F208605

General Info

Members Datasets Scaffolds Average Seq Length
150 92 142 1101

Family's Representative Sequence

Representative Sequence 3300009094|Ga0111539_10005518|Ga0111539_100055189
Length 1211
Sequence MCLCVVVFWKIFPLEFSRIGDEEIGNKEFKMIPLFPITLSPYQLKLRNRQKPMKQNALSILIAFLLFQCKEESEKLFTSVPAGVSGIGFSNVITSSDSTSVLDSEYLYNGGGVAVGDINNDGLLDVYFTGNMVSSKLYLNKGNLKFEDVTEKAKVGTTTWANGASMVDINQDGYTDIYVSVGGTRKTPEKDRANLLFINNGDGTFTEQAKQYGLADSGYGIHSTFFDYDRDGDLDMYLLRNSFVNYHRNRSKPKMINGEAESTDKLFRNNGDLTFTDVSREAGILIEGFGLGVVVSDINEDGWPDVYASNDFITNDLLYINNQDGTFTNRAAQYLKHQTFNGMGSDVSDYNNDGKVDIVVVDMLPEDNKRWKLTSRGNTYDEYQNGIKNGYEHQFIRNTLQLNNGNGSFSEIGQLAGVDATEWSWAPLFADYDNDGLKDLFISNGYRQDIINLDFVVYGDKELTMGQLPQADDDARRALLNELPGIKLHNYMYKNKGDLTFSDESESWGMGVPTYSSGAAYADLDNDGDLDMVINNIDEEAMVWESHLNQLKTAPKPNYLRISLAGPTLNKEGFGATVILKTKGTLQHQYFSPFRGYLSTVEPYLHFGLGAFATADSVEVIWPDGKYQLLTNVNTNQVLKIDYAQATVREGNKKSVPVTLFDSADRAWGLNYNHVENTFVDFKLQPTLPHMHSRGGPGVAVGDINSDGREDFYIGGAYGSSGAMFIQSVDGKFDKKILAKDSAIDQTGVLLFDADYAVSGGAEQPKDSEHYQDHLYVNDGHGSFTPATNALPQMRQSGSCVVAGDYDRDGDLDLFVGGRIIPKEYPMPAGSVLLRNDSKNGIPKFTDVTTGVEGLKNAGLVCSAIWSDYDSDGWLDLILVGEFMRVTFFHNDKGILSDQTDDSGLESSSGWWNSLVAGDFDADGDTDYIGGNQGLNSHFSASPSEPLCIHASDYNKDGRLDPVMSYYVQGIRYVGHSRDNLIDQINSIRGRFRTYTDYANATFEETFLPEELSEAYVVCTERFETSYIENLGKGKFRISALPLIAQISAIYGMVSGDYDDDGNLDVLMVGNSYAPEISSGRDDALIGLFLKGDGKGNFKSVDVSASGFFADLDAKGLASLLLPNGHELMIIANNDGPMQTYVTHKVGKYYHAAPGDAYVMMTLKNGKQRKHEFYFGSTYLSSSSRVVKIPSNINELMVYDIKGVSRKVNVN

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2599185184 Mucilaginibacter sp. NFR10 Isolate Rhizoplane
3 2775506987 Pedobacter ginsengisoli T01R-27 Isolate Unclassified
4 2910245624 Adhaeribacter radiodurans KUDC8001 Isolate Rhizosphere
5 2919437846 Mucilaginibacter pocheonensis 3262 Isolate Rhizosphere
6 2928078545 Mucilaginibacter rubeus 1215 Isolate Unclassified
7 2928147474 Mucilaginibacter rubeus 2025 Isolate Unclassified
8 2932082852 Mucilaginibacter sp. 3215 Isolate Rhizosphere
9 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
10 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
11 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
12 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
13 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
14 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
15 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
16 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
17 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
18 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
19 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
20 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
21 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
22 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
23 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
24 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
25 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
26 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
27 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
28 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
29 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
30 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
31 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
32 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
33 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
34 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
35 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
36 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
37 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
38 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
39 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
40 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
41 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
42 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
43 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
44 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
45 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
46 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
47 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
48 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
49 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
50 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
51 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
52 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
53 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
54 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
73 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
74 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
75 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
76 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
77 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
78 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
79 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
80 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
81 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
82 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
83 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
84 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
85 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
86 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
87 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
88 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
89 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
90 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
91 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
92 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 94
Metatranscriptomes 0
Isolates 6

