F205647

General Info

Members Datasets Scaffolds Average Seq Length
149 96 298 245

Family's Representative Sequence

Representative Sequence 3300006175|Ga0070712_100044215|Ga0070712_1000442153
Length 295
Sequence MPNYKLTVEYDGTRYRGWQTQKNTDRTVAAVLERAASALFEEPVRLTGAGRTDAGVHALAQVASFRAAKRLAGQEIRYGVNDALPSDVNVLSVEEADPAFHARHDAVSREYEYRISRVRTAFEKPFVWWVRDALDVHAMRRAAALFAGDHDFSSFCENPAGQTSTRVIVERCEVSESGEKILLSVAASHFLWKMIRRVTGTLVEIGRGNLAPEAVATLLARPSREPARWTAPPSGLFLARVVYGPPGSASNTPPTPASATGRAPNRARSPQGKTTPPFRGPHRPSRPGPPPRRRG

Samples

Sample ID Description Type Environment
1 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
4 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
7 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
8 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
9 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
10 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
11 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
12 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
13 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
14 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
15 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
16 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
17 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
18 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
19 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
20 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
21 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
22 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
23 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
24 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
25 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
26 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
27 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
28 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
29 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
30 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
31 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
32 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
33 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
34 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
35 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
36 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
37 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
38 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
39 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
40 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
41 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
42 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
43 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
44 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
45 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
46 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
47 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
48 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
71 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
72 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
73 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
74 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
75 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
76 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
77 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
78 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
79 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
80 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
81 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
82 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
83 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
84 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
85 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
86 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
87 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
88 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
89 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
90 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
91 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
92 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
93 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
94 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
95 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
96 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 3.36
Rhizosphere 96.64
Stem 0
Stem Tuber 0
Unclassified 6.71

