F205841

General Info

Members Datasets Scaffolds Average Seq Length
149 126 298 255

Family's Representative Sequence

Representative Sequence 3300009098|Ga0105245_10379225|Ga0105245_103792252
Length 304
Sequence VNASFGSASARGFRGAGWGRFAWLVSENGPTGTFLERARYVRKRAHKEEIMTNGSDKTAIITGGSRGLGRNTAINLARRGVDILFTYNSNLAEAQTLVRDAEALGRKAAAFQLDAGSISLFDRFVNDVRNTIQGWGRDRFDYLVNNAGTSLHKPFDQTTEAEFDQIVNVHFKGVYFLTQKLLPLMKDGGRIVNISSGLARFSMPGTSAYGAAKGAIEVLTRYLAKELGARGITANVAAPGAIETDFSGGMVRDNPEINKQVAAMTALGRVGVPDDIGPMIAALLSDDNRWVNGQRIEVSGGMAL

Samples

Sample ID Description Type Environment
1 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
2 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
3 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
4 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
5 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
6 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
7 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
8 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
9 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
10 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
11 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
12 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
13 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
14 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
15 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
16 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
17 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
18 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
19 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
20 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
21 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
22 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
23 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
24 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
25 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
26 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
27 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
28 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
29 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
30 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
31 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
32 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
33 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
34 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
35 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
36 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
37 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
38 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
39 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
40 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
41 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
42 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
43 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
44 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
45 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
57 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
58 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
62 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
63 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
64 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
65 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
66 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
67 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
68 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
69 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
70 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
71 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
72 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
73 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
74 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
75 3300042184 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627D_E14_080116_2630 Metagenome Rhizosphere
76 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
77 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
78 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
79 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
80 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
81 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
82 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
83 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
84 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
85 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
86 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
87 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
88 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
89 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
90 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
91 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
92 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
93 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
94 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
95 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
96 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
97 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
98 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
99 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
100 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
101 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
102 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
103 2510917028 Rhizobium sp. CF122 Isolate Rhizosphere
104 2513237138 Rhizobium favelukesii OR191 Isolate Nodule
105 2534681796 Rhizobium grahamii CCGE 502 Isolate Nodule
106 2582581294 Rhizobium sp. CF394 Isolate Rhizosphere
107 2582581867 Rhizobium sp. OV201 Isolate Rhizosphere
108 2585427590 Rhizobium sp. CF048 Isolate Rhizosphere
109 2585428187 Chryseobacterium sp. YR460 Isolate Rhizosphere
110 2593339239 Luteibacter sp. UNCMF331Sha3.1 Isolate Unclassified
111 2738541273 Elizabethkingia sp. YR214 Isolate Unclassified
112 2738543014 Elizabethkingia sp. YR191 Isolate Unclassified
113 2775506739 Chryseobacterium sp. 1335 Isolate Unclassified
114 2786546940 Opitutaceae bacterium EW11 Isolate Unclassified
115 2885312484 Mesorhizobium sp. M9A.F.Ca.ET.002.03.1.2 Isolate Nodule
116 2894414249 Luteimonas sp. LNNU 24178 Isolate Rhizosphere
117 2895498888 Pseudoxanthomonas sp. SGD-10 Isolate Rhizosphere
118 2895511927 Pseudoxanthomonas sp. SGD-5-1 Isolate Rhizosphere
119 2895522137 Pseudoxanthomonas sp. SGNA-20 Isolate Rhizosphere
120 2895525241 Pseudoxanthomonas sp. SGT-18 Isolate Rhizosphere
121 2919097161 Chryseobacterium ginsenosidimutans 1394 Isolate Rhizosphere
122 2919404418 Luteibacter sp. 3190 Isolate Unclassified
123 2995463766 Streptacidiphilus fuscans NEAU-YB345 Isolate Unclassified
124 3005409236 Rhizobium sp. P32RR-XVIII Isolate Rhizosphere
125 8005258706 Rhizobium sp. R693 Isolate Nodule
126 8005542996 Rhizobium grahamii CCGM3 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 81.88
Metatranscriptomes 2.01
Isolates 16.11