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.67
Nodule 0
Rhizoplane 0.67
Rhizosphere 77.33
Stem 0
Stem Tuber 0
Unclassified 15.33

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_301064 2162886007 Bacteria 32696
2 JGI24735J21928_10000001 3300002067 Bacteria 650042
3 JGI25162J39368_1000024 3300002737 Bacteria 229507
4 rootH1_10002076 3300003316 Bacteria 29354
5 rootH1_10002076 3300003323 Bacteria 13429
6 rootH1_10006040 3300003316 Bacteria 22506
7 rootH1_10052371 3300003316 Bacteria 31617
8 rootH2_10001413 3300003320 Bacteria 30001
9 rootH2_10003550 3300003320 Bacteria 62481
10 rootH2_10006073 3300003320 Bacteria 24220
11 rootL2_10001164 3300003322 Bacteria 9004
12 rootL2_10132181 3300003322 Bacteria 15845
13 rootH1_10009140 3300003323 Bacteria 116095
14 rootH1_10015492 3300003323 Bacteria 90717
15 rootH1_10021053 3300003323 Bacteria 14174
16 rootH1_10022844 3300003316 Bacteria 2893
17 rootH1_10022844 3300003323 Bacteria 18593
18 rootH1_10067107 3300003323 Bacteria 12087
19 JGI25160J50197_1000749 3300003354 Bacteria 17612
20 Ga0055531_10000110 3300003794 Bacteria 89725
21 Ga0065714_10002263 3300005288 Bacteria 65514
22 Ga0065714_10002864 3300005288 Bacteria 54801
23 Ga0065704_10000229 3300005289 Bacteria 80338
24 Ga0065704_10070795 3300005289 Bacteria 16057
25 Ga0070660_100001312 3300005339 Bacteria 16942
26 Ga0070661_100018930 3300005344 Bacteria 4903
27 Ga0070668_100008231 3300005347 Bacteria 7742
28 Ga0070669_100001284 3300005353 Bacteria 18150
29 Ga0070669_100003810 3300005353 Bacteria 10896
30 Ga0070675_100007296 3300005354 Bacteria 8532
31 Ga0070662_100000130 3300005457 Bacteria 42139
32 Ga0070684_100001351 3300005535 Bacteria 17565
33 Ga0068853_100007899 3300005539 Bacteria 8531
34 Ga0070672_100019181 3300005543 Unclassified 4961
35 Ga0068855_100016212 3300005563 Bacteria 8960
36 Ga0068855_100055456 3300005563 Bacteria 4654
37 Ga0070664_100024739 3300005564 Bacteria 4971
38 Ga0070664_100026296 3300005564 Bacteria 4827
39 Ga0068857_100002525 3300005577 Bacteria 14977
40 Ga0068857_100030356 3300005577 Unclassified 4773
41 Ga0068859_100000727 3300005617 Bacteria 33122
42 Ga0068859_100000919 3300005617 Bacteria 30167
43 Ga0068859_100019372 3300005617 Bacteria 6837
44 Ga0068861_100007960 3300005719 Bacteria 7294
45 Ga0068862_100003196 3300005844 Bacteria 14194
46 Ga0068871_100013732 3300006358 Bacteria 6022
47 Ga0075428_100018210 3300006844 Bacteria 7762
48 Ga0097620_100000727 3300006931 Bacteria 33122
49 Ga0097620_100000919 3300006931 Bacteria 30167
50 Ga0097620_100019370 3300006931 Bacteria 6837
51 Ga0105240_10000483 3300009093 Bacteria 73606
52 Ga0105240_10000662 3300009093 Bacteria 63312
53 Ga0111539_10002278 3300009094 Bacteria 25544
54 Ga0111539_10004577 3300009094 Bacteria 18073
55 Ga0111539_10005518 3300009094 Bacteria 16365
56 Ga0111539_10006085 3300009094 Bacteria 15574
57 Ga0111539_10025776 3300009094 Bacteria 7200
58 Ga0105237_10002044 3300009545 Bacteria 25661
59 Ga0105237_10002424 3300009545 Bacteria 23159
60 Ga0105237_10009821 3300009545 Bacteria 10234
61 Ga0105237_10028168 3300009545 Bacteria 5725
62 Ga0105249_10001308 3300009553 Bacteria 21834
63 Ga0105249_10002884 3300009553 Bacteria 14846
64 Ga0105249_10022491 3300009553 Bacteria 5648
65 Ga0105239_10000062 3300010375 Bacteria 153782
66 Ga0105239_10000077 3300010375 Bacteria 135944
67 Ga0105239_10000084 3300010375 Bacteria 130978
68 Ga0105239_10000168 3300010375 Bacteria 94279
69 Ga0105239_10000253 3300010375 Bacteria 79942
70 Ga0105239_10024987 3300010375 Bacteria 6580