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070712_100044215 3300006175 Bacteria 3070
2 Ga0070683_100246817 3300005329 Bacteria 1698
3 Ga0070690_100091585 3300005330 Bacteria 2003
4 Ga0070690_100113976 3300005330 Bacteria 1807
5 Ga0068869_100247375 3300005334 Bacteria 1423
6 Ga0070680_100015722 3300005336 Bacteria 5941
7 Ga0070682_100000136 3300005337 Bacteria 60325
8 Ga0068868_100001051 3300005338 Bacteria 18880
9 Ga0070692_10012078 3300005345 Bacteria 3985
10 Ga0070668_100386751 3300005347 Bacteria 1192
11 Ga0070675_100000023 3300005354 Bacteria 122380
12 Ga0070667_100339608 3300005367 Bacteria 1358
13 Ga0070713_100073683 3300005436 Bacteria 2891
14 Ga0070701_10000391 3300005438 Bacteria 14785
15 Ga0070700_100000163 3300005441 Bacteria 38495
16 Ga0070694_100266111 3300005444 Unclassified 1302
17 Ga0070708_100010595 3300005445 Bacteria 7476
18 Ga0070708_100025018 3300005445 Bacteria 5101
19 Ga0070708_100026114 3300005445 Bacteria 4997
20 Ga0070708_100052623 3300005445 Bacteria 3611
21 Ga0070662_100082050 3300005457 Bacteria 2403
22 Ga0070706_100001544 3300005467 Bacteria 24104
23 Ga0070706_100011107 3300005467 Bacteria 8363
24 Ga0070706_100107783 3300005467 Bacteria 2591
25 Ga0070706_100251852 3300005467 Bacteria 1649
26 Ga0070706_100365195 3300005467 Bacteria 1345
27 Ga0070707_100006794 3300005468 Bacteria 10592
28 Ga0070707_100009835 3300005468 Bacteria 8899
29 Ga0070707_100013467 3300005468 Bacteria 7652
30 Ga0070707_100072074 3300005468 Bacteria 3329
31 Ga0070707_100141937 3300005468 Bacteria 2337
32 Ga0070707_100379165 3300005468 Bacteria 1374
33 Ga0070707_100473962 3300005468 Bacteria 1213
34 Ga0070698_100000440 3300005471 Bacteria 44101
35 Ga0070698_100027094 3300005471 Bacteria 5960
36 Ga0070698_100168296 3300005471 Bacteria 2133
37 Ga0070698_100208814 3300005471 Unclassified 1888
38 Ga0070698_100731022 3300005471 Bacteria 932
39 Ga0070699_100000001 3300005518 Bacteria 910751
40 Ga0070699_100423000 3300005518 Bacteria 1206
41 Ga0070699_100467513 3300005518 Bacteria 1144
42 Ga0070697_100009790 3300005536 Bacteria 7475
43 Ga0070697_100143296 3300005536 Bacteria 2010
44 Ga0070696_100102123 3300005546 Bacteria 2056
45 Ga0070693_100075045 3300005547 Bacteria 2001
46 Ga0068857_101019460 3300005577 Bacteria 797
47 Ga0070702_100209202 3300005615 Bacteria 1297
48 Ga0081539_10027307 3300005985 Bacteria 3618
49 Ga0070717_10000406 3300006028 Bacteria 27593
50 Ga0075433_10012856 3300006852 Bacteria 6782
51 Ga0075434_100009296 3300006871 Bacteria 9158
52 Ga0075434_100250348 3300006871 Bacteria 1791
53 Ga0075434_100952226 3300006871 Bacteria 873
54 Ga0075429_100115251 3300006880 Bacteria 2349
55 Ga0075436_100000784 3300006914 Bacteria 21081
56 Ga0075435_100000228 3300007076 Bacteria 34304
57 Ga0075435_100012087 3300007076 Bacteria 6381
58 Ga0075435_100043960 3300007076 Bacteria 3578
59 Ga0075435_100198893 3300007076 Bacteria 1698
60 Ga0105244_10030198 3300009036 Bacteria 2885
61 Ga0105245_10000003 3300009098 Bacteria 488207
62 Ga0105245_10896567 3300009098 Bacteria 928
63 Ga0114129_10035326 3300009147 Bacteria 7061
64 Ga0114129_10076645 3300009147 Bacteria 4654
65 Ga0114129_10257193 3300009147 Bacteria 2342
66 Ga0114129_10443022 3300009147 Unclassified 1705
67 Ga0114129_10698046 3300009147 Bacteria 1304
68 Ga0114129_10800817 3300009147 Bacteria 1202
69 Ga0105243_10266974 3300009148 Unclassified 1535
70 Ga0105248_10070270 3300009177 Bacteria 3932
71 Ga0105239_10053061 3300010375 Bacteria 4448
72 Ga0105246_10028486 3300011119 Bacteria 3669
73 Ga0157378_10000751 3300013297 Bacteria 30334
74 Ga0157378_10001317 3300013297 Bacteria 22342
