F206162

General Info

Members Datasets Scaffolds Average Seq Length
149 110 298 412

Family's Representative Sequence

Representative Sequence 3300025904|Ga0207647_10025582|Ga0207647_100255823
Length 448
Sequence MAVPSYRLVAMLRLGKLMFYNHLLWPLHIAGAFNFMQQDELIPHLFRTEYSKIVAVLYHSYCLKEIETAEDIASETFLKATEIWSIKGVPENPIAWLYTVAKNKLKDYFKHNNIFEKQIKGTLRISDIEPEHGFEFSKQNITDSQLAMIFSVCNPSNSTESQICLALQILCGFSVEEIANAFLTKSETVKKRLHRARVNLRNGNFQISTLGEVKIKERLAAVLKTLYLLFNEGYFSKTSSQLIRKDLCLEALRLTFILTENSITNTTETNALLALMCYQSSRLDARTDDNGEVVLLADQDRSLWDQELIDKGNHYLVTAYESNGFSKYHLEATIAYWHTTPTDTNKWDHILQLYNQLLLIEYSPITALNRTFAFAMVHGNEKGIQEAGRLGLNSNSQYYSLLAYLYSDTDMDKSIHYYEQAIKFTKSSNEIQAFTREIKRLSEKKNKS

Samples

Sample ID Description Type Environment
1 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
2 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
3 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
4 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
5 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
6 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
7 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
8 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
9 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
10 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
11 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
12 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
13 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
14 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
15 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
16 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
17 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
18 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
19 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
20 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
21 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
22 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
23 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
24 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
25 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
26 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
27 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
28 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
29 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
30 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
31 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
32 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
33 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
34 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
35 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
36 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
37 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
38 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
39 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
40 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
41 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
42 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
43 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
44 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
45 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
46 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
60 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
61 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
62 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
63 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
64 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
65 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
66 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
67 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
68 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
69 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
70 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
71 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
72 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
73 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
74 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
75 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
76 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
77 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
78 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
79 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
80 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
81 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
82 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
83 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
84 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
85 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
86 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
87 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
88 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
89 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
90 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
91 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
92 2511231000 Chryseobacterium populi CF314 Isolate Rhizosphere
93 2582581278 Chryseobacterium sp. CF365 Isolate Rhizosphere
94 2582581281 Chryseobacterium sp. CF284 Isolate Rhizosphere
95 2582581282 Chryseobacterium sp. CF299 Isolate Rhizosphere
96 2585428183 Chryseobacterium sp. YR485 Isolate Rhizosphere
97 2585428184 Chryseobacterium sp. YR480 Isolate Rhizosphere
98 2585428185 Chryseobacterium sp. YR459 Isolate Rhizosphere
99 2585428187 Chryseobacterium sp. YR460 Isolate Rhizosphere
100 2721755487 Sphingobacterium sp. B29 Isolate Rhizosphere
101 2765235839 Chryseobacterium indologenes AA5 Isolate Unclassified
102 2775506739 Chryseobacterium sp. 1335 Isolate Unclassified
103 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
104 2842903701 Olivibacter sp. R-72191 Isolate Unclassified
105 2919097161 Chryseobacterium ginsenosidimutans 1394 Isolate Rhizosphere
106 2919186247 Pedobacter africanus 2697 Isolate Rhizosphere
107 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
108 2939664404 Pedobacter africanus 2990 Isolate Rhizosphere
109 2945924605 Chryseobacterium ginsenosidimutans W1I9 Isolate Rhizosphere
110 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 87.25
Metatranscriptomes 0
Isolates 12.75

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 12.75
Nodule 0
Rhizoplane 1.34
Rhizosphere 65.1
Stem 0
Stem Tuber 0
Unclassified 7.38