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 16.78
Nodule 2.68
Rhizoplane 0.67
Rhizosphere 63.09
Stem 0
Stem Tuber 0
Unclassified 3.36

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0105245_10379225 3300009098 Unclassified 1408
2 JGI24751J29686_10000063 3300002459 Bacteria 60668
3 Ga0006562J51391_1043293 3300003578 Bacteria 5852
4 Ga0006562J51391_1043294 3300003578 Bacteria 4440
5 Ga0055535_1000102 3300003761 Bacteria 92203
6 Ga0065165_1040543 3300005262 Bacteria 1388
7 Ga0070670_100000245 3300005331 Bacteria 48841
8 Ga0070687_100363371 3300005343 Bacteria 938
9 Ga0070671_100001334 3300005355 Bacteria 18520
10 Ga0070667_100265335 3300005367 Bacteria 1538
11 Ga0070708_100162004 3300005445 Unclassified 2085
12 Ga0070678_100321474 3300005456 Bacteria 1321
13 Ga0070707_100001762 3300005468 Bacteria 20850
14 Ga0070698_100021313 3300005471 Bacteria 6789
15 Ga0070679_100052583 3300005530 Bacteria 4056
16 Ga0070697_100051316 3300005536 Unclassified 3351
17 Ga0068864_100000109 3300005618 Bacteria 80156
18 Ga0068860_100002861 3300005843 Bacteria 17917
19 Ga0068860_100308890 3300005843 Bacteria 1550
20 Ga0068862_100341755 3300005844 Bacteria 1386
21 Ga0075365_10010696 3300006038 Bacteria 5359
22 Ga0075368_10019194 3300006042 Bacteria 2579
23 Ga0075363_100153665 3300006048 Bacteria 1300
24 Ga0070716_100377646 3300006173 Bacteria 1012
25 Ga0075362_10141471 3300006177 Bacteria 1150
26 Ga0075367_10000414 3300006178 Bacteria 15782
27 Ga0075367_10001194 3300006178 Bacteria 10904
28 Ga0075367_10135516 3300006178 Bacteria 1523
29 Ga0075369_10004616 3300006186 Bacteria 5109
30 Ga0105251_10086614 3300009011 Bacteria 1442
31 Ga0105240_10049408 3300009093 Bacteria 5309
32 Ga0105241_10193796 3300009174 Bacteria 1693
33 Ga0105248_10078268 3300009177 Bacteria 3717
34 Ga0105237_10577109 3300009545 Bacteria 1131
35 Ga0105238_10307889 3300009551 Bacteria 1569
36 Ga0105249_10008336 3300009553 Bacteria 9025
37 Ga0105249_10126881 3300009553 Bacteria 2431
38 Ga0105239_10146211 3300010375 Bacteria 2636
39 Ga0105239_10280871 3300010375 Bacteria 1874
40 Ga0157378_10116129 3300013297 Bacteria 2460
41 Ga0163162_10021175 3300013306 Bacteria 6397
42 Ga0163162_10156107 3300013306 Bacteria 2402
43 Ga0163161_10020840 3300017792 Bacteria 4603
44 Ga0213874_10015209 3300021377 Bacteria 2026
45 Ga0213875_10003121 3300021388 Bacteria 9543
46 Ga0213871_10043610 3300021441 Bacteria 1211
47 Ga0209564_1012543 3300025295 Bacteria 3685
48 Ga0209758_1005158 3300025297 Bacteria 10285
49 Ga0209758_1045112 3300025297 Bacteria 1603
50 Ga0209256_1010790 3300025299 Bacteria 3762
51 Ga0209256_1024990 3300025299 Bacteria 1749
52 Ga0209051_1002708 3300025303 Bacteria 12325
53 Ga0209257_1043781 3300025304 Bacteria 1310
54 Ga0207654_10140395 3300025911 Bacteria 1540
55 Ga0207652_10307393 3300025921 Bacteria 1431
56 Ga0207646_10002684 3300025922 Bacteria 20860
57 Ga0207650_10000039 3300025925 Bacteria 204737
58 Ga0207687_10002644 3300025927 Bacteria 12132
59 Ga0207687_10337061 3300025927 Unclassified 1225
60 Ga0207644_10000988 3300025931 Bacteria 18163
61 Ga0207690_10032007 3300025932 Bacteria 3371
62 Ga0207665_10350037 3300025939 Unclassified 1115
63 Ga0207711_10015473 3300025941 Bacteria 6331
64 Ga0207712_10224223 3300025961 Bacteria 1504
65 Ga0207676_10000035 3300026095 Bacteria 204737
66 Ga0209371_1000308 3300027312 Bacteria 54275
67 Ga0209813_10000288 3300027866 Bacteria 14115
68 Ga0209813_10001092 3300027866 Bacteria 6074