75 Ga0157378_10094296 3300013297 Bacteria 2725
76 Ga0157378_10121062 3300013297 Unclassified 2412
77 Ga0163162_10027010 3300013306 Bacteria 5677
78 Ga0163162_10137691 3300013306 Bacteria 2553
79 Ga0157375_10000047 3300013308 Bacteria 141526
80 Ga0157380_10006282 3300014326 Bacteria 8343
81 Ga0157380_10384473 3300014326 Unclassified 1326
82 Ga0157377_10000099 3300014745 Bacteria 61280
83 Ga0157379_10022727 3300014968 Bacteria 5557
84 Ga0157379_10275501 3300014968 Bacteria 1530
85 Ga0157376_10052010 3300014969 Bacteria 3405
86 Ga0157376_10279017 3300014969 Bacteria 1573
87 Ga0207684_10001696 3300025910 Bacteria 23393
88 Ga0207684_10005625 3300025910 Bacteria 11521
89 Ga0207684_10045756 3300025910 Bacteria 3711
90 Ga0207684_10297571 3300025910 Bacteria 1391
91 Ga0207660_10010593 3300025917 Bacteria 5989
92 Ga0207649_10116573 3300025920 Bacteria 1794
93 Ga0207646_10002952 3300025922 Bacteria 19689
94 Ga0207646_10010538 3300025922 Bacteria 9023
95 Ga0207646_10031096 3300025922 Bacteria 4834
96 Ga0207646_10252910 3300025922 Bacteria 1592
97 Ga0207659_10000009 3300025926 Bacteria 308304
98 Ga0207687_10000002 3300025927 Bacteria 975489
99 Ga0207687_10007103 3300025927 Bacteria 7381
100 Ga0207700_10052250 3300025928 Bacteria 3054
101 Ga0207644_10051257 3300025931 Bacteria 2962
102 Ga0207706_10210381 3300025933 Bacteria 1705
103 Ga0207665_10074140 3300025939 Bacteria 2329
104 Ga0207711_10591801 3300025941 Bacteria 1035
105 Ga0207689_10085893 3300025942 Bacteria 2586
106 Ga0207689_10132552 3300025942 Bacteria 2051
107 Ga0207661_10360143 3300025944 Bacteria 1314
108 Ga0207668_10379742 3300025972 Bacteria 1189
109 Ga0207658_10303658 3300025986 Bacteria 1376
110 Ga0207677_10000081 3300026023 Bacteria 78954
111 Ga0207703_10514623 3300026035 Bacteria 1125
112 Ga0207639_10251697 3300026041 Bacteria 1541
113 Ga0207678_10143285 3300026067 Bacteria 2039
114 Ga0207708_10000010 3300026075 Bacteria 227178
115 Ga0207641_10016740 3300026088 Bacteria 6004
116 Ga0207675_100562058 3300026118 Bacteria 1141
117 Ga0265334_10060164 3300028573 Bacteria 1434
118 Ga0307405_10384438 3300031731 Bacteria 1094
119 Ga0307416_100948138 3300032002 Bacteria 962
120 Ga0373941_0046972 3300035115 Bacteria 1358
121 Ga0373933_0254218 3300035724 Unclassified 1132
122 Ga0373937_0008116 3300036401 Bacteria 9113
123 Ga0453684_0324454 3300044712 Bacteria 1743
124 Ga0495580_0122623 3300046472 Bacteria 1804
125 Ga0495580_0250002 3300046472 Bacteria 1214
126 Ga0495662_0242139 3300046476 Bacteria 889
127 Ga0495630_0452651 3300046517 Bacteria 984
128 Ga0495623_0179242 3300046679 Unclassified 1232
129 Ga0495658_0145493 3300046683 Bacteria 1452
130 Ga0495679_003004 3300047446 Bacteria 8304
131 Ga0496100_0083147 3300048903 Bacteria 2166
132 Ga0496101_0023822 3300048904 Bacteria 4232
133 Ga0496102_0071573 3300048905 Bacteria 3184
134 Ga0496106_0004985 3300048909 Bacteria 9829
135 Ga0496107_0057985 3300048910 Bacteria 2799
136 Ga0501067_0227060 3300049583 Unclassified 1039
137 Ga0501075_0378641 3300049591 Unclassified 1079
138 nmdc:mga05p37_134674_c1 3300050507 Bacteria 2154
139 nmdc:mga05p37_368831_c1 3300050507 Bacteria 1685
140 nmdc:mga05p37_9855_c1 3300050507 Bacteria 11341
141 nmdc:mga09592_176954_c1 3300050508 Bacteria 1845
142 nmdc:mga0n895_4231_c1 3300050512 Bacteria 11736
143 nmdc:mga0rr50_118_c1 3300050513 Bacteria 43526
144 nmdc:mga0rr50_2355_c1 3300050513 Bacteria 10634
145 nmdc:mga08x19_292_c1 3300050514 Bacteria 36844
146 nmdc:mga0a205_18253_c1 3300050515 Bacteria 6591
147 nmdc:mga0a205_20663_c1 3300050515 Bacteria 6217
