F204210

General Info

Members Datasets Scaffolds Average Seq Length
148 97 135 253

Family's Representative Sequence

Representative Sequence 3300047472|Ga0495686_0116731|Ga0495686_0116731_445_1284
Length 279
Sequence MRTTVLMMTHESPFLDGMYMDKTVESAAAAVADIPNGSTLAVGGFGLVGVPVTLIQALLEQGASDLEVVSNNCGVDGWGLGVLLSHGRIRRIIASFIGENKEFARQYLAGEVEVELTPQGSLAERLRSGGVGIPAFFTPTGVGTVVSQGGMPWRYASDGSVAVVSPPKQTQVIDSLGEPREYVLEHAIRADFGLVRAAKGDRHGNLVFEKSARNFNPPAGMSGRITIAEVDELVEPGELDPDEVHLPGIYVDRVVLLTAEQAGDLPIEKTTVRRRGENS

Samples

Sample ID Description Type Environment
1 2619618881 Frankia sp. ACN1ag Isolate Unclassified
2 2619619003 Frankia sp. CpI1-P Isolate Nodule
3 2626541554 Frankia sp. AvcI.1 Isolate Nodule
4 2643221601 Kitasatospora sp. Root187 Isolate Unclassified
5 2643221631 Kitasatospora sp. Root107 Isolate Unclassified
6 2684623035 Frankia sp. NRRL B-16219 Isolate Rhizosphere
7 2773857922 Frankia sp. CcI49 Isolate Nodule
8 2857479173 Micrococcus sp. R-74225 Isolate Unclassified
9 2857632687 Micrococcus sp. R-73081 Isolate Unclassified
10 2870801768 Micrococcus endophyticus DSM 17945 Isolate Unclassified
11 2870804320 Micrococcus yunnanensis DSM 21948 Isolate Unclassified
12 2939657138 Conyzicola nivalis 2857 Isolate Rhizosphere
13 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
14 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
15 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
16 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
17 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
18 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
19 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
20 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
21 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
22 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
23 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
24 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
25 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
26 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
27 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
28 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
29 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
30 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
31 3300012513 Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.old.250510 Metagenome Rhizosphere
32 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
33 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
34 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
35 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
36 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
37 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
38 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
39 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
40 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
41 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
42 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
43 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
44 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300028017 Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE4 Metagenome Rhizosphere
58 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
59 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
60 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
61 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
62 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
63 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
64 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
65 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
66 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
67 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
68 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
69 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
70 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
71 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
72 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
73 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
74 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
75 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
76 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
77 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
78 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
79 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
80 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
81 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
82 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
83 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
84 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
85 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
86 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
87 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
88 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
89 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
90 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
91 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
92 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
93 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
94 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
95 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
96 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
97 8054913762 Frankia gtarii Agncl-10 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 89.86
Metatranscriptomes 1.35
Isolates 8.78

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.7
Nodule 2.7
Rhizoplane 0.68
Rhizosphere 70.95
Stem 0
Stem Tuber 0
Unclassified 22.97

