteria 46387
28 Ga0068856_100069630 3300005614 Bacteria 3479
29 Ga0068852_100083429 3300005616 Bacteria 2842
30 Ga0068852_100124290 3300005616 Bacteria 2367
31 Ga0068860_100000491 3300005843 Bacteria 48922
32 Ga0070717_10132954 3300006028 Unclassified 2141
33 Ga0070716_100076770 3300006173 Bacteria 1981
34 Ga0070712_100000119 3300006175 Bacteria 41046
35 Ga0075434_100001428 3300006871 Bacteria 20068
36 Ga0075435_100006340 3300007076 Bacteria 8357
37 Ga0105240_10000242 3300009093 Bacteria 108001
38 Ga0105240_10000339 3300009093 Bacteria 87543
39 Ga0105240_10000996 3300009093 Bacteria 50604
40 Ga0105240_10015198 3300009093 Bacteria 10475
41 Ga0105240_10108907 3300009093 Bacteria 3355
42 Ga0105241_10010567 3300009174 Bacteria 6773
43 Ga0105241_10038580 3300009174 Bacteria 3601
44 Ga0105241_10063685 3300009174 Bacteria 2846
45 Ga0105237_10003611 3300009545 Bacteria 18275
46 Ga0105237_10014759 3300009545 Bacteria 8153
47 Ga0105237_10081891 3300009545 Bacteria 3218
48 Ga0105238_10008309 3300009551 Bacteria 10381
49 Ga0105238_10071522 3300009551 Bacteria 3466
50 Ga0105239_10000014 3300010375 Bacteria 325391
51 Ga0105239_10000180 3300010375 Bacteria 91772
52 Ga0105239_10002087 3300010375 Bacteria 25905
53 Ga0105239_10064320 3300010375 Bacteria 4027
54 Ga0157373_10003053 3300013100 Bacteria 12635
55 Ga0157373_10004887 3300013100 Bacteria 10087
56 Ga0157371_10010532 3300013102 Bacteria 7191
57 Ga0157371_10037940 3300013102 Bacteria 3448
58 Ga0157370_10023399 3300013104 Bacteria 6133
59 Ga0157370_10041419 3300013104 Bacteria 4443
60 Ga0157370_10099711 3300013104 Bacteria 2722
61 Ga0157369_10021028 3300013105 Bacteria 7295
62 Ga0157369_10045986 3300013105 Unclassified 4745
63 Ga0157374_10029886 3300013296 Bacteria 4942
64 Ga0157372_10000737 3300013307 Bacteria 35686
65 Ga0182005_1000103 3300015265 Bacteria 64268
66 Ga0163161_10000593 3300017792 Bacteria 29004
67 Ga0209436_100577 3300025208 Bacteria 15730
68 Ga0209437_100017 3300025233 Bacteria 694471
69 Ga0209646_1000009 3300025246 Bacteria 652154
70 Ga0209026_1000188 3300025250 Bacteria 90347
71 Ga0209130_1001302 3300025284 Bacteria 17089
72 Ga0209676_1000001 3300025292 Bacteria 1852142
73 Ga0209676_1000584 3300025292 Bacteria 54694
74 Ga0209758_1008296 3300025297 Bacteria 6785
75 Ga0209758_1011100 3300025297 Bacteria 5268
76 Ga0209050_1000016 3300025298 Bacteria 729149
77 Ga0207426_1000557 3300025302 Bacteria 51292
78 Ga0207426_1000564 3300025302 Bacteria 50590
79 Ga0207707_10137399 3300025912 Bacteria 2137
80 Ga0207707_10147841 3300025912 Bacteria 2054
81 Ga0207695_10000066 3300025913 Bacteria 334103
82 Ga0207695_10000241 3300025913 Bacteria 142030
83 Ga0207695_10000469 3300025913 Bacteria 87551
84 Ga0207695_10001001 3300025913 Bacteria 50058
85 Ga0207695_10017777 3300025913 Bacteria 8251
86 Ga0207695_10048867 3300025913 Bacteria 4464
87 Ga0207671_10005718 3300025914 Bacteria 11344
88 Ga0207671_10009445 3300025914 Bacteria 8153
89 Ga0207693_10000851 3300025915 Bacteria 27251
90 Ga0207663_10009775 3300025916 Bacteria 5077
91 Ga0207694_10015125 3300025924 Bacteria 5819
92 Ga0207665_10029011 3300025939 Bacteria 3658
93 Ga0207667_10006952 3300025949 Bacteria 13676
94 Ga0207667_10084489 3300025949 Bacteria 3286
95 Ga0207640_10023489 3300025981 Bacteria 3706
96 Ga0207640_10131855 3300025981 Bacteria 1808
97 Ga0207639_10014430 3300026041 Bacteria 5557
98 Ga0207702_10000935 3300026078 Bacteria 30154
99 Ga0307517_10006315 3300028786 Bacteria 17589
100 Ga0307511_10000264 3300030521 Bacteria 54303
101 Ga0265340_10002293 3300031247 Bacteria 10940
102 Ga0265313_10025310 3300031595 Bacteria 3148
103 Ga0316576_10104396 3300031727 Bacteria 2121
104 Ga0307414_10000060 3300032004 Bacteria 112029
105 Ga0307414_10074846 3300032004 Unclassified 2455
106 Ga0307510_10000497 3300033180 Bacteria 38862
107 Ga0395898_0012540 3300037466 Bacteria 8766
108 Ga0451577_0000665 3300042876 Bacteria 54113
109 Ga0451577_0027875 3300042876 Bacteria 5111
110 Ga0451577_0181974 3300042876 Bacteria 1895
111 Ga0453684_0002744 3300044712 Bacteria 41702
112 Ga0453684_0003271 3300044712 Bacteria 36994
113 Ga0453684_0080427 3300044712 Unclassified 4069
114 Ga0451576_0000455 3300045051 Bacteria 92690
115 Ga0451576_0124656 3300045051 Unclassified 2684
116 Ga0451576_0249547 3300045051 Unclassified 1855
117 Ga0495582_0016634 3300046473 Bacteria 4027
118 Ga0495616_0001637 3300046513 Bacteria 15353
119 Ga0495630_0000263 3300046517 Bacteria 42657
120 Ga0495586_0000052 3300046535 Bacteria 68762
121 Ga0495634_0010452 3300046642 Bacteria 6798
122 Ga0495625_0035258 3300046660 Bacteria 3689
123 Ga0495658_0030710 3300046683 Bacteria 2920
124 Ga0495613_0041103 3300046689 Bacteria 3425
125 Ga0495674_0002378 3300047319 Bacteria 18411
126 Ga0495676_0003791 3300047321 Bacteria 13742
127 Ga0496121_0000028 3300048924 Bacteria 439193
128 Ga0496126_0044902 3300048929 Unclassified 4066
129 Ga0501034_0016696 3300049571 Bacteria 7527
130 Ga0501034_0126456 3300049571 Bacteria 2541
131 Ga0501240_001127 3300049673 Bacteria 2502
132 Ga0501044_0022755 3300049823 Bacteria 6673
133 nmdc:mga0n895_5499_c1 3300050512 Bacteria 10602
134 nmdc:mga0rr50_4407_c1 3300050513 Bacteria 8273
135 nmdc:mga08x19_13335_c1 3300050514 Bacteria 4966
136 Ga0500618_000150 3300053125 Bacteria 57266
137 Ga0500622_0002562 3300053156 Bacteria 13019
138 Ga0501084_0014045 3300054114 Bacteria 6631

