F205936

General Info

Members Datasets Scaffolds Average Seq Length
149 100 141 495

Family's Representative Sequence

Representative Sequence 3300009551|Ga0105238_10076249|Ga0105238_100762494
Length 569
Sequence MPLLQFGDYRPDVADYEGSSTKNILNVLPRGDGYGPFPGTSNYTAALPARCRGAFYALKSDGSVVVFAGTVDRLYQLDNTNFTWRPVSRPAAIASISNASPAVVTFTNAFAANDPVVFSTSGTLPAGLTAGTVYYVAASGLSSSAFAVSATPGGGLINTSSAGSGTHSVTSTYLALSASAQWRFAQTGNLVFATQANAPMQVFDLTSSVSFGDALGSPPQAAYIDVVGRFLVLSGLLSNPYRIQWSGLNSFNAAQSWTPGVNSSDFQDFPDGGIVRGVAGGEFGTIFQDQAIRRMTYVPGSPVVFQIDRIAQDKGLFAPYSIVRAGEFVFFYSSQGFQRIVPGGLPEQIGRERVDRAFRADLDRGNLQLLIGTCDPRSTRVFWAYKSSSGSAGLYDKVLGYDYVLDRFFQVGLSGEYLLGISQSGLTLENLDSISSSIDTMTLTLDAYATAVQPEIAQFGSDHKLSFFRGDNLEATLETAEQGTDGQRIYLNGFRPITDAASVFGSASFRETQQGTPTYLGEVALNARTGRCDLRQDTRYSRMRLRIPASTNWSFAAGVEPDVTQTGQQ

Samples

Sample ID Description Type Environment
1 2511231028 Bradyrhizobium sp. YR681 Isolate Rhizosphere
2 2513237141 Bradyrhizobium sp. TV2a.2 Isolate Nodule
3 2517572143 Bradyrhizobium elkanii USDA 76 Isolate Nodule
4 2824704595 Bradyrhizobium sp. HAMBI 2150 Isolate Unclassified
5 2876761206 Bradyrhizobium centrolobii BR 10245 Isolate Nodule
6 2908756301 Bradyrhizobium ivorense CI-41S Isolate Nodule
7 3005506211 Bradyrhizobium diazoefficiens SZCCT0449 Isolate Unclassified
8 3005710791 Bradyrhizobium genosp. B BDV5040 Isolate Unclassified
9 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
10 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
11 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
12 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
13 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
14 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
15 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
16 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
17 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
18 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
19 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
20 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
21 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
22 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
23 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
24 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
25 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
26 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
27 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
28 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
29 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
30 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
31 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
32 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
33 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
34 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
35 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
36 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
37 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
38 3300021320 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3 Metagenome Nodule
39 3300021321 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS1 Metagenome Nodule
40 3300021324 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS4 Metagenome Nodule
41 3300021327 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS2 Metagenome Nodule
42 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
43 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
44 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
45 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
46 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
63 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
64 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
65 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
66 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
67 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
68 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
69 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
70 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
71 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
72 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
73 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
74 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
75 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
76 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
77 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
78 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
79 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
80 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
81 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
82 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
83 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
84 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
85 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
86 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
87 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
88 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
89 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
90 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
91 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
92 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
93 3300053101 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 endosphere Metagenome Endosphere
94 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
95 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
96 3300053150 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 endosphere Metagenome Endosphere
97 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
98 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
99 3300053729 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 endosphere Metagenome Endosphere
100 3300053733 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 94.63
Metatranscriptomes 0
Isolates 5.37

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 12.75
Nodule 5.37
Rhizoplane 3.36
Rhizosphere 67.79
Stem 0
Stem Tuber 0
Unclassified 10.74