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070683_100108106 3300005329 Bacteria 2623
2 Ga0070691_10022435 3300005341 Bacteria 2928
3 Ga0070714_100000175 3300005435 Bacteria 52118
4 Ga0070714_100058568 3300005435 Bacteria 3301
5 Ga0070714_100275796 3300005435 Bacteria 1561
6 Ga0070713_100220347 3300005436 Bacteria 1721
7 Ga0070679_100174653 3300005530 Bacteria 2121
8 Ga0068853_100023106 3300005539 Bacteria 5204
9 Ga0068855_100001391 3300005563 Bacteria 29983
10 Ga0068855_100084534 3300005563 Bacteria 3673
11 Ga0068855_100436822 3300005563 Bacteria 1430
12 Ga0068854_100000005 3300005578 Bacteria 200295
13 Ga0068858_100000152 3300005842 Bacteria 72991
14 Ga0081455_10002085 3300005937 Bacteria 23847
15 Ga0070717_10209355 3300006028 Bacteria 1711
16 Ga0070717_10473897 3300006028 Bacteria 1130
17 Ga0075365_10029687 3300006038 Bacteria 3498
18 Ga0075434_100716178 3300006871 Bacteria 1018
19 Ga0105240_10436113 3300009093 Bacteria 1469
20 Ga0105240_10865268 3300009093 Bacteria 975
21 Ga0105247_10000043 3300009101 Bacteria 157839
22 Ga0105247_10003337 3300009101 Bacteria 10507
23 Ga0114129_10564183 3300009147 Bacteria 1479
24 Ga0105243_10794403 3300009148 Bacteria 932
25 Ga0105248_10004522 3300009177 Bacteria 15388
26 Ga0157326_1018996 3300012513 Bacteria 834
27 Ga0157373_10195653 3300013100 Bacteria 1425
28 Ga0157369_10836931 3300013105 Bacteria 945
29 Ga0157374_10119128 3300013296 Bacteria 2546
30 Ga0163163_10029461 3300014325 Bacteria 5281
31 Ga0157379_10001539 3300014968 Bacteria 18974
32 Ga0206356_11488691 3300020070 Bacteria 3962
33 Ga0213873_10002077 3300021358 Bacteria 3425
34 Ga0213873_10005244 3300021358 Bacteria 2474
35 Ga0213872_10009633 3300021361 Bacteria 4625
36 Ga0213872_10015312 3300021361 Bacteria 3568
37 Ga0213872_10109910 3300021361 Bacteria 1225
38 Ga0213872_10113014 3300021361 Bacteria 1205
39 Ga0213874_10000443 3300021377 Bacteria 8271
40 Ga0213874_10020368 3300021377 Bacteria 1817
41 Ga0213876_10008194 3300021384 Bacteria 5658
42 Ga0213875_10000001 3300021388 Bacteria 2793540
43 Ga0213875_10002987 3300021388 Bacteria 9848
44 Ga0213875_10041771 3300021388 Bacteria 2157
45 Ga0213871_10005808 3300021441 Bacteria 2575
46 Ga0207710_10000064 3300025900 Bacteria 162498
47 Ga0207710_10000764 3300025900 Bacteria 17589
48 Ga0207695_10263938 3300025913 Bacteria 1619
49 Ga0207695_10577571 3300025913 Bacteria 1005
50 Ga0207649_10065131 3300025920 Bacteria 2306
51 Ga0207652_10150797 3300025921 Bacteria 2082
52 Ga0207664_10038909 3300025929 Bacteria 3689
53 Ga0207711_10003784 3300025941 Bacteria 13022
54 Ga0207661_10093723 3300025944 Bacteria 2507
55 Ga0207667_10000223 3300025949 Bacteria 79717
56 Ga0207667_10005848 3300025949 Bacteria 14980
57 Ga0207640_10000004 3300025981 Bacteria 489403
58 Ga0207703_10000181 3300026035 Bacteria 73537
59 Ga0207639_10041170 3300026041 Bacteria 3455
60 Ga0207702_10041121 3300026078 Bacteria 3875
61 Ga0207675_100706514 3300026118 Bacteria 1017
62 Ga0265356_1000017 3300028017 Bacteria 26431
63 Ga0265338_10000162 3300028800 Bacteria 121694
64 Ga0265338_10076986 3300028800 Bacteria 2822
65 Ga0265760_10004661 3300031090 Bacteria 3925
66 Ga0265332_10012588 3300031238 Bacteria 3751
67 Ga0265325_10000021 3300031241 Bacteria 124310