71 Ga0157373_10000406 3300013100 Bacteria 34546
72 Ga0157373_10033996 3300013100 Bacteria 3663
73 Ga0157371_10002028 3300013102 Bacteria 20000
74 Ga0157371_10002461 3300013102 Bacteria 17645
75 Ga0157370_10007093 3300013104 Bacteria 12240
76 Ga0163162_10013040 3300013306 Bacteria 8112
77 Ga0157372_10004399 3300013307 Bacteria 15029
78 Ga0157375_10002891 3300013308 Bacteria 14879
79 Ga0157375_10015057 3300013308 Bacteria 6917
80 Ga0157380_10000317 3300014326 Bacteria 29142
81 Ga0157380_10016202 3300014326 Bacteria 5492
82 Ga0182008_10000012 3300014497 Bacteria 297475
83 Ga0157377_10003478 3300014745 Bacteria 7130
84 Ga0209437_100017 3300025233 Bacteria 694471
85 Ga0207426_1000170 3300025302 Bacteria 164216
86 Ga0209257_1000006 3300025304 Bacteria 1570111
87 Ga0207688_10004272 3300025901 Bacteria 7788
88 Ga0207647_10000170 3300025904 Bacteria 52044
89 Ga0207645_10003246 3300025907 Bacteria 12423
90 Ga0207643_10001653 3300025908 Bacteria 12522
91 Ga0207643_10006409 3300025908 Bacteria 6301
92 Ga0207695_10000031 3300025913 Bacteria 526801
93 Ga0207695_10000652 3300025913 Bacteria 68928
94 Ga0207671_10001128 3300025914 Bacteria 32167
95 Ga0207671_10002569 3300025914 Bacteria 19250
96 Ga0207671_10006189 3300025914 Bacteria 10745
97 Ga0207671_10008578 3300025914 Bacteria 8643
98 Ga0207657_10001601 3300025919 Bacteria 24346
99 Ga0207649_10011219 3300025920 Bacteria 4936
100 Ga0207659_10005832 3300025926 Bacteria 7506
101 Ga0207659_10007073 3300025926 Bacteria 6888
102 Ga0207706_10000279 3300025933 Bacteria 55729
103 Ga0207689_10005563 3300025942 Bacteria 11251
104 Ga0207679_10023026 3300025945 Bacteria 4252
105 Ga0207651_10030202 3300025960 Unclassified 3446
106 Ga0207677_10009270 3300026023 Bacteria 5531
107 Ga0207648_10013998 3300026089 Bacteria 7434
108 Ga0207674_10003748 3300026116 Bacteria 18541
109 Ga0207675_100002794 3300026118 Bacteria 17152
110 Ga0207675_100004365 3300026118 Bacteria 13664
111 Ga0207675_100007367 3300026118 Bacteria 10398
112 Ga0207683_10011592 3300026121 Bacteria 7527
113 Ga0307511_10000114 3300030521 Bacteria 72895
114 Ga0307509_10007702 3300031507 Bacteria 13985
115 Ga0307509_10010700 3300031507 Bacteria 11192
116 Ga0307412_10000045 3300031911 Bacteria 165021
117 Ga0307416_100002901 3300032002 Bacteria 9991
118 Ga0307416_100006073 3300032002 Bacteria 7523
119 Ga0307414_10000077 3300032004 Bacteria 91719
120 Ga0307414_10000867 3300032004 Bacteria 15462
121 Ga0307414_10001117 3300032004 Bacteria 13707
122 Ga0307510_10000416 3300033180 Bacteria 40773
123 Ga0307510_10000492 3300033180 Bacteria 39015
124 Ga0307510_10010692 3300033180 Bacteria 10909
125 Ga0395905_0045404 3300037471 Bacteria 4120
126 Ga0453684_0002787 3300044712 Bacteria 41321
127 Ga0453684_0007118 3300044712 Bacteria 20848
128 Ga0451576_0003001 3300045051 Bacteria 23860
129 Ga0451576_0035864 3300045051 Bacteria 5259
130 Ga0495650_0000057 3300046471 Bacteria 303569
131 Ga0495585_0004006 3300046492 Bacteria 9698
132 Ga0495606_0000788 3300046507 Bacteria 48492
133 Ga0495610_0001605 3300046512 Bacteria 19925
134 Ga0495616_0015380 3300046513 Bacteria 4255
135 Ga0495625_0000003 3300046660 Bacteria 686847
136 Ga0495649_0000002 3300046694 Bacteria 1093458
137 Ga0495660_0010438 3300046810 Bacteria 5401
138 nmdc:mga08y16_5058_c1 3300050511 Bacteria 13779
139 Ga0500651_0000233 3300053093 Bacteria 34519
140 Ga0500616_0000009 3300053153 Bacteria 779095
141 Ga0500622_0000004 3300053156 Bacteria 557587
142 Ga0500622_0000005 3300053156 Bacteria 502443