69 Ga0268266_10185884 3300028379 Bacteria 1895
70 Ga0268266_10743904 3300028379 Bacteria 946
71 Ga0268265_10041398 3300028380 Bacteria 3409
72 Ga0268264_10000853 3300028381 Bacteria 32524
73 Ga0268264_10252123 3300028381 Bacteria 1640
74 Ga0265760_10010164 3300031090 Bacteria 2684
75 Ga0265340_10067881 3300031247 Bacteria 1694
76 Ga0265339_10014439 3300031249 Bacteria 4758
77 Ga0265314_10006540 3300031711 Bacteria 10286
78 Ga0307516_10007630 3300031730 Bacteria 12393
79 Ga0316582_0009717 3300036647 Bacteria 5231
80 Ga0395905_0225347 3300037471 Bacteria 1754
81 Ga0436364_1499254 3300037853 Bacteria 33218
82 Ga0436365_0652922 3300039437 Bacteria 5999
83 Ga0436360_0689621 3300039438 Bacteria 1967
84 Ga0436360_0872038 3300039438 Bacteria 6743
85 Ga0436361_0525718 3300039447 Bacteria 2838
86 Ga0436361_0814254 3300039447 Bacteria 5377
87 Ga0436363_0807545 3300039450 Bacteria 3811
88 Ga0436362_0862993 3300039453 Bacteria 5199
89 Ga0436362_1140117 3300039453 Bacteria 2835
90 Ga0439465_0041493 3300041413 Bacteria 1490
91 Ga0450908_000165 3300042184 Bacteria 13855
92 Ga0466959_0309653 3300045049 Bacteria 1081
93 Ga0495650_0012790 3300046471 Bacteria 4491
94 Ga0495632_0000011 3300046519 Bacteria 266804
95 Ga0495632_0012190 3300046519 Bacteria 4968
96 Ga0495633_0003686 3300046558 Bacteria 10111
97 Ga0495625_0098174 3300046660 Bacteria 2015
98 Ga0495674_0010246 3300047319 Bacteria 8876
99 Ga0496103_0007090 3300048906 Bacteria 6691
100 Ga0496116_0020169 3300048919 Bacteria 5072
101 Ga0496116_0174937 3300048919 Bacteria 1158
102 Ga0496117_0141467 3300048920 Bacteria 1440
103 Ga0496118_0008853 3300048921 Bacteria 10299
104 Ga0496121_0019292 3300048924 Bacteria 6824
105 Ga0496122_0001197 3300048925 Bacteria 44290
106 Ga0496122_0229949 3300048925 Bacteria 1055
107 Ga0496123_0154053 3300048926 Bacteria 1235
108 Ga0496124_0037886 3300048927 Bacteria 4189
109 Ga0501033_0081651 3300049570 Bacteria 2371
110 Ga0501033_0490355 3300049570 Bacteria 851
111 Ga0501038_0083831 3300049574 Bacteria 2683
112 Ga0501070_0078185 3300049586 Bacteria 2738
113 Ga0501072_0353657 3300049588 Bacteria 1166
114 Ga0501269_000264 3300049766 Bacteria 14919
115 Ga0501035_0001564 3300049822 Bacteria 23277
116 Ga0501044_0141036 3300049823 Bacteria 2398
117 Ga0501044_0268339 3300049823 Bacteria 1643
118 Ga0501044_0273426 3300049823 Bacteria 1624
119 nmdc:mga06z11_427_c1 3300050494 Bacteria 15796
120 nmdc:mga04h51_1329_c1 3300050495 Bacteria 5703
121 nmdc:mga04h51_3953_c1 3300050495 Bacteria 3649
122 Ga0495601_0008880 3300053077 Bacteria 5931
123 Ga0500643_048354 3300053087 Bacteria 1223
124 Ga0500595_019317 3300053119 Bacteria 2474
125 Ga0500637_0187732 3300053178 Bacteria 1182
126 2511183235 2510917028 Bacteria 6185411
127 2513865814 2513237138 Bacteria 7368160
128 2535515500 2534681796 Bacteria 7146037
129 2585205414 2582581294 Bacteria 6626667
130 2585400339 2582581867 Bacteria 7184437
131 2585823063 2585427590 Bacteria 6824633
132 2588233131 2585428187 Bacteria 4629388
133 2595451568 2593339239 Bacteria 4124669
134 2738701725 2738541273 Bacteria 4048577
135 2739256023 2738543014 Bacteria 4048139
136 2775672595 2775506739 Bacteria 3855222
137 2788437430 2786546940 Bacteria 6396474
138 2885318459 2885312484 Bacteria 6415165
139 2894415145 2894414249 Bacteria 4405451
140 2895499198 2895498888 Bacteria 5283788
141 2895512210 2895511927 Bacteria 6802080
142 2895522221 2895522137 Bacteria 3284416
143 2895527336 2895525241 Bacteria 3388457