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207647_10025582 3300025904 Bacteria 3875
2 JGI25154J39366_1000031 3300002738 Bacteria 190814
3 JGI25152J39213_1004490 3300002773 Bacteria 4381
4 JGI25150J39212_1000001 3300002774 Bacteria 1318726
5 JGI25151J46595_10000005 3300003187 Bacteria 431598
6 JGI25153J46596_10000040 3300003215 Bacteria 165523
7 JGI25153J46596_10006947 3300003215 Bacteria 5641
8 rootH2_10088774 3300003320 Bacteria 6203
9 rootL2_10156390 3300003322 Unclassified 4157
10 rootL2_10240288 3300003322 Bacteria 6125
11 rootH1_10076312 3300003323 Bacteria 7160
12 rootH1_10088947 3300003323 Bacteria 18169
13 Ga0055536_1000008 3300003781 Bacteria 335729
14 Ga0055530_10001010 3300003791 Bacteria 22503
15 Ga0065165_1019855 3300005262 Unclassified 2385
16 Ga0070682_100004714 3300005337 Bacteria 7577
17 Ga0070682_100012680 3300005337 Bacteria 4838
18 Ga0068853_100146562 3300005539 Unclassified 2122
19 Ga0070664_100181079 3300005564 Bacteria 1873
20 Ga0068857_100008739 3300005577 Bacteria 8772
21 Ga0068854_100014191 3300005578 Bacteria 5245
22 Ga0068852_100050729 3300005616 Bacteria 3557
23 Ga0068860_100000053 3300005843 Bacteria 207331
24 Ga0105244_10000080 3300009036 Bacteria 106764
25 Ga0105240_10002084 3300009093 Bacteria 32752
26 Ga0105240_10014126 3300009093 Bacteria 10912
27 Ga0105240_10022118 3300009093 Bacteria 8439
28 Ga0105240_10096591 3300009093 Unclassified 3601
29 Ga0105243_10028911 3300009148 Bacteria 4259
30 Ga0105237_10002102 3300009545 Bacteria 25150
31 Ga0105237_10004943 3300009545 Bacteria 15228
32 Ga0105237_10034267 3300009545 Bacteria 5142
33 Ga0105238_10110936 3300009551 Bacteria 2723
34 Ga0105238_10275504 3300009551 Unclassified 1663
35 Ga0105239_10005386 3300010375 Bacteria 15032
36 Ga0105239_10017805 3300010375 Bacteria 7860
37 Ga0105239_10025232 3300010375 Bacteria 6546
38 Ga0105239_10093026 3300010375 Bacteria 3329
39 Ga0157370_10000299 3300013104 Bacteria 62891
40 Ga0157370_10003167 3300013104 Bacteria 19469
41 Ga0157370_10028707 3300013104 Bacteria 5469
42 Ga0157370_10206484 3300013104 Bacteria 1821
43 Ga0157369_10072790 3300013105 Bacteria 3688
44 Ga0157374_10000003 3300013296 Bacteria 854471
45 Ga0157374_10078645 3300013296 Bacteria 3124
46 Ga0157374_10181020 3300013296 Unclassified 2059
47 Ga0163162_10003337 3300013306 Bacteria 15356
48 Ga0163162_10003453 3300013306 Bacteria 15095
49 Ga0157372_10001668 3300013307 Bacteria 24043
50 Ga0157375_10082582 3300013308 Bacteria 3255
51 Ga0182008_10001112 3300014497 Bacteria 18497
52 Ga0157376_10011589 3300014969 Bacteria 6508
53 Ga0157376_10153114 3300014969 Bacteria 2082
54 Ga0182006_1000134 3300015261 Bacteria 80259
55 Ga0182005_1000061 3300015265 Bacteria 98415
56 Ga0209436_102665 3300025208 Bacteria 5193
57 Ga0207425_1000002 3300025245 Bacteria 1362590
58 Ga0209646_1000009 3300025246 Bacteria 652154
59 Ga0209026_1000401 3300025250 Bacteria 38597
60 Ga0209129_1000002 3300025258 Bacteria 1359086
61 Ga0209676_1000042 3300025292 Bacteria 424130
62 Ga0209025_1000004 3300025294 Bacteria 1361782
63 Ga0209758_1000006 3300025297 Bacteria 1359562
64 Ga0209758_1009895 3300025297 Bacteria 5814
65 Ga0209050_1000035 3300025298 Bacteria 424005
66 Ga0209050_1001521 3300025298 Bacteria 24443
67 Ga0207426_1000175 3300025302 Bacteria 160332
68 Ga0207426_1002566 3300025302 Bacteria 11340
69 Ga0207655_1002729 3300025728 Bacteria 13793
70 Ga0207647_10014314 3300025904 Bacteria 5471
71 Ga0207695_10018240 3300025913 Bacteria 8121