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300031507 Ga0307509_10010700 Ga0307509_100107004 984
2 3300026023 Ga0207677_10009270 Ga0207677_100092702 1026
3 3300003316 rootH1_10052371 rootH1_1005237112 1033
4 3300003322 rootL2_10132181 rootL2_1013218111 1033
5 3300003323 rootH1_10022844 rootH1_100228449 1033
6 3300003320 rootH2_10003550 rootH2_100035508 1036
7 3300046507 Ga0495606_0000788 Ga0495606_0000788_5599_8748 1037
8 3300046513 Ga0495616_0015380 Ga0495616_0015380_506_3658 1038
9 3300046660 Ga0495625_0000003 Ga0495625_0000003_290725_293877 1038
10 3300046694 Ga0495649_0000002 Ga0495649_0000002_713116_716268 1038
11 3300009094 Ga0111539_10002278 Ga0111539_100022788 1040
12 3300009094 Ga0111539_10006085 Ga0111539_100060852 1041
13 3300003323 rootH1_10067107 rootH1_100671073 1044
14 3300010375 Ga0105239_10000253 Ga0105239_100002533 1044
15 3300005564 Ga0070664_100026296 Ga0070664_1000262962 1048
16 3300025945 Ga0207679_10023026 Ga0207679_100230262 1048
17 3300003323 rootH1_10015492 rootH1_1001549239 1049
18 3300003320 rootH2_10001413 rootH2_100014132 1051
19 3300005339 Ga0070660_100001312 Ga0070660_1000013125 1053
20 3300025919 Ga0207657_10001601 Ga0207657_1000160117 1053
21 3300053153 Ga0500616_0000009 Ga0500616_0000009_204689_207973 1054
22 3300009093 Ga0105240_10000662 Ga0105240_1000066232 1055
23 3300025913 Ga0207695_10000652 Ga0207695_1000065241 1055
24 3300003322 rootL2_10001164 rootL2_100011643 1057
25 3300009545 Ga0105237_10028168 Ga0105237_100281682 1057
26 3300010375 Ga0105239_10000084 Ga0105239_10000084107 1057
27 3300025914 Ga0207671_10006189 Ga0207671_100061895 1057
28 3300053156 Ga0500622_0000005 Ga0500622_0000005_470046_473300 1057
29 3300037471 Ga0395905_0045404 Ga0395905_0045404_198_3473 1058
30 iso_pu_bacteria 2928078545 2928079253 1059
31 iso_pu_bacteria 2928147474 2928148374 1059
32 3300013307 Ga0157372_10004399 Ga0157372_100043994 1061
33 3300046492 Ga0495585_0004006 Ga0495585_0004006_1421_4648 1061
34 3300031507 Ga0307509_10007702 Ga0307509_100077025 1062
35 3300044712 Ga0453684_0007118 Ga0453684_0007118_9771_13079 1065
36 3300045051 Ga0451576_0035864 Ga0451576_0035864_1359_4667 1065
37 3300009093 Ga0105240_10000483 Ga0105240_1000048332 1067
38 3300025913 Ga0207695_10000031 Ga0207695_1000003131 1067
39 3300003794 Ga0055531_10000110 Ga0055531_1000011019 1070
40 3300009545 Ga0105237_10002044 Ga0105237_100020449 1070
41 3300025304 Ga0209257_1000006 Ga0209257_10000061088 1070
42 3300025914 Ga0207671_10002569 Ga0207671_100025699 1070
43 3300032002 Ga0307416_100002901 Ga0307416_1000029014 1071
44 3300005457 Ga0070662_100000130 Ga0070662_10000013020 1072
45 3300025904 Ga0207647_10000170 Ga0207647_1000017025 1072
46 3300025933 Ga0207706_10000279 Ga0207706_1000027913 1072
47 3300005617 Ga0068859_100019372 Ga0068859_1000193723 1073
48 3300006931 Ga0097620_100019370 Ga0097620_1000193703 1073
49 3300013308 Ga0157375_10015057 Ga0157375_100150574 1073
50 iso_pu_bacteria 2919437846 2919441255 1073