144 2919099877 2919097161 Bacteria 3860339
145 2919404647 2919404418 Bacteria 4232372
146 2995466499 2995463766 Bacteria 8577691
147 3005412164 3005409236 Bacteria 7188837
148 8005260785 8005258706 Bacteria 6184835
149 8005544124 8005542996 Bacteria 7077758
150 Ga0105245_10379225
151 JGI24751J29686_10000063
152 Ga0006562J51391_1043293
153 Ga0006562J51391_1043294
154 Ga0055535_1000102
155 Ga0065165_1040543
156 Ga0070670_100000245
157 Ga0070687_100363371
158 Ga0070671_100001334
159 Ga0070667_100265335
160 Ga0070708_100162004
161 Ga0070678_100321474
162 Ga0070707_100001762
163 Ga0070698_100021313
164 Ga0070679_100052583
165 Ga0070697_100051316
166 Ga0068864_100000109
167 Ga0068860_100002861
168 Ga0068860_100308890
169 Ga0068862_100341755
170 Ga0075365_10010696
171 Ga0075368_10019194
172 Ga0075363_100153665
173 Ga0070716_100377646
174 Ga0075362_10141471
175 Ga0075367_10000414
176 Ga0075367_10001194
177 Ga0075367_10135516
178 Ga0075369_10004616
179 Ga0105251_10086614
180 Ga0105240_10049408
181 Ga0105241_10193796
182 Ga0105248_10078268
183 Ga0105237_10577109
184 Ga0105238_10307889
185 Ga0105249_10008336
186 Ga0105249_10126881
187 Ga0105239_10146211
188 Ga0105239_10280871
189 Ga0157378_10116129
190 Ga0163162_10021175
191 Ga0163162_10156107
192 Ga0163161_10020840
193 Ga0213874_10015209
194 Ga0213875_10003121
195 Ga0213871_10043610
196 Ga0209564_1012543
197 Ga0209758_1005158
198 Ga0209758_1045112
199 Ga0209256_1010790
200 Ga0209256_1024990
201 Ga0209051_1002708
202 Ga0209257_1043781
203 Ga0207654_10140395
204 Ga0207652_10307393
205 Ga0207646_10002684
206 Ga0207650_10000039
207 Ga0207687_10002644
208 Ga0207687_10337061
209 Ga0207644_10000988
210 Ga0207690_10032007
211 Ga0207665_10350037
212 Ga0207711_10015473
213 Ga0207712_10224223
214 Ga0207676_10000035
215 Ga0209371_1000308
216 Ga0209813_10000288
217 Ga0209813_10001092
218 Ga0268266_10185884
219 Ga0268266_10743904
220 Ga0268265_10041398
221 Ga0268264_10000853
222 Ga0268264_10252123
223 Ga0265760_10010164
224 Ga0265340_10067881
225 Ga0265339_10014439
226 Ga0265314_10006540
227 Ga0307516_10007630
228 Ga0316582_0009717
229 Ga0395905_0225347
230 Ga0436364_1499254
231 Ga0436365_0652922
232 Ga0436360_0689621
233 Ga0436360_0872038
234 Ga0436361_0525718
235 Ga0436361_0814254
236 Ga0436363_0807545
237 Ga0436362_0862993
238 Ga0436362_1140117
239 Ga0439465_0041493
240 Ga0450908_000165
241 Ga0466959_0309653
242 Ga0495650_0012790
243 Ga0495632_0000011
244 Ga0495632_0012190
245 Ga0495633_0003686
246 Ga0495625_0098174
247 Ga0495674_0010246
248 Ga0496103_0007090
249 Ga0496116_0020169
250 Ga0496116_0174937
251 Ga0496117_0141467
252 Ga0496118_0008853
253 Ga0496121_0019292
254 Ga0496122_0001197
255 Ga0496122_0229949
256 Ga0496123_0154053
257 Ga0496124_0037886
258 Ga0501033_0081651
259 Ga0501033_0490355
260 Ga0501038_0083831
261 Ga0501070_0078185
262 Ga0501072_0353657
263 Ga0501269_000264
264 Ga0501035_0001564
265 Ga0501044_0141036
266 Ga0501044_0268339
267 Ga0501044_0273426
268 nmdc:mga06z11_427_c1
269 nmdc:mga04h51_1329_c1
270 nmdc:mga04h51_3953_c1
271 Ga0495601_0008880
272 Ga0500643_048354
273 Ga0500595_019317
274 Ga0500637_0187732
275 2511183235
276 2513865814
277 2535515500
278 2585205414
279 2585400339
280 2585823063
281 2588233131
282 2595451568
283 2738701725
284 2739256023
285 2775672595
286 2788437430
287 2885318459
288 2894415145
289 2895499198
290 2895512210
291 2895522221
292 2895527336
293 2919099877
294 2919404647
295 2995466499
296 3005412164
297 8005260785
298 8005544124