68 Ga0265325_10012257 3300031241 Bacteria 4906
69 Ga0265325_10169945 3300031241 Bacteria 1021
70 Ga0265339_10011511 3300031249 Bacteria 5441
71 Ga0265327_10041215 3300031251 Bacteria 2490
72 Ga0265313_10000001 3300031595 Bacteria 313647
73 Ga0307514_10014581 3300031649 Bacteria 6502
74 Ga0265342_10008975 3300031712 Bacteria 7100
75 Ga0307507_10053622 3300033179 Bacteria 3850
76 Ga0395899_0005272 3300037312 Bacteria 10040
77 Ga0395900_0059166 3300037418 Bacteria 3944
78 Ga0436364_0091135 3300037853 Bacteria 1687
79 Ga0436364_0273345 3300037853 Bacteria 2794207
80 Ga0436364_0598800 3300037853 Bacteria 12624
81 Ga0436364_0660422 3300037853 Bacteria 3194
82 Ga0436364_0723352 3300037853 Bacteria 4741
83 Ga0436364_1111389 3300037853 Bacteria 2697
84 Ga0436364_1209130 3300037853 Bacteria 2256
85 Ga0436364_1345664 3300037853 Bacteria 23347
86 Ga0436365_0636706 3300039437 Bacteria 1513
87 Ga0436365_0990278 3300039437 Bacteria 20528
88 Ga0436360_0033530 3300039438 Bacteria 1579
89 Ga0436360_0184851 3300039438 Bacteria 1137
90 Ga0436360_0285385 3300039438 Bacteria 10402
91 Ga0436360_0955073 3300039438 Bacteria 1110
92 Ga0436360_0971823 3300039438 Bacteria 1700
93 Ga0436361_0146769 3300039447 Bacteria 1515
94 Ga0436361_0158310 3300039447 Bacteria 2246
95 Ga0436361_0160546 3300039447 Bacteria 4162
96 Ga0436361_0365204 3300039447 Bacteria 1840
97 Ga0436361_0462796 3300039447 Bacteria 25914
98 Ga0436361_1062047 3300039447 Bacteria 8070
99 Ga0436361_1136622 3300039447 Bacteria 28782
100 Ga0436363_0159044 3300039450 Bacteria 17958
101 Ga0436363_0321562 3300039450 Bacteria 1899
102 Ga0436363_0373130 3300039450 Bacteria 1508
103 Ga0436363_0461289 3300039450 Bacteria 1192
104 Ga0436363_0902059 3300039450 Bacteria 25327
105 Ga0436362_0051303 3300039453 Bacteria 6141
106 Ga0436362_0099124 3300039453 Bacteria 1473
107 Ga0436362_0105383 3300039453 Bacteria 4067
108 Ga0436362_0195718 3300039453 Bacteria 1144
109 Ga0436362_0246869 3300039453 Bacteria 6299
110 Ga0436362_0389941 3300039453 Bacteria 1364
111 Ga0436362_0697903 3300039453 Bacteria 1359
112 Ga0439465_0019589 3300041413 Bacteria 2116
113 Ga0451793_1025099 3300041452 Bacteria 1907
114 Ga0466966_0032927 3300044684 Bacteria 3355
115 Ga0466966_0038605 3300044684 Bacteria 3077
116 Ga0466961_0043380 3300044693 Bacteria 2881
117 Ga0466963_0218724 3300044694 Bacteria 1334
118 Ga0466957_0000614 3300044842 Bacteria 18001
119 Ga0466959_0133405 3300045049 Bacteria 1759
120 Ga0466958_0031262 3300045836 Bacteria 3164
121 Ga0466958_0039650 3300045836 Bacteria 2830
122 Ga0466967_0049546 3300045976 Bacteria 3673
123 Ga0495650_0000321 3300046471 Bacteria 85831
124 Ga0495624_0094977 3300046690 Bacteria 1838
125 Ga0495686_0116731 3300047472 Bacteria 1595
126 Ga0496119_0000215 3300048922 Bacteria 82231
127 Ga0496119_0027662 3300048922 Bacteria 3891
128 Ga0496120_0000264 3300048923 Bacteria 87474
129 Ga0496121_0005766 3300048924 Bacteria 15709
130 nmdc:mga0yw44_53322_c1 3300050492 Bacteria 2455
131 nmdc:mga05p37_247365_c1 3300050507 Bacteria 1535
132 nmdc:mga0n895_682938_c1 3300050512 Bacteria 1024
133 nmdc:mga0rr50_342948_c1 3300050513 Bacteria 1255
134 Ga0500556_0000059 3300053104 Bacteria 112837
135 Ga0500568_0000012 3300053139 Bacteria 225711