51 3300009094 Ga0111539_10004577 Ga0111539_100045772 1075
52 3300014326 Ga0157380_10016202 Ga0157380_100162021 1076
53 3300032002 Ga0307416_100006073 Ga0307416_1000060733 1076
54 3300044712 Ga0453684_0007118 Ga0453684_0007118_1891_5382 1076
55 3300045051 Ga0451576_0003001 Ga0451576_0003001_20273_23764 1076
56 3300009545 Ga0105237_10002424 Ga0105237_100024243 1077
57 3300044712 Ga0453684_0002787 Ga0453684_0002787_2004_5318 1077
58 3300053156 Ga0500622_0000004 Ga0500622_0000004_524666_527968 1077
59 3300009094 Ga0111539_10005518 Ga0111539_100055189 1078
60 3300030521 Ga0307511_10000114 Ga0307511_1000011422 1078
61 iso_pu_bacteria 2910245624 2910249299 1078
62 3300003320 rootH2_10006073 rootH2_1000607312 1079
63 3300005347 Ga0070668_100008231 Ga0070668_1000082314 1080
64 3300005353 Ga0070669_100001284 Ga0070669_1000012845 1080
65 3300009094 Ga0111539_10025776 Ga0111539_100257762 1080
66 3300009545 Ga0105237_10009821 Ga0105237_100098213 1080
67 3300009553 Ga0105249_10022491 Ga0105249_100224913 1080
68 3300010375 Ga0105239_10024987 Ga0105239_100249872 1080
69 3300013308 Ga0157375_10002891 Ga0157375_100028915 1080
70 3300025908 Ga0207643_10001653 Ga0207643_100016533 1080
71 3300025914 Ga0207671_10008578 Ga0207671_100085782 1080
72 3300025926 Ga0207659_10007073 Ga0207659_100070735 1080
73 3300026118 Ga0207675_100007367 Ga0207675_1000073675 1080
74 3300026118 Ga0207675_100002794 Ga0207675_1000027945 1081
75 3300005344 Ga0070661_100018930 Ga0070661_1000189303 1082
76 3300005535 Ga0070684_100001351 Ga0070684_10000135112 1082
77 3300005539 Ga0068853_100007899 Ga0068853_1000078993 1082
78 3300005564 Ga0070664_100024739 Ga0070664_1000247393 1082
79 3300005577 Ga0068857_100002525 Ga0068857_10000252510 1082
80 3300013100 Ga0157373_10033996 Ga0157373_100339961 1082
81 3300013102 Ga0157371_10002028 Ga0157371_1000202813 1082
82 3300013104 Ga0157370_10007093 Ga0157370_100070934 1082
83 3300013306 Ga0163162_10013040 Ga0163162_100130405 1082
84 3300025920 Ga0207649_10011219 Ga0207649_100112193 1082
85 3300026116 Ga0207674_10003748 Ga0207674_1000374812 1082
86 3300003316 rootH1_10006040 rootH1_100060408 1083
87 3300010375 Ga0105239_10000168 Ga0105239_1000016810 1083
88 3300046471 Ga0495650_0000057 Ga0495650_0000057_22661_25972 1083
89 3300046512 Ga0495610_0001605 Ga0495610_0001605_2672_5983 1083
90 iso_pu_bacteria 2599185184 2599477337 1083
91 3300002067 JGI24735J21928_10000001 JGI24735J21928_10000001281 1084
92 3300005563 Ga0068855_100016212 Ga0068855_1000162127 1084
93 3300005617 Ga0068859_100000727 Ga0068859_10000072718 1084
94 3300006931 Ga0097620_100000727 Ga0097620_10000072718 1084
95 3300009553 Ga0105249_10001308 Ga0105249_100013085 1084
96 3300033180 Ga0307510_10000416 Ga0307510_100004162 1084
97 iso_pu_bacteria 2932082852 2932084163 1084
98 3300002737 JGI25162J39368_1000024 JGI25162J39368_100002481 1085
99 3300005563 Ga0068855_100055456 Ga0068855_1000554562 1085
100 3300010375 Ga0105239_10000062 Ga0105239_1000006242 1085
