F205320

General Info

Members Datasets Scaffolds Average Seq Length
149 132 129 444

Family's Representative Sequence

Representative Sequence 3300005445|Ga0070708_100000159|Ga0070708_10000015916
Length 479
Sequence VGAADFPDPDHRSDERVSKMAHVPASRDSRGSPPGSDPLCFVLMPFGRKPDGTGVSIDFDAVYNQLFAPAIRDAGLEPIRADEEMTGGVVHKPMFERLILCDYAVADLTLANANVFYELGVRHAVRPYSTVLVFASGTRLPFDLQLDRALPYSLSRAGGPADGEATRKRLADRLKAARDASVDSPVFQLVEGFPDIDRLKTDVFRDQVRYSEQWKRRLASDRAEGIDAVRSAERELGDLRDVEAGILIDLFLSYRAVRGYEEMVSLAERIPRPLAKTPMVREQLGLALNRLARRGEAERVLLDLVRERGPSSETYGILGRVYKDQWDEAEREGETFLSAGLLNKAIDAYVKGFEADWRDAYPGINAVTLMEIRDPPDPRREQLIPVVSYANERRLASGQADYWDHATRLELAVLARDEAGAREALAQALTMVREPWEAESTANNLALIQEARERRGDAVPWAEVIERELLRKAGRPGGA

Samples

Sample ID Description Type Environment
1 2509276021 Rhizobium leguminosarum bv. trifolii WSM597 Isolate Nodule
2 2516143018 Ensifer sp. BR816 Isolate Nodule
3 2562617112 Burkholderia sp. BT03 Isolate Rhizosphere
4 2711768613 Burkholderia sp. BT03 Isolate Rhizosphere
5 2718217882 Rhizobium sp. N741 Isolate Nodule
6 2718218009 Rhizobium sp. N561 Isolate Nodule
7 2718218363 Rhizobium sp. N113 Isolate Nodule
8 2718218366 Rhizobium sp. N621 Isolate Nodule
9 2721755514 Rhizobium sp. N6212 Isolate Nodule
10 2721755810 Rhizobium sp. N871 Isolate Nodule
11 2728369365 Rhizobium sp. N1341 Isolate Nodule
12 2739367664 Novosphingobium sp. GV002 Isolate Unclassified
13 2739367865 Novosphingobium sp. GV013 Isolate Unclassified
14 2838668709 Rhizobium sophoriradicis SEMIA 403 Isolate Nodule
15 2838701080 Rhizobium aethiopicum SEMIA 428 Isolate Nodule
16 2842146304 Rhizobium sophoriradicis SEMIA 454 Isolate Nodule
17 2842250916 Rhizobium etli SEMIA 484 Isolate Nodule
18 2842489311 Rhizobium sophoriradicis SEMIA 4061 Isolate Nodule
19 2842495871 Rhizobium etli SEMIA 4062 Isolate Nodule
20 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
21 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
22 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
23 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
24 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
25 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
26 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
27 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
28 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
29 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
30 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
31 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
32 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
33 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
34 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
35 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
36 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
37 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
38 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
39 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
40 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
41 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
42 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
43 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
44 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
45 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
46 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
47 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
55 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
56 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
57 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
58 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
59 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
60 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
61 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
62 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
63 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
64 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
65 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
66 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
67 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
68 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
69 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
70 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
71 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
72 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
73 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
74 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
75 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
76 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
77 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
78 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
79 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
80 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
81 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
82 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
83 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
84 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
85 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
86 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
87 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
88 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
89 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
90 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
91 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
92 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
93 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
94 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
95 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
96 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
97 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
98 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
99 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
100 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
101 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
102 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
103 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
104 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
105 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
106 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
107 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
108 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
109 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
110 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
111 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
112 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
113 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
114 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
115 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
116 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
117 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
118 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
119 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
120 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
121 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
122 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
123 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
124 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
125 3300049668 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_B_2_drought Metagenome Rhizosphere
126 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
127 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
128 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
129 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
130 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
131 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
132 8057575449 Rhizobium mayense CCGE526 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 86.58
Metatranscriptomes 0
Isolates 13.42