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10021857 3300001979 Bacteria 2211
2 rootH2_10012399 3300003320 Bacteria 46550
3 rootH1_10090549 3300003323 Bacteria 2312
4 JGI25160J50197_1000294 3300003354 Bacteria 35805
5 Ga0065165_1001555 3300005262 Bacteria 23837
6 Ga0068869_100018114 3300005334 Bacteria 4789
7 Ga0070680_100031330 3300005336 Bacteria 4275
8 Ga0070700_100006732 3300005441 Bacteria 6156
9 Ga0070681_10003591 3300005458 Bacteria 14540
10 Ga0070699_100030734 3300005518 Bacteria 4637
11 Ga0070679_100007749 3300005530 Bacteria 10056
12 Ga0068853_100068311 3300005539 Bacteria 3089
13 Ga0068855_100000616 3300005563 Bacteria 43769
14 Ga0068855_100043130 3300005563 Bacteria 5345
15 Ga0068855_100075373 3300005563 Bacteria 3917
16 Ga0068855_100113519 3300005563 Bacteria 3108
17 Ga0068855_100171705 3300005563 Bacteria 2455
18 Ga0068857_100049086 3300005577 Bacteria 3745
19 Ga0068854_100018335 3300005578 Bacteria 4698
20 Ga0068856_100000197 3300005614 Bacteria 63857
21 Ga0068856_100000486 3300005614 Bacteria 44040
22 Ga0068856_100000518 3300005614 Bacteria 42504
23 Ga0068856_100000952 3300005614 Bacteria 31012
24 Ga0068859_100068507 3300005617 Bacteria 3583
25 Ga0068858_100019362 3300005842 Bacteria 6365
26 Ga0068860_100133227 3300005843 Bacteria 2386
27 Ga0068862_100000464 3300005844 Bacteria 43716
28 Ga0075369_10022005 3300006186 Bacteria 2627
29 Ga0097620_100068511 3300006931 Bacteria 3583
30 Ga0099795_10020076 3300007788 Unclassified 2172
31 Ga0105240_10003986 3300009093 Bacteria 22774
32 Ga0105240_10160578 3300009093 Viruses 2670
33 Ga0105240_10195235 3300009093 Bacteria 2377
34 Ga0105247_10015520 3300009101 Bacteria 4561
35 Ga0105237_10004156 3300009545 Bacteria 16868
36 Ga0105237_10007838 3300009545 Bacteria 11645
37 Ga0105238_10001769 3300009551 Bacteria 21672
38 Ga0105238_10076249 3300009551 Unclassified 3344
39 Ga0105239_10004683 3300010375 Bacteria 16240
40 Ga0105239_10012873 3300010375 Bacteria 9307
41 Ga0105239_10052136 3300010375 Bacteria 4486
42 Ga0157377_10000150 3300014745 Bacteria 43266
43 Ga0214544_1000055 3300021320 Bacteria 133217
44 Ga0214542_1003813 3300021321 Bacteria 30302
45 Ga0214545_1003421 3300021324 Bacteria 30302
46 Ga0214543_1000044 3300021327 Bacteria 158132
47 Ga0209677_101112 3300025253 Bacteria 12619
48 Ga0209233_1005505 3300025261 Bacteria 4194
49 Ga0209233_1013971 3300025261 Bacteria 2278
50 Ga0209455_1009341 3300025272 Bacteria 2585
51 Ga0207426_1000609 3300025302 Bacteria 46189
52 Ga0207426_1027347 3300025302 Bacteria 1900
53 Ga0207656_10000090 3300025321 Bacteria 33465
54 Ga0207710_10014921 3300025900 Bacteria 3280
55 Ga0207710_10045190 3300025900 Bacteria 1964
56 Ga0207707_10002317 3300025912 Bacteria 17170
57 Ga0207707_10022236 3300025912 Bacteria 5543
58 Ga0207695_10000240 3300025913 Bacteria 143196
59 Ga0207695_10008983 3300025913 Bacteria 12438
60 Ga0207695_10128143 3300025913 Unclassified 2498
61 Ga0207671_10001587 3300025914 Bacteria 25827
62 Ga0207671_10019331 3300025914 Bacteria 5210
63 Ga0207694_10000206 3300025924 Bacteria 58137
64 Ga0207670_10042388 3300025936 Viruses 2998
65 Ga0207689_10002163 3300025942 Bacteria 18488
66 Ga0207689_10048833 3300025942 Viruses 3491
67 Ga0207667_10000590 3300025949 Bacteria 47123
68 Ga0207667_10045401 3300025949 Bacteria 4654
69 Ga0207667_10049908 3300025949 Bacteria 4416
70 Ga0207667_10079695 3300025949 Viruses 3394