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300044693 Ga0466961_0043380 Ga0466961_0043380_1805_2509 231
2 3300046690 Ga0495624_0094977 Ga0495624_0094977_1111_1818 231
3 3300005563 Ga0068855_100436822 Ga0068855_1004368222 232
4 3300012513 Ga0157326_1018996 Ga0157326_10189961 234
5 iso_pu_bacteria 2684623035 2686536775 243
6 iso_pu_bacteria 2773857922 2774854294 243
7 3300009148 Ga0105243_10794403 Ga0105243_107944031 246
8 3300005842 Ga0068858_100000152 Ga0068858_10000015245 248
9 3300009101 Ga0105247_10000043 Ga0105247_1000004395 248
10 3300009101 Ga0105247_10003337 Ga0105247_100033378 248
11 3300009177 Ga0105248_10004522 Ga0105248_1000452216 248
12 3300014325 Ga0163163_10029461 Ga0163163_100294614 248
13 3300014968 Ga0157379_10001539 Ga0157379_1000153910 248
14 3300025900 Ga0207710_10000064 Ga0207710_10000064103 248
15 3300025900 Ga0207710_10000764 Ga0207710_1000076410 248
16 3300025941 Ga0207711_10003784 Ga0207711_1000378416 248
17 3300026035 Ga0207703_10000181 Ga0207703_1000018141 248
18 3300026118 Ga0207675_100706514 Ga0207675_1007065142 248
19 3300048922 Ga0496119_0000215 Ga0496119_0000215_54403_55149 248
20 3300048922 Ga0496119_0027662 Ga0496119_0027662_422_1168 248
21 3300048923 Ga0496120_0000264 Ga0496120_0000264_29359_30105 248
22 3300048924 Ga0496121_0005766 Ga0496121_0005766_11939_12685 248
23 iso_pu_bacteria 2619618881 2619858974 248
24 iso_pu_bacteria 2619619003 2620350509 248
25 iso_pu_bacteria 2626541554 2626639389 248
26 iso_pu_bacteria 2643221601 2644013470 248
27 iso_pu_bacteria 2643221631 2644179349 248
28 iso_pu_bacteria 2939657138 2939660313 248
29 iso_pu_bacteria 8054913762 8054915508 248
30 3300006028 Ga0070717_10473897 Ga0070717_104738972 249
31 3300005435 Ga0070714_100275796 Ga0070714_1002757962 250
32 3300006871 Ga0075434_100716178 Ga0075434_1007161782 250
33 3300021358 Ga0213873_10005244 Ga0213873_100052443 250
34 3300039438 Ga0436360_0955073 Ga0436360_0955073_276_1028 250
35 3300039453 Ga0436362_0051303 Ga0436362_0051303_249_1001 250
36 3300050512 nmdc:mga0n895_682938_c1 nmdc:mga0n895_682938_c1_191_943 250
37 3300050513 nmdc:mga0rr50_342948_c1 nmdc:mga0rr50_342948_c1_307_1059 250
38 iso_pu_bacteria 2857479173 2857479279 250
39 iso_pu_bacteria 2857632687 2857633217 250
40 iso_pu_bacteria 2870801768 2870802890 250
41 iso_pu_bacteria 2870804320 2870804967 250
42 3300005436 Ga0070713_100220347 Ga0070713_1002203472 251
43 3300005539 Ga0068853_100023106 Ga0068853_1000231063 251
44 3300005578 Ga0068854_100000005 Ga0068854_100000005155 251
45 3300006038 Ga0075365_10029687 Ga0075365_100296873 251
46 3300013100 Ga0157373_10195653 Ga0157373_101956532 251
47 3300020070 Ga0206356_11488691 Ga0206356_114886913 251
48 3300021361 Ga0213872_10015312 Ga0213872_100153122 251
49 3300021361 Ga0213872_10109910 Ga0213872_101099102 251
50 3300021361 Ga0213872_10113014 Ga0213872_101130142 251
51 3300025920 Ga0207649_10065131 Ga0207649_100651312 251
52 3300025981 Ga0207640_10000004 Ga0207640_10000004156 251