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.68
Nodule 10.74
Rhizoplane 8.05
Rhizosphere 72.48
Stem 0
Stem Tuber 0
Unclassified 6.04

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10007538 3300003203 Unclassified 4959
2 Ga0070690_100007515 3300005330 Bacteria 6241
3 Ga0070677_10007578 3300005333 Bacteria 3629
4 Ga0070669_100244739 3300005353 Bacteria 1426
5 Ga0070674_100074390 3300005356 Unclassified 2411
6 Ga0070709_10000093 3300005434 Bacteria 63072
7 Ga0070705_100031273 3300005440 Unclassified 2946
8 Ga0070694_100000467 3300005444 Bacteria 22129
9 Ga0070708_100000159 3300005445 Bacteria 47652
10 Ga0070678_100246844 3300005456 Unclassified 1495
11 Ga0070707_100320188 3300005468 Bacteria 1507
12 Ga0070698_100146460 3300005471 Bacteria 2311
13 Ga0070699_100000842 3300005518 Bacteria 28452
14 Ga0070686_100000489 3300005544 Bacteria 23915
15 Ga0070695_100003362 3300005545 Bacteria 9347
16 Ga0068863_100025599 3300005841 Bacteria 5626
17 Ga0081539_10000297 3300005985 Bacteria 111986
18 Ga0075366_10064063 3300006195 Bacteria 2186
19 Ga0075428_100010201 3300006844 Bacteria 10427
20 Ga0075428_100190805 3300006844 Unclassified 2216
21 Ga0075434_100186268 3300006871 Bacteria 2096
22 Ga0075435_100027674 3300007076 Bacteria 4437
23 Ga0105241_10034936 3300009174 Unclassified 3780
24 Ga0105237_10001721 3300009545 Bacteria 28293
25 Ga0157375_10000879 3300013308 Bacteria 26112
26 Ga0157375_10070467 3300013308 Bacteria 3506
27 Ga0157380_10003192 3300014326 Bacteria 11189
28 Ga0213876_10000419 3300021384 Bacteria 35397
29 Ga0209257_1002215 3300025304 Bacteria 20029
30 Ga0207699_10000097 3300025906 Bacteria 63020
31 Ga0207671_10001900 3300025914 Bacteria 23233
32 Ga0207646_10091057 3300025922 Bacteria 2730
33 Ga0207669_10052301 3300025937 Unclassified 2453
34 Ga0207640_10137357 3300025981 Bacteria 1777
35 Ga0207641_10178096 3300026088 Bacteria 1945
36 Ga0207683_10223038 3300026121 Unclassified 1718
37 Ga0265324_10047241 3300029957 Unclassified 1481
38 Ga0265328_10000006 3300031239 Bacteria 227698
39 Ga0265340_10018231 3300031247 Unclassified 3623
40 Ga0265339_10009855 3300031249 Bacteria 5967
41 Ga0265331_10001272 3300031250 Bacteria 18858
42 Ga0265316_10001712 3300031344 Bacteria 23280
43 Ga0265316_10015747 3300031344 Bacteria 6597
44 Ga0307408_100027356 3300031548 Bacteria 3929
45 Ga0316575_10031843 3300031665 Bacteria 2065
46 Ga0316579_10059697 3300031691 Bacteria 1793
47 Ga0265314_10034118 3300031711 Bacteria 3722
48 Ga0265342_10008825 3300031712 Bacteria 7188
49 Ga0265342_10034850 3300031712 Bacteria 3085
50 Ga0316577_10005600 3300031733 Bacteria 6597
51 Ga0307413_10035723 3300031824 Archaea 2854
52 Ga0307410_10075474 3300031852 Archaea 2350
53 Ga0307406_10035949 3300031901 Bacteria 3049
54 Ga0307407_10002365 3300031903 Archaea 7353
55 Ga0307412_10110030 3300031911 Bacteria 1965
56 Ga0307415_100146112 3300032126 Bacteria 1813
57 Ga0373932_0000209 3300035112 Bacteria 17180
58 Ga0316574_0028300 3300035398 Bacteria 3380
59 Ga0316582_0106690 3300036647 Bacteria 1860
60 Ga0316584_0018960 3300036712 Bacteria 4970
61 Ga0436364_0422966 3300037853 Bacteria 4603
62 Ga0436365_0912825 3300039437 Bacteria 101193