71 Ga0207639_10013282 3300026041 Bacteria 5759
72 Ga0207708_10004848 3300026075 Bacteria 9913
73 Ga0207702_10000026 3300026078 Bacteria 186067
74 Ga0207702_10000044 3300026078 Bacteria 149419
75 Ga0207702_10000528 3300026078 Bacteria 42681
76 Ga0207702_10001101 3300026078 Bacteria 27627
77 Ga0207702_10003205 3300026078 Bacteria 15107
78 Ga0207674_10029714 3300026116 Bacteria 5752
79 Ga0207698_10109402 3300026142 Bacteria 2312
80 Ga0268266_10157824 3300028379 Bacteria 2051
81 Ga0268265_10001330 3300028380 Bacteria 21128
82 Ga0268265_10001554 3300028380 Bacteria 19029
83 Ga0307517_10000756 3300028786 Bacteria 55661
84 Ga0307517_10024130 3300028786 Bacteria 7516
85 Ga0265339_10004747 3300031249 Bacteria 9210
86 Ga0307509_10001174 3300031507 Bacteria 44758
87 Ga0307509_10001198 3300031507 Bacteria 44147
88 Ga0307508_10017660 3300031616 Bacteria 6487
89 Ga0307508_10023349 3300031616 Bacteria 5616
90 Ga0307507_10122121 3300033179 Bacteria 2078
91 Ga0373931_0001212 3300035691 Bacteria 11027
92 Ga0373933_0000350 3300035724 Bacteria 29468
93 Ga0395900_0000708 3300037418 Bacteria 44416
94 Ga0395900_0000831 3300037418 Bacteria 40763
95 Ga0395900_0002279 3300037418 Bacteria 21317
96 Ga0395900_0004951 3300037418 Bacteria 14018
97 Ga0395900_0007740 3300037418 Bacteria 11084
98 Ga0395900_0035923 3300037418 Bacteria 5106
99 Ga0395900_0072056 3300037418 Bacteria 3553
100 Ga0395900_0110243 3300037418 Bacteria 2827
101 Ga0395900_0113320 3300037418 Bacteria 2783
102 Ga0395898_0000962 3300037466 Bacteria 45858
103 Ga0395898_0001021 3300037466 Bacteria 43637
104 Ga0395898_0012149 3300037466 Bacteria 8910
105 Ga0395898_0075311 3300037466 Viruses 3260
106 Ga0395898_0101578 3300037466 Bacteria 2761
107 Ga0395898_0174832 3300037466 Bacteria 2052
108 Ga0395905_0212394 3300037471 Bacteria 1813
109 Ga0466972_0003057 3300044658 Bacteria 8299
110 Ga0495664_0042785 3300046477 Bacteria 2684
111 Ga0495606_0001800 3300046507 Bacteria 27288
112 Ga0495643_0003189 3300046522 Bacteria 12183
113 Ga0495586_0007697 3300046535 Bacteria 5742
114 Ga0495645_0014980 3300046543 Bacteria 5509
115 Ga0495661_0009998 3300046665 Bacteria 6487
116 Ga0495599_0023934 3300046678 Bacteria 3819
117 Ga0495600_0069198 3300046809 Unclassified 2307
118 Ga0495604_0002216 3300047317 Bacteria 15549
119 Ga0495604_0035015 3300047317 Viruses 3967
120 Ga0495674_0001180 3300047319 Bacteria 25242
121 Ga0496105_0002405 3300048908 Bacteria 13551
122 Ga0496112_0000304 3300048915 Bacteria 31768
123 Ga0496113_0000208 3300048916 Bacteria 27346
124 Ga0496113_0201797 3300048916 Bacteria 1581
125 Ga0496114_0012034 3300048917 Bacteria 6921
126 Ga0496121_0004424 3300048924 Bacteria 18914
127 Ga0496126_0002258 3300048929 Bacteria 26576
128 Ga0496126_0028664 3300048929 Bacteria 5302
129 Ga0496126_0193327 3300048929 Bacteria 1722
130 nmdc:mga05p37_67249_c1 3300050507 Bacteria 4408
131 nmdc:mga0n895_18999_c1 3300050512 Bacteria 6376
132 nmdc:mga0sz30_28544_c1 3300050516 Bacteria 2297
133 Ga0500641_0039191 3300053096 Bacteria 1908
134 Ga0500553_000017 3300053101 Bacteria 40198
135 Ga0500607_043497 3300053121 Bacteria 2420
136 Ga0500559_0003702 3300053136 Bacteria 7452
137 Ga0500603_001124 3300053150 Bacteria 6244
138 Ga0500616_0000602 3300053153 Bacteria 43569
139 Ga0500627_0001478 3300053158 Bacteria 6586
140 Ga0500625_027217 3300053729 Bacteria 2712
141 Ga0500552_000708 3300053733 Viruses 3098