101 3300025233 Ga0209437_100017 Ga0209437_10001781 1085
102 3300025914 Ga0207671_10001128 Ga0207671_1000112821 1085
103 3300032004 Ga0307414_10000077 Ga0307414_1000007710 1086
104 3300046810 Ga0495660_0010438 Ga0495660_0010438_1213_4533 1086
105 3300003354 JGI25160J50197_1000749 JGI25160J50197_10007497 1088
106 3300010375 Ga0105239_10000077 Ga0105239_1000007743 1088
107 3300025302 Ga0207426_1000170 Ga0207426_100017096 1088
108 3300025901 Ga0207688_10004272 Ga0207688_100042722 1088
109 3300025907 Ga0207645_10003246 Ga0207645_100032463 1088
110 3300025908 Ga0207643_10006409 Ga0207643_100064093 1088
111 3300025942 Ga0207689_10005563 Ga0207689_100055632 1088
112 3300026089 Ga0207648_10013998 Ga0207648_100139985 1088
113 3300026121 Ga0207683_10011592 Ga0207683_100115925 1088
114 3300032004 Ga0307414_10001117 Ga0307414_100011176 1089
115 3300005353 Ga0070669_100003810 Ga0070669_1000038104 1090
116 3300005354 Ga0070675_100007296 Ga0070675_1000072963 1090
117 3300005543 Ga0070672_100019181 Ga0070672_1000191812 1090
118 3300005577 Ga0068857_100030356 Ga0068857_1000303562 1090
119 3300005617 Ga0068859_100000919 Ga0068859_10000091916 1090
120 3300005719 Ga0068861_100007960 Ga0068861_1000079602 1090
121 3300005844 Ga0068862_100003196 Ga0068862_1000031967 1090
122 3300006931 Ga0097620_100000919 Ga0097620_10000091916 1090
123 3300009553 Ga0105249_10002884 Ga0105249_100028846 1090
124 3300014326 Ga0157380_10000317 Ga0157380_1000031715 1090
125 3300014745 Ga0157377_10003478 Ga0157377_100034782 1090
126 3300025926 Ga0207659_10005832 Ga0207659_100058323 1090
127 3300025960 Ga0207651_10030202 Ga0207651_100302021 1090
128 3300026118 Ga0207675_100004365 Ga0207675_1000043653 1090
129 3300050511 nmdc:mga08y16_5058_c1 nmdc:mga08y16_5058_c1_2112_5408 1090
130 3300006358 Ga0068871_100013732 Ga0068871_1000137322 1094
131 iso_pu_bacteria 2910245624 2910246018 1094
132 3300006844 Ga0075428_100018210 Ga0075428_1000182103 1095
133 3300033180 Ga0307510_10000492 Ga0307510_1000049227 1097
134 iso_pu_bacteria 2775506987 2776612988 1099
135 3300003316 rootH1_10002076 rootH1_1000207622 1101
136 3300003323 rootH1_10021053 rootH1_100210535 1101
137 3300003323 rootH1_10009140 rootH1_100091409 1102
138 3300033180 Ga0307510_10010692 Ga0307510_100106924 1103
139 3300005289 Ga0065704_10070795 Ga0065704_1007079512 1106
140 3300014497 Ga0182008_10000012 Ga0182008_10000012227 1106
141 3300053093 Ga0500651_0000233 Ga0500651_0000233_21658_24978 1106
142 iso_pu_bacteria 2775506987 2776613787 1113
143 2162886007 SwRhRL2b_contig_301064 SwRhRL2b_0634.00007080 1119
144 3300005288 Ga0065714_10002263 Ga0065714_1000226330 1119
145 3300005288 Ga0065714_10002864 Ga0065714_100028646 1119
146 3300005289 Ga0065704_10000229 Ga0065704_1000022945 1119
147 3300013100 Ga0157373_10000406 Ga0157373_100004061 1119
148 3300013102 Ga0157371_10002461 Ga0157371_100024618 1119
149 3300031911 Ga0307412_10000045 Ga0307412_10000045108 1119
150 3300032004 Ga0307414_10000867 Ga0307414_100008672 1119