63 Ga0436365_1608250 3300039437 Bacteria 14260
64 Ga0439435_0001770 3300042436 Bacteria 4110
65 Ga0451577_0009774 3300042876 Bacteria 9197
66 Ga0466963_0081185 3300044694 Bacteria 2196
67 Ga0453684_0002342 3300044712 Bacteria 46336
68 Ga0453684_0055235 3300044712 Bacteria 5165
69 Ga0495580_0118922 3300046472 Bacteria 1834
70 Ga0495606_0002259 3300046507 Bacteria 22847
71 Ga0495606_0126587 3300046507 Bacteria 1523
72 Ga0495616_0023859 3300046513 Bacteria 3287
73 Ga0495648_0046174 3300046524 Bacteria 2702
74 Ga0495622_0005715 3300046557 Bacteria 5768
75 Ga0495633_0001145 3300046558 Bacteria 21273
76 Ga0495668_0000150 3300046616 Bacteria 105516
77 Ga0495611_0000224 3300046648 Bacteria 39649
78 Ga0495589_0034087 3300046794 Bacteria 2556
79 Ga0495674_0003213 3300047319 Bacteria 15873
80 Ga0495672_0056074 3300047320 Bacteria 2295
81 Ga0495683_0012646 3300047323 Bacteria 4432
82 Ga0495687_007549 3300047443 Bacteria 6383
83 Ga0495686_0015057 3300047472 Bacteria 5298
84 Ga0496101_0003313 3300048904 Bacteria 10013
85 Ga0496102_0016938 3300048905 Bacteria 6378
86 Ga0496104_0024334 3300048907 Bacteria 5570
87 Ga0496107_0067917 3300048910 Bacteria 2587
88 Ga0496108_0000472 3300048911 Bacteria 32264
89 Ga0496109_0039236 3300048912 Bacteria 4285
90 Ga0496111_0002427 3300048914 Bacteria 11244
91 Ga0496112_0007128 3300048915 Bacteria 9892
92 Ga0496113_0001437 3300048916 Bacteria 13226
93 Ga0496114_0001787 3300048917 Bacteria 16311
94 Ga0496114_0013386 3300048917 Bacteria 6577
95 Ga0496115_0246334 3300048918 Bacteria 1472
96 Ga0496119_0006903 3300048922 Bacteria 10363
97 Ga0496120_0002422 3300048923 Bacteria 18883
98 Ga0496125_0062445 3300048928 Bacteria 2979
99 Ga0495682_0014259 3300049460 Bacteria 3015
100 Ga0501032_0001964 3300049569 Bacteria 16181
101 Ga0501034_0046929 3300049571 Bacteria 4364
102 Ga0501034_0234676 3300049571 Bacteria 1782
103 Ga0501036_0188776 3300049572 Archaea 1734
104 Ga0501038_0051606 3300049574 Bacteria 3548
105 Ga0501039_0060576 3300049575 Archaea 2932
106 Ga0501039_0137263 3300049575 Archaea 1920
107 Ga0501040_0005933 3300049576 Archaea 7910
108 Ga0501041_0012034 3300049577 Archaea 5121
109 Ga0501042_0090005 3300049578 Archaea 2202
110 Ga0501046_0067667 3300049580 Archaea 2781
111 Ga0501046_0198105 3300049580 Unclassified 1495
112 Ga0501048_0065780 3300049582 Archaea 2563
113 Ga0501071_0008218 3300049587 Archaea 6888
114 Ga0501071_0058917 3300049587 Archaea 2777
115 Ga0501075_0019699 3300049591 Archaea 4897
116 Ga0501075_0299466 3300049591 Archaea 1225
117 Ga0501076_0008853 3300049592 Archaea 7401
118 Ga0501076_0073866 3300049592 Archaea 2730
119 Ga0501077_0045960 3300049593 Bacteria 2774
120 Ga0501233_004069 3300049668 Archaea 2660
121 Ga0501081_0184545 3300049743 Archaea 1509
122 Ga0501035_0146517 3300049822 Bacteria 2050
123 Ga0501035_0236220 3300049822 Archaea 1556
124 nmdc:mga05p37_423055_c1 3300050507 Bacteria 1550
125 nmdc:mga05p37_61602_c1 3300050507 Bacteria 4618
126 nmdc:mga0a205_76314_c1 3300050515 Bacteria 3239
127 Ga0500616_0000606 3300053153 Bacteria 43378
128 Ga0500616_0001229 3300053153 Bacteria 25755
129 Ga0530510_0113133 3300061734 Archaea 1989