148 nmdc:mga0a205_332958_c1 3300050515 Bacteria 1388
149 Ga0495655_0000387 3300053083 Bacteria 7536
150 Ga0070712_100044215
151 Ga0070683_100246817
152 Ga0070690_100091585
153 Ga0070690_100113976
154 Ga0068869_100247375
155 Ga0070680_100015722
156 Ga0070682_100000136
157 Ga0068868_100001051
158 Ga0070692_10012078
159 Ga0070668_100386751
160 Ga0070675_100000023
161 Ga0070667_100339608
162 Ga0070713_100073683
163 Ga0070701_10000391
164 Ga0070700_100000163
165 Ga0070694_100266111
166 Ga0070708_100010595
167 Ga0070708_100025018
168 Ga0070708_100026114
169 Ga0070708_100052623
170 Ga0070662_100082050
171 Ga0070706_100001544
172 Ga0070706_100011107
173 Ga0070706_100107783
174 Ga0070706_100251852
175 Ga0070706_100365195
176 Ga0070707_100006794
177 Ga0070707_100009835
178 Ga0070707_100013467
179 Ga0070707_100072074
180 Ga0070707_100141937
181 Ga0070707_100379165
182 Ga0070707_100473962
183 Ga0070698_100000440
184 Ga0070698_100027094
185 Ga0070698_100168296
186 Ga0070698_100208814
187 Ga0070698_100731022
188 Ga0070699_100000001
189 Ga0070699_100423000
190 Ga0070699_100467513
191 Ga0070697_100009790
192 Ga0070697_100143296
193 Ga0070696_100102123
194 Ga0070693_100075045
195 Ga0068857_101019460
196 Ga0070702_100209202
197 Ga0081539_10027307
198 Ga0070717_10000406
199 Ga0075433_10012856
200 Ga0075434_100009296
201 Ga0075434_100250348
202 Ga0075434_100952226
203 Ga0075429_100115251
204 Ga0075436_100000784
205 Ga0075435_100000228
206 Ga0075435_100012087
207 Ga0075435_100043960
208 Ga0075435_100198893
209 Ga0105244_10030198
210 Ga0105245_10000003
211 Ga0105245_10896567
212 Ga0114129_10035326
213 Ga0114129_10076645
214 Ga0114129_10257193
215 Ga0114129_10443022
216 Ga0114129_10698046
217 Ga0114129_10800817
218 Ga0105243_10266974
219 Ga0105248_10070270
220 Ga0105239_10053061
221 Ga0105246_10028486
222 Ga0157378_10000751
223 Ga0157378_10001317
224 Ga0157378_10094296
225 Ga0157378_10121062
226 Ga0163162_10027010
227 Ga0163162_10137691
228 Ga0157375_10000047
229 Ga0157380_10006282
230 Ga0157380_10384473
231 Ga0157377_10000099
232 Ga0157379_10022727
233 Ga0157379_10275501
234 Ga0157376_10052010
235 Ga0157376_10279017
236 Ga0207684_10001696
237 Ga0207684_10005625
238 Ga0207684_10045756
239 Ga0207684_10297571
240 Ga0207660_10010593
241 Ga0207649_10116573
242 Ga0207646_10002952
243 Ga0207646_10010538
244 Ga0207646_10031096
245 Ga0207646_10252910
246 Ga0207659_10000009
247 Ga0207687_10000002
248 Ga0207687_10007103
249 Ga0207700_10052250
250 Ga0207644_10051257
251 Ga0207706_10210381
252 Ga0207665_10074140
253 Ga0207711_10591801
254 Ga0207689_10085893
255 Ga0207689_10132552
256 Ga0207661_10360143
257 Ga0207668_10379742
258 Ga0207658_10303658
259 Ga0207677_10000081
260 Ga0207703_10514623
261 Ga0207639_10251697
262 Ga0207678_10143285
263 Ga0207708_10000010
264 Ga0207641_10016740
265 Ga0207675_100562058
266 Ga0265334_10060164
267 Ga0307405_10384438
268 Ga0307416_100948138
269 Ga0373941_0046972
270 Ga0373933_0254218
271 Ga0373937_0008116
272 Ga0453684_0324454
273 Ga0495580_0122623
274 Ga0495580_0250002
275 Ga0495662_0242139
276 Ga0495630_0452651
277 Ga0495623_0179242
278 Ga0495658_0145493
279 Ga0495679_003004
280 Ga0496100_0083147
281 Ga0496101_0023822
282 Ga0496102_0071573
283 Ga0496106_0004985
284 Ga0496107_0057985
285 Ga0501067_0227060
286 Ga0501075_0378641
287 nmdc:mga05p37_134674_c1
288 nmdc:mga05p37_368831_c1
289 nmdc:mga05p37_9855_c1
290 nmdc:mga09592_176954_c1
291 nmdc:mga0n895_4231_c1
292 nmdc:mga0rr50_118_c1
293 nmdc:mga0rr50_2355_c1
294 nmdc:mga08x19_292_c1
295 nmdc:mga0a205_18253_c1
296 nmdc:mga0a205_20663_c1
297 nmdc:mga0a205_332958_c1
298 Ga0495655_0000387