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00106

adh_short

short chain dehydrogenase

57

255

0.97

PF13561

adh_short_C2

Enoyl-(Acyl carrier protein) reductase

63

303

0.94

PF08659

KR

KR domain

57

238

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
4fgs-assembly1.cif.gz_D crystal structure of a probable dehydrogenase protein 0.958 2 247
3icc-assembly1.cif.gz_A crystal structure of a putative 3-oxoacyl-(acyl carrier protein) reductase from bacillus anthracis at 1.87 a resolution 0.9543 3 250
5tii-assembly2.cif.gz_E comprehensive analysis of a novel ketoreductase for pentangular polyphenol biosynthesis 0.9533 3 248
5tii-assembly1.cif.gz_A comprehensive analysis of a novel ketoreductase for pentangular polyphenol biosynthesis 0.9503 3 248
4mow-assembly1.cif.gz_C crystal structure of a putative glucose 1-dehydrogenase from burkholderia cenocepacia j2315 0.9497 3 247
ID Description Score Start End Superfamily
af_I1LJY0_35_302_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9386 3 247 3.40.50.720
3v2gA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9383 1 247 3.40.50.720
af_C6TLW3_3_253_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9364 3 247 3.40.50.720
af_Q9VWP2_2_241_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9329 2 247 3.40.50.720
4mowD00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9329 3 247 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A377XTH1-F1-model_v4 7-alpha-hydroxysteroid dehydrogenase (EC 1.1.1.100) 0.9923 44 182 GO:0004316
GO:0030497
AF-A0A7K2NVK2-F1-model_v4 SDR family NAD(P)-dependent oxidoreductase 0.9849 2 165
AF-A0A0P8XBT2-F1-model_v4 Short chain dehydrogenase family protein 0.9844 2 247
AF-A0A1N7S3R2-F1-model_v4 Short-chain dehydrogenase/reductase SDR 0.9837 3 155
AF-R9VI22-F1-model_v4 deleted 0.9835 2 250

Map