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300049591 Ga0501075_0299466 Ga0501075_0299466_55_1170 343
2 3300049592 Ga0501076_0008853 Ga0501076_0008853_650_1855 377
3 3300050507 nmdc:mga05p37_423055_c1 nmdc:mga05p37_423055_c1_326_1495 389
4 3300046558 Ga0495633_0001145 Ga0495633_0001145_15291_16607 417
5 3300046616 Ga0495668_0000150 Ga0495668_0000150_27281_28594 418
6 3300042876 Ga0451577_0009774 Ga0451577_0009774_3572_4867 420
7 3300044712 Ga0453684_0055235 Ga0453684_0055235_3201_4496 420
8 3300048905 Ga0496102_0016938 Ga0496102_0016938_2377_3669 427
9 3300048907 Ga0496104_0024334 Ga0496104_0024334_370_1662 427
10 3300048911 Ga0496108_0000472 Ga0496108_0000472_23878_25170 427
11 3300048912 Ga0496109_0039236 Ga0496109_0039236_2845_4137 427
12 3300048914 Ga0496111_0002427 Ga0496111_0002427_8024_9316 427
13 3300048917 Ga0496114_0013386 Ga0496114_0013386_1134_2426 427
14 3300049575 Ga0501039_0137263 Ga0501039_0137263_314_1669 427
15 3300049576 Ga0501040_0005933 Ga0501040_0005933_4093_5448 427
16 3300049580 Ga0501046_0067667 Ga0501046_0067667_1165_2520 427
17 3300049587 Ga0501071_0008218 Ga0501071_0008218_5251_6606 427
18 3300049591 Ga0501075_0019699 Ga0501075_0019699_43_1398 427
19 3300049743 Ga0501081_0184545 Ga0501081_0184545_127_1482 427
20 3300049822 Ga0501035_0236220 Ga0501035_0236220_31_1386 427
21 3300046648 Ga0495611_0000224 Ga0495611_0000224_26478_27833 430
22 3300044712 Ga0453684_0002342 Ga0453684_0002342_43000_44298 431
23 3300049572 Ga0501036_0188776 Ga0501036_0188776_293_1672 431
24 3300049575 Ga0501039_0060576 Ga0501039_0060576_29_1408 431
25 3300049577 Ga0501041_0012034 Ga0501041_0012034_3683_5062 431
26 3300049578 Ga0501042_0090005 Ga0501042_0090005_781_2160 431
27 3300049582 Ga0501048_0065780 Ga0501048_0065780_833_2212 431
28 3300049587 Ga0501071_0058917 Ga0501071_0058917_779_2158 431
29 3300049592 Ga0501076_0073866 Ga0501076_0073866_92_1471 431
30 3300061734 Ga0530510_0113133 Ga0530510_0113133_566_1945 431
31 3300013308 Ga0157375_10070467 Ga0157375_100704672 432
32 3300014326 Ga0157380_10003192 Ga0157380_100031924 432
33 3300031548 Ga0307408_100027356 Ga0307408_1000273563 432
34 3300037853 Ga0436364_0422966 Ga0436364_0422966_2546_3847 432
35 3300042436 Ga0439435_0001770 Ga0439435_0001770_2420_3766 432
36 3300005468 Ga0070707_100320188 Ga0070707_1003201881 433
37 3300009545 Ga0105237_10001721 Ga0105237_1000172115 433
38 3300025914 Ga0207671_10001900 Ga0207671_100019007 433
39 3300025922 Ga0207646_10091057 Ga0207646_100910572 433
40 3300049571 Ga0501034_0234676 Ga0501034_0234676_304_1665 433
41 3300050507 nmdc:mga05p37_61602_c1 nmdc:mga05p37_61602_c1_2080_3387 433
42 3300048922 Ga0496119_0006903 Ga0496119_0006903_5173_6486 434
43 3300048923 Ga0496120_0002422 Ga0496120_0002422_6035_7348 434
44 3300048928 Ga0496125_0062445 Ga0496125_0062445_1105_2418 434
45 3300049569 Ga0501032_0001964 Ga0501032_0001964_8168_9481 434
46 3300053153 Ga0500616_0000606 Ga0500616_0000606_40012_41325 434