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005842 Ga0068858_100019362 Ga0068858_1000193628 451
2 3300003323 rootH1_10090549 rootH1_100905492 452
3 3300031616 Ga0307508_10023349 Ga0307508_100233496 452
4 3300025261 Ga0209233_1005505 Ga0209233_10055052 454
5 3300037418 Ga0395900_0110243 Ga0395900_0110243_791_2257 454
6 3300037466 Ga0395898_0101578 Ga0395898_0101578_800_2266 454
7 3300053153 Ga0500616_0000602 Ga0500616_0000602_23235_24947 456
8 3300037418 Ga0395900_0002279 Ga0395900_0002279_9512_11215 458
9 3300037466 Ga0395898_0000962 Ga0395898_0000962_10103_11806 458
10 3300037466 Ga0395898_0075311 Ga0395898_0075311_750_2231 458
11 3300025912 Ga0207707_10022236 Ga0207707_100222365 460
12 3300031507 Ga0307509_10001174 Ga0307509_100011749 460
13 3300005563 Ga0068855_100000616 Ga0068855_10000061669 468
14 3300010375 Ga0105239_10012873 Ga0105239_1001287314 468
15 3300025949 Ga0207667_10000590 Ga0207667_1000059078 468
16 iso_pu_bacteria 2511231028 2511396362 468
17 iso_pu_bacteria 2513237141 2513888345 468
18 iso_pu_bacteria 2517572143 2517894046 468
19 iso_pu_bacteria 2824704595 2824705661 468
20 iso_pu_bacteria 2876761206 2876766912 468
21 iso_pu_bacteria 2908756301 2908762167 468
22 iso_pu_bacteria 3005506211 3005512115 468
23 iso_pu_bacteria 3005710791 3005713059 468
24 3300050512 nmdc:mga0n895_18999_c1 nmdc:mga0n895_18999_c1_385_1845 469
25 3300003320 rootH2_10012399 rootH2_1001239916 470
26 3300007788 Ga0099795_10020076 Ga0099795_100200762 470
27 3300028786 Ga0307517_10024130 Ga0307517_100241305 470
28 3300046477 Ga0495664_0042785 Ga0495664_0042785_167_1630 470
29 3300046535 Ga0495586_0007697 Ga0495586_0007697_3323_4786 470
30 3300046543 Ga0495645_0014980 Ga0495645_0014980_927_2390 470
31 3300046678 Ga0495599_0023934 Ga0495599_0023934_1712_3175 470
32 3300047319 Ga0495674_0001180 Ga0495674_0001180_13394_14857 470
33 3300005336 Ga0070680_100031330 Ga0070680_1000313306 471
34 3300005441 Ga0070700_100006732 Ga0070700_1000067325 471
35 3300005563 Ga0068855_100171705 Ga0068855_1001717052 471
36 3300005844 Ga0068862_100000464 Ga0068862_10000046467 471
37 3300025936 Ga0207670_10042388 Ga0207670_100423882 471
38 3300025942 Ga0207689_10048833 Ga0207689_100488332 471
39 3300026075 Ga0207708_10004848 Ga0207708_1000484814 471
40 3300028380 Ga0268265_10001330 Ga0268265_100013309 471
41 3300028380 Ga0268265_10001554 Ga0268265_1000155430 471
42 3300035691 Ga0373931_0001212 Ga0373931_0001212_1290_2759 471
43 3300037418 Ga0395900_0000708 Ga0395900_0000708_38301_40013 471
44 3300037466 Ga0395898_0001021 Ga0395898_0001021_20375_22087 471
45 3300050507 nmdc:mga05p37_67249_c1 nmdc:mga05p37_67249_c1_2369_3829 471
46 3300053158 Ga0500627_0001478 Ga0500627_0001478_3384_4853 471
47 3300003354 JGI25160J50197_1000294 JGI25160J50197_100029453 472
48 3300005262 Ga0065165_1001555 Ga0065165_100155531 472
49 3300005334 Ga0068869_100018114 Ga0068869_1000181143 472
50 3300005458 Ga0070681_10003591 Ga0070681_1000359119 472