53 3300026041 Ga0207639_10041170 Ga0207639_100411703 251
54 3300026078 Ga0207702_10041121 Ga0207702_100411214 251
55 3300037853 Ga0436364_1111389 Ga0436364_1111389_1044_1799 251
56 3300039438 Ga0436360_0033530 Ga0436360_0033530_412_1167 251
57 3300039438 Ga0436360_0184851 Ga0436360_0184851_256_1011 251
58 3300039438 Ga0436360_0971823 Ga0436360_0971823_30_785 251
59 3300039447 Ga0436361_0365204 Ga0436361_0365204_751_1506 251
60 3300039447 Ga0436361_0462796 Ga0436361_0462796_3726_4481 251
61 3300039447 Ga0436361_1062047 Ga0436361_1062047_4038_4793 251
62 3300039450 Ga0436363_0461289 Ga0436363_0461289_40_795 251
63 3300039453 Ga0436362_0099124 Ga0436362_0099124_313_1068 251
64 3300050492 nmdc:mga0yw44_53322_c1 nmdc:mga0yw44_53322_c1_1077_1832 251
65 3300005329 Ga0070683_100108106 Ga0070683_1001081062 252
66 3300005341 Ga0070691_10022435 Ga0070691_100224353 252
67 3300005435 Ga0070714_100000175 Ga0070714_10000017551 252
68 3300005435 Ga0070714_100058568 Ga0070714_1000585683 252
69 3300005530 Ga0070679_100174653 Ga0070679_1001746532 252
70 3300005563 Ga0068855_100001391 Ga0068855_10000139118 252
71 3300005563 Ga0068855_100084534 Ga0068855_1000845344 252
72 3300005937 Ga0081455_10002085 Ga0081455_100020859 252
73 3300006028 Ga0070717_10209355 Ga0070717_102093552 252
74 3300009093 Ga0105240_10436113 Ga0105240_104361132 252
75 3300009093 Ga0105240_10865268 Ga0105240_108652681 252
76 3300009147 Ga0114129_10564183 Ga0114129_105641832 252
77 3300013105 Ga0157369_10836931 Ga0157369_108369311 252
78 3300013296 Ga0157374_10119128 Ga0157374_101191282 252
79 3300021358 Ga0213873_10002077 Ga0213873_100020774 252
80 3300021361 Ga0213872_10009633 Ga0213872_100096335 252
81 3300021377 Ga0213874_10000443 Ga0213874_100004436 252
82 3300021377 Ga0213874_10020368 Ga0213874_100203682 252
83 3300021384 Ga0213876_10008194 Ga0213876_100081942 252
84 3300021388 Ga0213875_10000001 Ga0213875_100000012107 252
85 3300021388 Ga0213875_10002987 Ga0213875_100029874 252
86 3300021388 Ga0213875_10041771 Ga0213875_100417712 252
87 3300021441 Ga0213871_10005808 Ga0213871_100058082 252
88 3300025913 Ga0207695_10263938 Ga0207695_102639381 252
89 3300025913 Ga0207695_10577571 Ga0207695_105775712 252
90 3300025921 Ga0207652_10150797 Ga0207652_101507972 252
91 3300025929 Ga0207664_10038909 Ga0207664_100389092 252
92 3300025944 Ga0207661_10093723 Ga0207661_100937232 252
93 3300025949 Ga0207667_10000223 Ga0207667_1000022366 252
94 3300025949 Ga0207667_10005848 Ga0207667_1000584811 252
95 3300028017 Ga0265356_1000017 Ga0265356_100001722 252
96 3300028800 Ga0265338_10000162 Ga0265338_1000016246 252
97 3300028800 Ga0265338_10076986 Ga0265338_100769862 252
98 3300031090 Ga0265760_10004661 Ga0265760_100046612 252
99 3300031238 Ga0265332_10012588 Ga0265332_100125882 252
100 3300031241 Ga0265325_10000021 Ga0265325_1000002180 252
101 3300031241 Ga0265325_10012257 Ga0265325_100122576 252
102 3300031241 Ga0265325_10169945 Ga0265325_101699451 252