47 3300029957 Ga0265324_10047241 Ga0265324_100472411 436
48 3300031824 Ga0307413_10035723 Ga0307413_100357231 436
49 3300031852 Ga0307410_10075474 Ga0307410_100754741 436
50 3300031901 Ga0307406_10035949 Ga0307406_100359493 436
51 3300031903 Ga0307407_10002365 Ga0307407_100023656 436
52 3300031911 Ga0307412_10110030 Ga0307412_101100301 436
53 3300032126 Ga0307415_100146112 Ga0307415_1001461121 436
54 3300049668 Ga0501233_004069 Ga0501233_004069_465_1838 436
55 3300013308 Ga0157375_10000879 Ga0157375_1000087916 437
56 iso_pu_bacteria 2509276021 2509385925 437
57 iso_pu_bacteria 2516143018 2516205858 437
58 iso_pu_bacteria 8057575449 8057580196 437
59 3300005471 Ga0070698_100146460 Ga0070698_1001464602 438
60 3300005440 Ga0070705_100031273 Ga0070705_1000312731 439
61 3300031344 Ga0265316_10015747 Ga0265316_100157474 439
62 3300031712 Ga0265342_10008825 Ga0265342_100088256 439
63 3300048917 Ga0496114_0001787 Ga0496114_0001787_1186_2556 439
64 3300025304 Ga0209257_1002215 Ga0209257_10022155 440
65 3300031239 Ga0265328_10000006 Ga0265328_10000006137 440
66 3300031250 Ga0265331_10001272 Ga0265331_1000127214 440
67 3300031344 Ga0265316_10001712 Ga0265316_1000171225 440
68 3300031712 Ga0265342_10034850 Ga0265342_100348502 440
69 iso_pu_bacteria 2718217882 2719178761 440
70 iso_pu_bacteria 2718218009 2719729126 440
71 iso_pu_bacteria 2718218363 2721143372 440
72 iso_pu_bacteria 2718218366 2721166465 440
73 iso_pu_bacteria 2721755514 2722837443 440
74 iso_pu_bacteria 2721755810 2724041019 440
75 iso_pu_bacteria 2728369365 2730161222 440
76 iso_pu_bacteria 2739367664 2739652205 440
77 iso_pu_bacteria 2739367865 2740030679 440
78 iso_pu_bacteria 2838668709 2838675119 440
79 iso_pu_bacteria 2838701080 2838707456 440
80 iso_pu_bacteria 2842146304 2842152029 440
81 iso_pu_bacteria 2842250916 2842257268 440
82 iso_pu_bacteria 2842489311 2842495454 440
83 iso_pu_bacteria 2842495871 2842501710 440
84 3300005333 Ga0070677_10007578 Ga0070677_100075782 441
85 3300005356 Ga0070674_100074390 Ga0070674_1000743902 441
86 3300005445 Ga0070708_100000159 Ga0070708_10000015916 441
87 3300005456 Ga0070678_100246844 Ga0070678_1002468441 441
88 3300005518 Ga0070699_100000842 Ga0070699_1000008423 441
89 3300005841 Ga0068863_100025599 Ga0068863_1000255993 441
90 3300006871 Ga0075434_100186268 Ga0075434_1001862682 441
91 3300025937 Ga0207669_10052301 Ga0207669_100523012 441
92 3300025981 Ga0207640_10137357 Ga0207640_101373571 441
93 3300026088 Ga0207641_10178096 Ga0207641_101780962 441
94 3300026121 Ga0207683_10223038 Ga0207683_102230382 441
95 3300044694 Ga0466963_0081185 Ga0466963_0081185_339_1712 441
96 3300049593 Ga0501077_0045960 Ga0501077_0045960_68_1393 441
97 3300049822 Ga0501035_0146517 Ga0501035_0146517_23_1357 441
98 3300005353 Ga0070669_100244739 Ga0070669_1002447391 442
99 3300005444 Ga0070694_100000467 Ga0070694_10000046711 442
100 3300005545 Ga0070695_100003362 Ga0070695_1000033622 442
101 3300006195 Ga0075366_10064063 Ga0075366_100640632 442