51 3300005518 Ga0070699_100030734 Ga0070699_1000307344 472
52 3300005530 Ga0070679_100007749 Ga0070679_10000774912 472
53 3300005563 Ga0068855_100043130 Ga0068855_1000431306 472
54 3300005563 Ga0068855_100075373 Ga0068855_1000753734 472
55 3300005563 Ga0068855_100113519 Ga0068855_1001135192 472
56 3300005578 Ga0068854_100018335 Ga0068854_1000183353 472
57 3300005614 Ga0068856_100000197 Ga0068856_10000019770 472
58 3300005614 Ga0068856_100000486 Ga0068856_1000004868 472
59 3300005614 Ga0068856_100000518 Ga0068856_1000005183 472
60 3300005614 Ga0068856_100000952 Ga0068856_10000095237 472
61 3300005617 Ga0068859_100068507 Ga0068859_1000685073 472
62 3300005843 Ga0068860_100133227 Ga0068860_1001332273 472
63 3300006186 Ga0075369_10022005 Ga0075369_100220052 472
64 3300006931 Ga0097620_100068511 Ga0097620_1000685113 472
65 3300009093 Ga0105240_10003986 Ga0105240_1000398629 472
66 3300009093 Ga0105240_10160578 Ga0105240_101605782 472
67 3300009101 Ga0105247_10015520 Ga0105247_100155201 472
68 3300009545 Ga0105237_10004156 Ga0105237_1000415620 472
69 3300009545 Ga0105237_10007838 Ga0105237_100078382 472
70 3300009551 Ga0105238_10076249 Ga0105238_100762494 472
71 3300010375 Ga0105239_10004683 Ga0105239_100046834 472
72 3300021320 Ga0214544_1000055 Ga0214544_1000055112 472
73 3300021321 Ga0214542_1003813 Ga0214542_100381319 472
74 3300021324 Ga0214545_1003421 Ga0214545_100342125 472
75 3300021327 Ga0214543_1000044 Ga0214543_100004425 472
76 3300025253 Ga0209677_101112 Ga0209677_10111220 472
77 3300025261 Ga0209233_1013971 Ga0209233_10139711 472
78 3300025272 Ga0209455_1009341 Ga0209455_10093413 472
79 3300025302 Ga0207426_1000609 Ga0207426_100060977 472
80 3300025302 Ga0207426_1027347 Ga0207426_10273471 472
81 3300025321 Ga0207656_10000090 Ga0207656_1000009041 472
82 3300025900 Ga0207710_10014921 Ga0207710_100149214 472
83 3300025900 Ga0207710_10045190 Ga0207710_100451902 472
84 3300025912 Ga0207707_10002317 Ga0207707_100023176 472
85 3300025913 Ga0207695_10000240 Ga0207695_10000240152 472
86 3300025913 Ga0207695_10128143 Ga0207695_101281433 472
87 3300025914 Ga0207671_10001587 Ga0207671_1000158721 472
88 3300025914 Ga0207671_10019331 Ga0207671_100193316 472
89 3300025942 Ga0207689_10002163 Ga0207689_1000216322 472
90 3300025949 Ga0207667_10045401 Ga0207667_100454014 472
91 3300025949 Ga0207667_10049908 Ga0207667_100499083 472
92 3300025949 Ga0207667_10079695 Ga0207667_100796954 472
93 3300026078 Ga0207702_10000044 Ga0207702_1000004499 472
94 3300026078 Ga0207702_10000528 Ga0207702_1000052821 472
95 3300026078 Ga0207702_10001101 Ga0207702_1000110130 472
96 3300026078 Ga0207702_10003205 Ga0207702_100032053 472
97 3300028379 Ga0268266_10157824 Ga0268266_101578241 472
98 3300028786 Ga0307517_10000756 Ga0307517_1000075646 472
99 3300031249 Ga0265339_10004747 Ga0265339_100047474 472
100 3300031507 Ga0307509_10001198 Ga0307509_1000119812 472
101 3300031616 Ga0307508_10017660 Ga0307508_100176605 472
102 3300033179 Ga0307507_10122121 Ga0307507_101221212 472