103 3300031249 Ga0265339_10011511 Ga0265339_100115114 252
104 3300031251 Ga0265327_10041215 Ga0265327_100412153 252
105 3300031595 Ga0265313_10000001 Ga0265313_10000001265 252
106 3300031649 Ga0307514_10014581 Ga0307514_100145814 252
107 3300031712 Ga0265342_10008975 Ga0265342_100089754 252
108 3300033179 Ga0307507_10053622 Ga0307507_100536223 252
109 3300037312 Ga0395899_0005272 Ga0395899_0005272_2012_2770 252
110 3300037418 Ga0395900_0059166 Ga0395900_0059166_656_1414 252
111 3300037853 Ga0436364_0091135 Ga0436364_0091135_130_888 252
112 3300037853 Ga0436364_0273345 Ga0436364_0273345_2214377_2215141 252
113 3300037853 Ga0436364_0598800 Ga0436364_0598800_3018_3779 252
114 3300037853 Ga0436364_0660422 Ga0436364_0660422_1040_1801 252
115 3300037853 Ga0436364_0723352 Ga0436364_0723352_1396_2154 252
116 3300037853 Ga0436364_1209130 Ga0436364_1209130_1149_1910 252
117 3300037853 Ga0436364_1345664 Ga0436364_1345664_19208_19969 252
118 3300039437 Ga0436365_0636706 Ga0436365_0636706_625_1386 252
119 3300039437 Ga0436365_0990278 Ga0436365_0990278_8568_9326 252
120 3300039438 Ga0436360_0285385 Ga0436360_0285385_4244_5005 252
121 3300039447 Ga0436361_0146769 Ga0436361_0146769_155_925 252
122 3300039447 Ga0436361_0158310 Ga0436361_0158310_544_1308 252
123 3300039447 Ga0436361_0160546 Ga0436361_0160546_1790_2551 252
124 3300039447 Ga0436361_1136622 Ga0436361_1136622_26102_26872 252
125 3300039450 Ga0436363_0159044 Ga0436363_0159044_4428_5189 252
126 3300039450 Ga0436363_0321562 Ga0436363_0321562_1067_1828 252
127 3300039450 Ga0436363_0373130 Ga0436363_0373130_571_1332 252
128 3300039450 Ga0436363_0902059 Ga0436363_0902059_16892_17650 252
129 3300039453 Ga0436362_0105383 Ga0436362_0105383_1886_2647 252
130 3300039453 Ga0436362_0195718 Ga0436362_0195718_292_1053 252
131 3300039453 Ga0436362_0246869 Ga0436362_0246869_5073_5831 252
132 3300039453 Ga0436362_0389941 Ga0436362_0389941_499_1257 252
133 3300039453 Ga0436362_0697903 Ga0436362_0697903_522_1283 252
134 3300041413 Ga0439465_0019589 Ga0439465_0019589_499_1302 252
135 3300041452 Ga0451793_1025099 Ga0451793_1025099_649_1422 252
136 3300044684 Ga0466966_0032927 Ga0466966_0032927_2033_2827 252
137 3300044684 Ga0466966_0038605 Ga0466966_0038605_2162_2920 252
138 3300044694 Ga0466963_0218724 Ga0466963_0218724_426_1184 252
139 3300044842 Ga0466957_0000614 Ga0466957_0000614_15368_16126 252
140 3300045049 Ga0466959_0133405 Ga0466959_0133405_92_850 252
141 3300045836 Ga0466958_0031262 Ga0466958_0031262_437_1195 252
142 3300045836 Ga0466958_0039650 Ga0466958_0039650_282_1040 252
143 3300045976 Ga0466967_0049546 Ga0466967_0049546_746_1504 252
144 3300046471 Ga0495650_0000321 Ga0495650_0000321_9810_10607 252
145 3300047472 Ga0495686_0116731 Ga0495686_0116731_445_1284 252
146 3300050507 nmdc:mga05p37_247365_c1 nmdc:mga05p37_247365_c1_550_1341 252
147 3300053104 Ga0500556_0000059 Ga0500556_0000059_95454_96293 252
148 3300053139 Ga0500568_0000012 Ga0500568_0000012_95529_96368 252