102 3300006844 Ga0075428_100010201 Ga0075428_1000102017 442
103 3300007076 Ga0075435_100027674 Ga0075435_1000276742 442
104 3300031247 Ga0265340_10018231 Ga0265340_100182311 442
105 3300031249 Ga0265339_10009855 Ga0265339_100098553 442
106 3300031665 Ga0316575_10031843 Ga0316575_100318431 442
107 3300031691 Ga0316579_10059697 Ga0316579_100596971 442
108 3300031711 Ga0265314_10034118 Ga0265314_100341183 442
109 3300031733 Ga0316577_10005600 Ga0316577_100056004 442
110 3300035398 Ga0316574_0028300 Ga0316574_0028300_1818_3170 442
111 3300036647 Ga0316582_0106690 Ga0316582_0106690_169_1521 442
112 3300036712 Ga0316584_0018960 Ga0316584_0018960_3017_4369 442
113 3300046472 Ga0495580_0118922 Ga0495580_0118922_254_1615 442
114 3300046507 Ga0495606_0002259 Ga0495606_0002259_8585_9961 442
115 3300046507 Ga0495606_0126587 Ga0495606_0126587_56_1417 442
116 3300046513 Ga0495616_0023859 Ga0495616_0023859_871_2232 442
117 3300046524 Ga0495648_0046174 Ga0495648_0046174_802_2163 442
118 3300046557 Ga0495622_0005715 Ga0495622_0005715_590_1951 442
119 3300046794 Ga0495589_0034087 Ga0495589_0034087_673_2049 442
120 3300047319 Ga0495674_0003213 Ga0495674_0003213_6548_7909 442
121 3300047320 Ga0495672_0056074 Ga0495672_0056074_864_2225 442
122 3300047323 Ga0495683_0012646 Ga0495683_0012646_1675_3051 442
123 3300047443 Ga0495687_007549 Ga0495687_007549_580_1941 442
124 3300047472 Ga0495686_0015057 Ga0495686_0015057_343_1722 442
125 3300048904 Ga0496101_0003313 Ga0496101_0003313_7693_9054 442
126 3300048910 Ga0496107_0067917 Ga0496107_0067917_366_1727 442
127 3300048915 Ga0496112_0007128 Ga0496112_0007128_4302_5663 442
128 3300048916 Ga0496113_0001437 Ga0496113_0001437_9365_10726 442
129 3300048918 Ga0496115_0246334 Ga0496115_0246334_101_1462 442
130 3300049460 Ga0495682_0014259 Ga0495682_0014259_931_2292 442
131 3300049571 Ga0501034_0046929 Ga0501034_0046929_1731_3068 442
132 3300049574 Ga0501038_0051606 Ga0501038_0051606_225_1562 442
133 3300049580 Ga0501046_0198105 Ga0501046_0198105_58_1395 442
134 3300050515 nmdc:mga0a205_76314_c1 nmdc:mga0a205_76314_c1_726_2060 442
135 iso_pu_bacteria 2562617112 2563058997 442
136 iso_pu_bacteria 2711768613 2713480725 442
137 3300005544 Ga0070686_100000489 Ga0070686_1000004894 443
138 3300005434 Ga0070709_10000093 Ga0070709_1000009339 445
139 3300021384 Ga0213876_10000419 Ga0213876_100004194 445
140 3300025906 Ga0207699_10000097 Ga0207699_100000975 445
141 3300035112 Ga0373932_0000209 Ga0373932_0000209_11646_12995 445
142 3300039437 Ga0436365_0912825 Ga0436365_0912825_17254_18633 445
143 3300005330 Ga0070690_100007515 Ga0070690_1000075153 446
144 3300009174 Ga0105241_10034936 Ga0105241_100349362 446
145 3300039437 Ga0436365_1608250 Ga0436365_1608250_8253_9596 446
146 3300053153 Ga0500616_0001229 Ga0500616_0001229_4952_6298 446
147 3300003203 JGI25406J46586_10007538 JGI25406J46586_100075382 448
148 3300005985 Ga0081539_10000297 Ga0081539_1000029754 448
149 3300006844 Ga0075428_100190805 Ga0075428_1001908051 448