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300044712 Ga0453684_0003271 Ga0453684_0003271_3197_4843 449
2 3300003322 rootL2_10158928 rootL2_101589284 463
3 3300045051 Ga0451576_0249547 Ga0451576_0249547_15_1532 465
4 3300006871 Ga0075434_100001428 Ga0075434_10000142812 466
5 3300007076 Ga0075435_100006340 Ga0075435_1000063402 466
6 3300050512 nmdc:mga0n895_5499_c1 nmdc:mga0n895_5499_c1_5546_7180 466
7 3300050513 nmdc:mga0rr50_4407_c1 nmdc:mga0rr50_4407_c1_1179_2813 466
8 3300050514 nmdc:mga08x19_13335_c1 nmdc:mga08x19_13335_c1_549_2183 466
9 3300005439 Ga0070711_100000964 Ga0070711_1000009647 473
10 3300006173 Ga0070716_100076770 Ga0070716_1000767702 473
11 3300006175 Ga0070712_100000119 Ga0070712_10000011942 473
12 3300025915 Ga0207693_10000851 Ga0207693_100008514 473
13 3300025916 Ga0207663_10009775 Ga0207663_100097752 473
14 3300025939 Ga0207665_10029011 Ga0207665_100290112 473
15 3300053156 Ga0500622_0002562 Ga0500622_0002562_8187_9782 473
16 3300032004 Ga0307414_10000060 Ga0307414_1000006052 475
17 3300048929 Ga0496126_0044902 Ga0496126_0044902_1714_3336 479
18 3300005458 Ga0070681_10093717 Ga0070681_100937172 480
19 3300005614 Ga0068856_100069630 Ga0068856_1000696302 480
20 3300009093 Ga0105240_10108907 Ga0105240_101089073 480
21 3300009174 Ga0105241_10010567 Ga0105241_100105675 480
22 3300013100 Ga0157373_10004887 Ga0157373_100048872 480
23 3300013296 Ga0157374_10029886 Ga0157374_100298863 480
24 3300025912 Ga0207707_10137399 Ga0207707_101373992 480
25 3300049571 Ga0501034_0126456 Ga0501034_0126456_43_1683 481
26 3300006028 Ga0070717_10132954 Ga0070717_101329542 482
27 3300003320 rootH2_10103890 rootH2_101038901 486
28 3300046689 Ga0495613_0041103 Ga0495613_0041103_1029_2648 486
29 3300003320 rootH2_10008804 rootH2_100088047 490
30 3300049571 Ga0501034_0016696 Ga0501034_0016696_3493_5187 490
31 3300032004 Ga0307414_10074846 Ga0307414_100748462 491
32 3300042876 Ga0451577_0027875 Ga0451577_0027875_889_2586 492
33 3300005535 Ga0070684_100011670 Ga0070684_1000116702 493
34 3300005563 Ga0068855_100001353 Ga0068855_10000135310 493
35 3300009093 Ga0105240_10000996 Ga0105240_1000099610 493
36 3300013105 Ga0157369_10045986 Ga0157369_100459862 493
37 3300013307 Ga0157372_10000737 Ga0157372_1000073711 493
38 3300025913 Ga0207695_10000241 Ga0207695_1000024173 493
39 3300025949 Ga0207667_10006952 Ga0207667_100069522 493
40 3300005530 Ga0070679_100009463 Ga0070679_1000094635 494
41 3300005539 Ga0068853_100072427 Ga0068853_1000724272 494
42 3300005616 Ga0068852_100083429 Ga0068852_1000834292 494
43 3300009174 Ga0105241_10038580 Ga0105241_100385801 494
44 3300013100 Ga0157373_10003053 Ga0157373_100030532 494
45 3300013102 Ga0157371_10037940 Ga0157371_100379402 494
46 3300013104 Ga0157370_10099711 Ga0157370_100997111 494
47 3300013105 Ga0157369_10021028 Ga0157369_100210281 494
48 3300025912 Ga0207707_10147841 Ga0207707_101478411 494
49 3300025913 Ga0207695_10001001 Ga0207695_1000100121 494