72 Ga0207695_10019786 3300025913 Bacteria 7738
73 Ga0207695_10024965 3300025913 Bacteria 6706
74 Ga0207695_10076759 3300025913 Bacteria 3395
75 Ga0207695_10193908 3300025913 Unclassified 1948
76 Ga0207671_10004308 3300025914 Bacteria 13677
77 Ga0207671_10005862 3300025914 Bacteria 11157
78 Ga0207694_10297513 3300025924 Bacteria 1328
79 Ga0207709_10020114 3300025935 Bacteria 3762
80 Ga0207669_10176857 3300025937 Unclassified 1525
81 Ga0207689_10263354 3300025942 Bacteria 1426
82 Ga0207661_10169266 3300025944 Bacteria 1901
83 Ga0207679_10220809 3300025945 Unclassified 1594
84 Ga0207667_10000449 3300025949 Bacteria 55183
85 Ga0207674_10001880 3300026116 Bacteria 26745
86 Ga0207674_10174344 3300026116 Bacteria 2103
87 Ga0207698_10210390 3300026142 Unclassified 1749
88 Ga0268264_10000098 3300028381 Bacteria 229055
89 Ga0268264_10010391 3300028381 Bacteria 7695
90 Ga0307515_10000565 3300028794 Bacteria 87276
91 Ga0307511_10019409 3300030521 Bacteria 6468
92 Ga0316177_1201147 3300030731 Bacteria 11810
93 Ga0265327_10000009 3300031251 Bacteria 616360
94 Ga0265327_10035346 3300031251 Bacteria 2763
95 Ga0307412_10004273 3300031911 Bacteria 7967
96 Ga0307412_10037809 3300031911 Bacteria 3103
97 Ga0439465_0001536 3300041413 Bacteria 7508
98 Ga0439445_0000382 3300042004 Bacteria 8906
99 Ga0453684_0137504 3300044712 Unclassified 2922
100 Ga0466959_0000012 3300045049 Bacteria 168961
101 Ga0495627_018421 3300046453 Bacteria 2355
102 Ga0495596_0007174 3300046500 Bacteria 5045
103 Ga0495610_0000768 3300046512 Bacteria 30249
104 Ga0495632_0036325 3300046519 Bacteria 2507
105 Ga0495637_0010944 3300046520 Bacteria 4372
106 Ga0495643_0009508 3300046522 Bacteria 6040
107 Ga0495633_0003326 3300046558 Bacteria 10798
108 Ga0495625_0000685 3300046660 Bacteria 48249
109 Ga0495687_000006 3300047443 Bacteria 571936
110 Ga0495686_0000127 3300047472 Bacteria 156278
111 Ga0496102_0046842 3300048905 Bacteria 3928
112 Ga0496103_0042015 3300048906 Bacteria 2812
113 Ga0496116_0000012 3300048919 Bacteria 611365
114 Ga0496117_0000257 3300048920 Bacteria 99879
115 Ga0496117_0001265 3300048920 Bacteria 37550
116 Ga0496118_0000196 3300048921 Bacteria 106933
117 Ga0496119_0000002 3300048922 Bacteria 738385
118 Ga0496122_0000633 3300048925 Bacteria 71586
119 Ga0496122_0001151 3300048925 Bacteria 45371
120 Ga0496122_0005454 3300048925 Bacteria 15138
121 Ga0496123_0000775 3300048926 Bacteria 51737
122 Ga0496123_0009314 3300048926 Bacteria 8860
123 Ga0496124_0003172 3300048927 Bacteria 20323
124 Ga0496125_0012422 3300048928 Bacteria 8455
125 Ga0496125_0013016 3300048928 Bacteria 8211
126 Ga0496125_0127378 3300048928 Bacteria 1801
127 Ga0496126_0000114 3300048929 Bacteria 188605
128 Ga0501241_000017 3300049758 Bacteria 96324
129 Ga0501269_000592 3300049766 Bacteria 6571
130 Ga0501044_0088456 3300049823 Bacteria 3127
131 2511232975 2511231000 Bacteria 4488346
132 2585142675 2582581278 Bacteria 5296881
133 2585157549 2582581281 Bacteria 4487904
134 2585161947 2582581282 Bacteria 4495830
135 2588212918 2585428183 Bacteria 5166119
136 2588219516 2585428184 Bacteria 4978681
137 2588224177 2585428185 Bacteria 4969476
138 2588232687 2585428187 Bacteria 4629388
139 2722728856 2721755487 Bacteria 6357185
140 2765572293 2765235839 Bacteria 5314748
141 2775671713 2775506739 Bacteria 3855222
142 2819575382 2818991442 Bacteria 8318214
143 2842904359 2842903701 Bacteria 6986368
144 2919098847 2919097161 Bacteria 3860339