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13281

MAP3K_TRAF_bd

MAP3K TRAFs-binding domain

115

466

0.87

PF20308

TPR-S

Tetratricopeptide Repeats-Sensor

259

370

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
1na3-assembly1.cif.gz_A design of stable alpha-helical arrays from an idealized tpr motif 0.8668 252 342
1na3-assembly2.cif.gz_B design of stable alpha-helical arrays from an idealized tpr motif 0.8448 252 342
5ulm-assembly2.cif.gz_B structure of the ask1 central regulatory region 0.8151 185 420
2wqh-assembly1.cif.gz_A-2 crystal structure of ctpr3y3 0.813 250 363
5ulm-assembly1.cif.gz_A structure of the ask1 central regulatory region 0.8123 185 420
ID Description Score Start End Superfamily
af_Q17RB8_210_325_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.8864 216 343 1.25.40.10
af_Q2QMH0_13_127_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.879 216 342 1.25.40.10
af_F1RD24_261_379_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.8655 252 359 1.25.40.10
af_Q17RB8_210_325_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.8654 216 343 1.25.40.10
af_Q8IUR5_683_793_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.8637 218 327 1.25.40.10
ID Description Score Start End GO Terms
AF-A0A6B3M8G8-F1-model_v4 Tetratricopeptide repeat protein 0.8148 210 356
AF-A0A356CJF8-F1-model_v4 Uncharacterized protein 0.8062 216 403 GO:0008476
AF-A0A2V9L8P6-F1-model_v4 Uncharacterized protein 0.7818 232 374
AF-A0A2D5ZI67-F1-model_v4 Uncharacterized protein 0.7709 203 372
AF-A0A2U0VM01-F1-model_v4 deleted 0.7669 220 365

Feature Viewer

pLDDT pTM Quality
87.34 0.63 Medium
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Predicted Structure (AlphaFold2)

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