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01144

CoA_trans

Coenzyme A transferase

24

257

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
3dlx-assembly2.cif.gz_C crystal structure of human 3-oxoacid coa transferase 1 0.9695 3 243
6lp1-assembly1.cif.gz_D crystal structure of acetate:succinate coa transferase (asct) from trypanosoma brucei. 0.9689 1 242
4kgb-assembly1.cif.gz_B structure of succinyl-coa: 3-ketoacid coa transferase from drosophila melanogaster 0.968 3 243
3oxo-assembly4.cif.gz_G succinyl-coa:3-ketoacid coa transferase from pig heart covalently bound to coa 0.9676 3 243
4kgb-assembly1.cif.gz_A structure of succinyl-coa: 3-ketoacid coa transferase from drosophila melanogaster 0.9667 3 243
ID Description Score Start End Superfamily
2nrbB01 Alpha Beta;3-Layer(aba) Sandwich;Glutaconate Coenzyme A-transferase;Glutaconate Coenzyme A-transferase 0.9724 3 234 3.40.1080.10
2nrbB01 Alpha Beta;3-Layer(aba) Sandwich;Glutaconate Coenzyme A-transferase;Glutaconate Coenzyme A-transferase 0.9643 3 234 3.40.1080.10
5dbnA00 Alpha Beta;3-Layer(aba) Sandwich;Glutaconate Coenzyme A-transferase;Glutaconate Coenzyme A-transferase 0.9625 1 232 3.40.1080.10
5dbnA00 Alpha Beta;3-Layer(aba) Sandwich;Glutaconate Coenzyme A-transferase;Glutaconate Coenzyme A-transferase 0.9495 1 232 3.40.1080.10
af_Q4E2P8_5_264_3.40.1080.10 Alpha Beta;3-Layer(aba) Sandwich;Glutaconate Coenzyme A-transferase;Glutaconate Coenzyme A-transferase 0.9492 1 252 3.40.1080.10
ID Description Score Start End GO Terms
AF-A0A544W5M5-F1-model_v4 CoA transferase subunit A 0.992 2 109 GO:0008260
GO:0046950
AF-A0A6V7LT92-F1-model_v4 Uncharacterized protein 0.9899 5 100 GO:0005739
GO:0008260
GO:0046950
AF-A0A7S0JCJ8-F1-model_v4 Succinyl-CoA--3-ketoacid-CoA transferase 0.9893 3 111 GO:0008410
AF-A7T8F7-F1-model_v4 Uncharacterized protein 0.9889 5 100 GO:0008410
AF-A0A2G5UUV4-F1-model_v4 Uncharacterized protein 0.9885 3 113 GO:0005739
GO:0008260
GO:0046950

Feature Viewer

pLDDT pTM Quality
90.77 0.88 High
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Predicted Structure (AlphaFold2)

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