103 3300035724 Ga0373933_0000350 Ga0373933_0000350_18471_19943 472
104 3300037418 Ga0395900_0000831 Ga0395900_0000831_10464_11930 472
105 3300037418 Ga0395900_0004951 Ga0395900_0004951_8331_9794 472
106 3300037418 Ga0395900_0007740 Ga0395900_0007740_3576_5042 472
107 3300037418 Ga0395900_0035923 Ga0395900_0035923_1549_3030 472
108 3300037418 Ga0395900_0072056 Ga0395900_0072056_1394_2857 472
109 3300037418 Ga0395900_0113320 Ga0395900_0113320_980_2446 472
110 3300037466 Ga0395898_0012149 Ga0395898_0012149_4229_5692 472
111 3300037466 Ga0395898_0174832 Ga0395898_0174832_496_1962 472
112 3300037471 Ga0395905_0212394 Ga0395905_0212394_221_1687 472
113 3300044658 Ga0466972_0003057 Ga0466972_0003057_4940_6427 472
114 3300046507 Ga0495606_0001800 Ga0495606_0001800_15734_17200 472
115 3300046522 Ga0495643_0003189 Ga0495643_0003189_759_2225 472
116 3300046809 Ga0495600_0069198 Ga0495600_0069198_324_2030 472
117 3300047317 Ga0495604_0002216 Ga0495604_0002216_9530_10996 472
118 3300047317 Ga0495604_0035015 Ga0495604_0035015_706_2412 472
119 3300048908 Ga0496105_0002405 Ga0496105_0002405_7747_9210 472
120 3300048915 Ga0496112_0000304 Ga0496112_0000304_18571_20034 472
121 3300048916 Ga0496113_0000208 Ga0496113_0000208_13371_14834 472
122 3300048916 Ga0496113_0201797 Ga0496113_0201797_92_1558 472
123 3300048917 Ga0496114_0012034 Ga0496114_0012034_1565_3031 472
124 3300048924 Ga0496121_0004424 Ga0496121_0004424_12767_14239 472
125 3300048929 Ga0496126_0002258 Ga0496126_0002258_616_2094 472
126 3300048929 Ga0496126_0028664 Ga0496126_0028664_1644_3116 472
127 3300050516 nmdc:mga0sz30_28544_c1 nmdc:mga0sz30_28544_c1_333_1805 472
128 3300053096 Ga0500641_0039191 Ga0500641_0039191_85_1638 472
129 3300053101 Ga0500553_000017 Ga0500553_000017_19738_21447 472
130 3300053121 Ga0500607_043497 Ga0500607_043497_272_1744 472
131 3300053136 Ga0500559_0003702 Ga0500559_0003702_1370_2842 472
132 3300053150 Ga0500603_001124 Ga0500603_001124_999_2708 472
133 3300053729 Ga0500625_027217 Ga0500625_027217_729_2201 472
134 3300053733 Ga0500552_000708 Ga0500552_000708_453_2162 472
135 3300001979 JGI24740J21852_10021857 JGI24740J21852_100218571 473
136 3300005539 Ga0068853_100068311 Ga0068853_1000683112 473
137 3300005577 Ga0068857_100049086 Ga0068857_1000490865 473
138 3300009093 Ga0105240_10195235 Ga0105240_101952352 473
139 3300009551 Ga0105238_10001769 Ga0105238_100017697 473
140 3300010375 Ga0105239_10052136 Ga0105239_100521366 473
141 3300014745 Ga0157377_10000150 Ga0157377_1000015067 473
142 3300025913 Ga0207695_10008983 Ga0207695_1000898314 473
143 3300025924 Ga0207694_10000206 Ga0207694_1000020650 473
144 3300026041 Ga0207639_10013282 Ga0207639_100132822 473
145 3300026078 Ga0207702_10000026 Ga0207702_1000002654 473
146 3300026116 Ga0207674_10029714 Ga0207674_100297142 473
147 3300026142 Ga0207698_10109402 Ga0207698_101094023 473
148 3300046665 Ga0495661_0009998 Ga0495661_0009998_99_1799 473
149 3300048929 Ga0496126_0193327 Ga0496126_0193327_126_1592 473