50 3300025949 Ga0207667_10084489 Ga0207667_100844892 494
51 3300054114 Ga0501084_0014045 Ga0501084_0014045_779_2428 494
52 3300003781 Ga0055536_1009656 Ga0055536_10096562 497
53 3300005262 Ga0065165_1000043 Ga0065165_100004336 497
54 3300025292 Ga0209676_1000584 Ga0209676_100058418 497
55 3300031727 Ga0316576_10104396 Ga0316576_101043961 497
56 3300013104 Ga0157370_10041419 Ga0157370_100414195 498
57 3300046513 Ga0495616_0001637 Ga0495616_0001637_10066_11721 499
58 3300005563 Ga0068855_100101989 Ga0068855_1001019892 500
59 3300005614 Ga0068856_100000425 Ga0068856_10000042526 500
60 3300026078 Ga0207702_10000935 Ga0207702_1000093520 500
61 3300044712 Ga0453684_0002744 Ga0453684_0002744_13197_14891 502
62 3300009093 Ga0105240_10015198 Ga0105240_100151985 505
63 3300009545 Ga0105237_10081891 Ga0105237_100818913 505
64 3300010375 Ga0105239_10002087 Ga0105239_100020879 505
65 3300025913 Ga0207695_10048867 Ga0207695_100488672 505
66 3300025981 Ga0207640_10131855 Ga0207640_101318551 506
67 iso_pu_bacteria 2818991442 2819572286 507
68 iso_pu_bacteria 2821136567 2821140350 507
69 iso_pu_bacteria 2904467357 2904473933 507
70 3300010375 Ga0105239_10000014 Ga0105239_10000014185 508
71 3300010375 Ga0105239_10064320 Ga0105239_100643202 509
72 3300033180 Ga0307510_10000497 Ga0307510_1000049710 510
73 3300049673 Ga0501240_001127 Ga0501240_001127_531_2177 510
74 3300003320 rootH2_10162856 rootH2_101628562 511
75 3300015265 Ga0182005_1000103 Ga0182005_100010344 511
76 3300048924 Ga0496121_0000028 Ga0496121_0000028_408470_410047 511
77 3300045051 Ga0451576_0000455 Ga0451576_0000455_28091_29800 512
78 3300053125 Ga0500618_000150 Ga0500618_000150_14290_15945 512
79 3300017792 Ga0163161_10000593 Ga0163161_100005939 513
80 3300030521 Ga0307511_10000264 Ga0307511_100002649 513
81 3300005578 Ga0068854_100025658 Ga0068854_1000256583 516
82 3300009545 Ga0105237_10003611 Ga0105237_100036117 516
83 3300009545 Ga0105237_10014759 Ga0105237_100147594 516
84 3300025914 Ga0207671_10005718 Ga0207671_100057186 516
85 3300025914 Ga0207671_10009445 Ga0207671_100094454 516
86 3300025981 Ga0207640_10023489 Ga0207640_100234893 516
87 3300037466 Ga0395898_0012540 Ga0395898_0012540_969_2693 516
88 3300010375 Ga0105239_10000180 Ga0105239_100001804 517
89 3300025233 Ga0209437_100017 Ga0209437_100017466 517
90 3300044712 Ga0453684_0080427 Ga0453684_0080427_721_2397 517
91 3300046660 Ga0495625_0035258 Ga0495625_0035258_577_2232 517
92 3300031595 Ga0265313_10025310 Ga0265313_100253102 518
93 iso_pu_bacteria 2929239360 2929242140 518
94 3300005435 Ga0070714_100004483 Ga0070714_1000044837 519
95 3300042876 Ga0451577_0000665 Ga0451577_0000665_32852_34543 519
96 3300009551 Ga0105238_10008309 Ga0105238_100083095 520
97 3300025924 Ga0207694_10015125 Ga0207694_100151252 520
98 3300042876 Ga0451577_0181974 Ga0451577_0181974_26_1720 520
99 3300046473 Ga0495582_0016634 Ga0495582_0016634_2169_3860 520