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07593

UnbV_ASPIC

ASPIC and UnbV

573

640

0.97

PF13517

FG-GAP_3

FG-GAP-like repeat

117

179

0.95

PF13517

FG-GAP_3

FG-GAP-like repeat

297

360

0.95

PF13517

FG-GAP_3

FG-GAP-like repeat

390

442

0.91

PF13517

FG-GAP_3

FG-GAP-like repeat

187

238

0.89

PF13517

FG-GAP_3

FG-GAP-like repeat

868

930

0.85

PF13517

FG-GAP_3

FG-GAP-like repeat

753

816

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
7fik-assembly1.cif.gz_H the cryo-em structure of the cr subunit from x. laevis npc 0.6754 664 1079
6lk8-assembly1.cif.gz_h structure of xenopus laevis cytoplasmic ring subunit. 0.6733 655 1079
3bg0-assembly1.cif.gz_A architecture of a coat for the nuclear pore membrane 0.6729 681 1079
6lk8-assembly1.cif.gz_H structure of xenopus laevis cytoplasmic ring subunit. 0.6666 651 1079
5y31-assembly2.cif.gz_D crystal structure of human lgi1-adam22 complex 0.662 640 1114
ID Description Score Start End Superfamily
af_A1XF92_202_447_2.130.10.130 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;Integrin alpha, N-terminal 0.7541 79 335 2.130.10.130
af_A0A1D8PQF7_735_932_2.130.10.10 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.7138 644 877 2.130.10.10
af_K7LW89_2_224_2.130.10.10 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.7081 662 867 2.130.10.10
af_B6TSA2_226_370_2.130.10.10 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.7072 776 909 2.130.10.10
af_Q86K39_2_208_2.130.10.10 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.6823 669 877 2.130.10.10
ID Description Score Start End GO Terms
AF-A0A6J4RME0-F1-model_v4 ASPIC/UnbV domain-containing protein 0.9934 671 1085
AF-A0A4Q6AGZ3-F1-model_v4 VCBS repeat-containing protein 0.9918 648 1100
AF-A0A1G7RWB0-F1-model_v4 Repeat domain-containing protein 0.9891 43 1119
AF-A0A6J4RME0-F1-model_v4 ASPIC/UnbV domain-containing protein 0.9886 671 1085
AF-A0A4Q6AGZ3-F1-model_v4 VCBS repeat-containing protein 0.9874 648 1100

Feature Viewer

pLDDT pTM Quality
90.47 0.91 High
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Predicted Structure (AlphaFold2)

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