145 2919186806 2919186247 Bacteria 6244071
146 2929924586 2929921140 Bacteria 8649150
147 2939665925 2939664404 Bacteria 6364494
148 2945925788 2945924605 Bacteria 4296724
149 8003157041 8003151029 Bacteria 8187759
150 Ga0207647_10025582
151 JGI25154J39366_1000031
152 JGI25152J39213_1004490
153 JGI25150J39212_1000001
154 JGI25151J46595_10000005
155 JGI25153J46596_10000040
156 JGI25153J46596_10006947
157 rootH2_10088774
158 rootL2_10156390
159 rootL2_10240288
160 rootH1_10076312
161 rootH1_10088947
162 Ga0055536_1000008
163 Ga0055530_10001010
164 Ga0065165_1019855
165 Ga0070682_100004714
166 Ga0070682_100012680
167 Ga0068853_100146562
168 Ga0070664_100181079
169 Ga0068857_100008739
170 Ga0068854_100014191
171 Ga0068852_100050729
172 Ga0068860_100000053
173 Ga0105244_10000080
174 Ga0105240_10002084
175 Ga0105240_10014126
176 Ga0105240_10022118
177 Ga0105240_10096591
178 Ga0105243_10028911
179 Ga0105237_10002102
180 Ga0105237_10004943
181 Ga0105237_10034267
182 Ga0105238_10110936
183 Ga0105238_10275504
184 Ga0105239_10005386
185 Ga0105239_10017805
186 Ga0105239_10025232
187 Ga0105239_10093026
188 Ga0157370_10000299
189 Ga0157370_10003167
190 Ga0157370_10028707
191 Ga0157370_10206484
192 Ga0157369_10072790
193 Ga0157374_10000003
194 Ga0157374_10078645
195 Ga0157374_10181020
196 Ga0163162_10003337
197 Ga0163162_10003453
198 Ga0157372_10001668
199 Ga0157375_10082582
200 Ga0182008_10001112
201 Ga0157376_10011589
202 Ga0157376_10153114
203 Ga0182006_1000134
204 Ga0182005_1000061
205 Ga0209436_102665
206 Ga0207425_1000002
207 Ga0209646_1000009
208 Ga0209026_1000401
209 Ga0209129_1000002
210 Ga0209676_1000042
211 Ga0209025_1000004
212 Ga0209758_1000006
213 Ga0209758_1009895
214 Ga0209050_1000035
215 Ga0209050_1001521
216 Ga0207426_1000175
217 Ga0207426_1002566
218 Ga0207655_1002729
219 Ga0207647_10014314
220 Ga0207695_10018240
221 Ga0207695_10019786
222 Ga0207695_10024965
223 Ga0207695_10076759
224 Ga0207695_10193908
225 Ga0207671_10004308
226 Ga0207671_10005862
227 Ga0207694_10297513
228 Ga0207709_10020114
229 Ga0207669_10176857
230 Ga0207689_10263354
231 Ga0207661_10169266
232 Ga0207679_10220809
233 Ga0207667_10000449
234 Ga0207674_10001880
235 Ga0207674_10174344
236 Ga0207698_10210390
237 Ga0268264_10000098
238 Ga0268264_10010391
239 Ga0307515_10000565
240 Ga0307511_10019409
241 Ga0316177_1201147
242 Ga0265327_10000009
243 Ga0265327_10035346
244 Ga0307412_10004273
245 Ga0307412_10037809
246 Ga0439465_0001536
247 Ga0439445_0000382
248 Ga0453684_0137504
249 Ga0466959_0000012
250 Ga0495627_018421
251 Ga0495596_0007174
252 Ga0495610_0000768
253 Ga0495632_0036325
254 Ga0495637_0010944
255 Ga0495643_0009508
256 Ga0495633_0003326
257 Ga0495625_0000685
258 Ga0495687_000006
259 Ga0495686_0000127
260 Ga0496102_0046842
261 Ga0496103_0042015
262 Ga0496116_0000012
263 Ga0496117_0000257
264 Ga0496117_0001265
265 Ga0496118_0000196
266 Ga0496119_0000002
267 Ga0496122_0000633
268 Ga0496122_0001151
269 Ga0496122_0005454
270 Ga0496123_0000775
271 Ga0496123_0009314
272 Ga0496124_0003172
273 Ga0496125_0012422
274 Ga0496125_0013016
275 Ga0496125_0127378
276 Ga0496126_0000114
277 Ga0501241_000017
278 Ga0501269_000592
279 Ga0501044_0088456
280 2511232975
281 2585142675
282 2585157549
283 2585161947
284 2588212918
285 2588219516
286 2588224177
287 2588232687
288 2722728856
289 2765572293
290 2775671713
291 2819575382
292 2842904359
293 2919098847
294 2919186806
295 2929924586
296 2939665925
297 2945925788
298 8003157041