100 3300046517 Ga0495630_0000263 Ga0495630_0000263_13556_15247 520
101 3300046535 Ga0495586_0000052 Ga0495586_0000052_11458_13149 520
102 3300046642 Ga0495634_0010452 Ga0495634_0010452_4824_6515 520
103 3300046683 Ga0495658_0030710 Ga0495658_0030710_800_2491 520
104 3300047319 Ga0495674_0002378 Ga0495674_0002378_4805_6496 520
105 3300047321 Ga0495676_0003791 Ga0495676_0003791_1170_2861 520
106 3300049823 Ga0501044_0022755 Ga0501044_0022755_3547_5241 520
107 3300005539 Ga0068853_100002429 Ga0068853_10000242912 522
108 3300005616 Ga0068852_100124290 Ga0068852_1001242902 522
109 3300009551 Ga0105238_10071522 Ga0105238_100715223 522
110 3300025913 Ga0207695_10017777 Ga0207695_100177774 522
111 3300026041 Ga0207639_10014430 Ga0207639_100144306 522
112 3300045051 Ga0451576_0124656 Ga0451576_0124656_314_2089 522
113 iso_pu_bacteria 2929177148 2929180337 522
114 iso_pu_bacteria 2945977869 2945982730 522
115 iso_pu_bacteria 2946013367 2946017877 522
116 3300005288 Ga0065714_10010045 Ga0065714_100100452 523
117 3300031247 Ga0265340_10002293 Ga0265340_100022938 524
118 3300003320 rootH2_10060228 rootH2_100602286 526
119 iso_pu_bacteria 2818991460 2819679519 526
120 iso_pu_bacteria 2883068021 2883068951 527
121 3300009093 Ga0105240_10000242 Ga0105240_1000024261 528
122 3300009093 Ga0105240_10000339 Ga0105240_1000033943 528
123 3300025913 Ga0207695_10000066 Ga0207695_10000066213 528
124 3300025913 Ga0207695_10000469 Ga0207695_1000046944 528
125 iso_pu_bacteria 2775506987 2776615676 528
126 3300003354 JGI25160J50197_1006890 JGI25160J50197_10068901 530
127 3300005843 Ga0068860_100000491 Ga0068860_10000049123 530
128 3300025208 Ga0209436_100577 Ga0209436_1005775 530
129 3300025284 Ga0209130_1001302 Ga0209130_100130210 530
130 3300025302 Ga0207426_1000557 Ga0207426_100055721 530
131 iso_pu_bacteria 2929921140 2929924258 530
132 iso_pu_bacteria 8003151029 8003156118 530
133 3300003322 rootL2_10058203 rootL2_100582032 531
134 3300003781 Ga0055536_1000003 Ga0055536_1000003184 531
135 3300003791 Ga0055530_10004445 Ga0055530_100044452 531
136 3300025292 Ga0209676_1000001 Ga0209676_1000001519 531
137 3300025298 Ga0209050_1000016 Ga0209050_1000016184 531
138 3300005288 Ga0065714_10003685 Ga0065714_100036855 532
139 3300005288 Ga0065714_10005255 Ga0065714_100052553 532
140 3300009174 Ga0105241_10063685 Ga0105241_100636852 532
141 3300013102 Ga0157371_10010532 Ga0157371_100105323 532
142 3300013104 Ga0157370_10023399 Ga0157370_100233995 532
143 3300028786 Ga0307517_10006315 Ga0307517_100063157 532
144 3300002738 JGI25154J39366_1000012 JGI25154J39366_1000012222 534
145 3300003354 JGI25160J50197_1010759 JGI25160J50197_10107592 534
146 3300025246 Ga0209646_1000009 Ga0209646_100000951 534
147 3300025250 Ga0209026_1000188 Ga0209026_100018851 534
148 3300025297 Ga0209758_1008296 Ga0209758_10082965 534
149 3300025297 Ga0209758_1011100 Ga0209758_10111006 534
150 3300025302 Ga0207426_1000564 Ga0207426_100056411 534