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01416

PseudoU_synth_1

tRNA pseudouridine synthase

142

244

0.96

PF01416

PseudoU_synth_1

tRNA pseudouridine synthase

6

105

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
2nr0-assembly1.cif.gz_B crystal structure of pseudoudirinde synthase trua in complex with leucyl trna 0.9511 2 243
1vs3-assembly1.cif.gz_B crystal structure of the trna pseudouridine synthase trua from thermus thermophilus hb8 0.946 1 243
2nr0-assembly1.cif.gz_B crystal structure of pseudoudirinde synthase trua in complex with leucyl trna 0.9435 2 243
1vs3-assembly1.cif.gz_B crystal structure of the trna pseudouridine synthase trua from thermus thermophilus hb8 0.9422 1 243
2nre-assembly1.cif.gz_A-2 crystal structure of pseudoudirinde synthase trua in complex with leucyl trna 0.9385 2 243
ID Description Score Start End Superfamily
2nqpB01 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, N-terminal subdomain 0.9599 2 106 3.30.70.580
af_Q2FW37_106_241_3.30.70.660 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, C-terminal subdomain 0.9432 109 240 3.30.70.660
af_Q2FW37_1_104_3.30.70.580 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, N-terminal subdomain 0.9426 3 105 3.30.70.580
1vs3B01 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, N-terminal subdomain 0.9404 1 106 3.30.70.580
af_A0A1D6HBJ9_162_299_3.30.70.660 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, C-terminal subdomain 0.9397 107 236 3.30.70.660
ID Description Score Start End GO Terms
AF-A0A831WZM2-F1-model_v4 tRNA pseudouridine synthase (EC 5.4.99.12) 0.9832 37 237 GO:0003723
GO:0009982
GO:0031119
GO:0140098
AF-A0A1V5DX13-F1-model_v4 tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA pseudouridine(38-40) synthase) (tRNA pseudouridylate synthase I) (tRNA-uridine isomerase I) 0.9822 2 243 GO:0003723
GO:0031119
GO:0160147
AF-A0A1Q7ZFJ1-F1-model_v4 tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA pseudouridine(38-40) synthase) (tRNA pseudouridylate synthase I) (tRNA-uridine isomerase I) 0.9821 7 243 GO:0003723
GO:0031119
GO:0160147
AF-A0A1G0T0F7-F1-model_v4 tRNA pseudouridine synthase (EC 5.4.99.12) 0.9818 34 243 GO:0003723
GO:0031119
GO:0160147
AF-A0A2V7XV52-F1-model_v4 tRNA pseudouridine synthase (EC 5.4.99.12) 0.9818 99 243 GO:0003723
GO:0031119
GO:0160147

Map