Structural Annotation

Top 5 Hits

ID Description Score Start End
7z47-assembly1.cif.gz_G tail of bacteriophage su10 0.7462 35 473
7z4f-assembly1.cif.gz_G tail of phage su10 genome release intermediate 0.7347 34 473
7z4b-assembly1.cif.gz_DW bacteriophage su10 virion (c1) 0.716 20 473
7z47-assembly1.cif.gz_G tail of bacteriophage su10 0.6943 35 473
7z4b-assembly1.cif.gz_DW bacteriophage su10 virion (c1) 0.6875 20 473
ID Description Score Start End Superfamily
af_F4IGQ3_804_1099_3.90.70.10 Alpha Beta;Alpha-Beta Complex;Cathepsin B; Chain A;Cysteine proteinases 0.7796 53 87 3.90.70.10
af_Q9FE91_116_209_2.40.128.630 Mainly Beta;Beta Barrel;Lipocalin; 0.7013 133 232 2.40.128.630
af_E9AH24_340_548_2.130.10.10 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.6923 48 261 2.130.10.10
af_Q4E3K5_328_579_2.130.10.10 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.6911 67 340 2.130.10.10
af_E9AH24_340_548_2.130.10.10 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.6784 48 261 2.130.10.10
ID Description Score Start End GO Terms
AF-A0A1C3XKY5-F1-model_v4 Uncharacterized protein 0.9858 380 471
AF-A0A3S0H0Y7-F1-model_v4 deleted 0.96 1 473
AF-A0A6P1B8H9-F1-model_v4 Uncharacterized protein 0.96 1 473
AF-A0A3S0H0Y7-F1-model_v4 deleted 0.958 1 473
AF-A0A6P1B8H9-F1-model_v4 Uncharacterized protein 0.958 1 473

Feature Viewer

pLDDT pTM Quality
85.14 0.85 High
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Predicted Structure (AlphaFold2)

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