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF20239

DUF6596

Family of unknown function (DUF6596)

218

320

0.97

PF04542

Sigma70_r2

Sigma-70 region 2

45

113

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
6jhe-assembly1.cif.gz_A crystal structure of bacillus subtilis sigw domain 4 in complexed with -35 element dna 0.9388 125 167
8j07-assembly1.cif.gz_u9 96nm repeat of human respiratory doublet microtubule and associated axonemal complexes 0.7904 289 408
2h27-assembly2.cif.gz_D crystal structure of escherichia coli sigmae region 4 bound to its-35 element dna 0.7845 107 167
5fgm-assembly1.cif.gz_A streptomyces coelicolor sigr region 4 0.7733 101 167
4cgw-assembly1.cif.gz_A second tpr of spaghetti (rpap3) bound to hsp90 peptide srmeevd 0.7673 309 390
ID Description Score Start End Superfamily
af_G3UYY4_963_1031_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.8574 336 403 1.25.40.10
af_Q337E1_42_200_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.8509 309 412 1.25.40.10
af_F4JS25_498_594_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.8199 332 406 1.25.40.10
af_G3UYY4_963_1031_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.8131 336 403 1.25.40.10
af_I1K2A6_8_142_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.8108 292 412 1.25.40.10
ID Description Score Start End GO Terms
AF-A0A645H4N5-F1-model_v4 DUF6596 domain-containing protein 0.9895 242 412
AF-A0A1G7SYF5-F1-model_v4 RNA polymerase sigma-70 factor, ECF subfamily 0.9831 113 407
AF-A0A3N7H1W2-F1-model_v4 RNA polymerase subunit sigma 0.9778 178 412
AF-A0A6I6N3D5-F1-model_v4 DUF6596 domain-containing protein 0.968 232 304
AF-A0A1G7SYF5-F1-model_v4 RNA polymerase sigma-70 factor, ECF subfamily 0.9668 113 407

Map