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00474

SSF

Sodium:solute symporter family

40

474

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
2xq2-assembly1.cif.gz_B structure of the k294a mutant of vsglt 0.8972 48 497
2xq2-assembly1.cif.gz_A structure of the k294a mutant of vsglt 0.887 3 497
7sl8-assembly1.cif.gz_A cryoem structure of sglt1 at 3.4 a resolution 0.8692 3 501
7sla-assembly1.cif.gz_A cryoem structure of sglt1 at 3.15 angstrom resolution 0.8581 3 500
8hin-assembly1.cif.gz_A structure of human sglt2-map17 complex with phlorizin 0.8508 3 534
ID Description Score Start End Superfamily
af_F1QBX6_71_590_1.20.1730.10 Mainly Alpha;Up-down Bundle;Sodium/glucose cotransporter;Sodium/glucose cotransporter 0.8935 38 511 1.20.1730.10
2xq2A01 Mainly Alpha;Up-down Bundle;Sodium/glucose cotransporter;Sodium/glucose cotransporter 0.8842 3 497 1.20.1730.10
af_P31448_28_554_1.20.1730.10 Mainly Alpha;Up-down Bundle;Sodium/glucose cotransporter;Sodium/glucose cotransporter 0.8828 36 533 1.20.1730.10
af_A0A0G2K669_1_416_1.20.1730.10 Mainly Alpha;Up-down Bundle;Sodium/glucose cotransporter;Sodium/glucose cotransporter 0.8567 131 523 1.20.1730.10
af_Q9VBK1_152_658_1.20.1730.10 Mainly Alpha;Up-down Bundle;Sodium/glucose cotransporter;Sodium/glucose cotransporter 0.8507 35 504 1.20.1730.10
ID Description Score Start End GO Terms
AF-A0A1F5BSH4-F1-model_v4 Sodium:solute symporter 0.9698 52 467 GO:0005412
GO:0005886
AF-A0A1F5BSH4-F1-model_v4 Sodium:solute symporter 0.9605 52 467 GO:0005412
GO:0005886
AF-A0A4Q3E279-F1-model_v4 Sodium:solute symporter 0.9593 176 533 GO:0005412
GO:0005886
AF-A0A7V3JMR7-F1-model_v4 Sodium:solute symporter 0.9538 1 533 GO:0005412
GO:0005886
AF-A0A6C2UFA2-F1-model_v4 Sodium/glucose cotransporter 0.9518 1 533 GO:0005412
GO:0005886

Feature Viewer

pLDDT pTM Quality
88.39 0.87 High
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Predicted Structure (AlphaFold2)

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