F203481

General Info

Members Datasets Scaffolds Average Seq Length
148 123 143 135

Family's Representative Sequence

Representative Sequence 3300028653|Ga0265323_10005755|Ga0265323_100057553
Length 150
Sequence MNIQRSGSQPSVKGPSDWFTGTVRIDPLFPVTAPARAAGNTVTFEPGARTAWHTHPLGQTLIVIAGCGRVQRWDEPIEEIRPGDVVWFPPGEKHWHGAAPTTAMTHIAIQEQLDGKAVEWMEKVTDEQYQAPTSAGHCEHGAAGRTTARA

Samples

Sample ID Description Type Environment
1 2599185352 Sinorhizobium sp. NFACC03 Isolate Rhizoplane
2 2643221723 Ensifer sp. Root278 Isolate Unclassified
3 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
4 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
5 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
6 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
7 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
8 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
9 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
10 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
11 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
12 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
13 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
14 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
15 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
16 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
17 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
18 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
19 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
20 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
21 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
22 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
23 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
24 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
25 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
26 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
27 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
28 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
29 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
30 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
31 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
32 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
33 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
34 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
35 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
36 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
37 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
38 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
39 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
40 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
41 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
42 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
43 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
44 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
45 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
46 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
60 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
61 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
62 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
63 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
64 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
65 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
66 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
67 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
68 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
69 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
70 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
71 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
72 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
73 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
74 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
75 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
76 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
77 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
78 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
79 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
80 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
81 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
82 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
83 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
84 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
85 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
86 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
87 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
88 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
89 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
90 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
91 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
92 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
93 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
94 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
95 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
96 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
97 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
98 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
99 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
100 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
101 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
102 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
103 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
104 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
105 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
106 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
107 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
108 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
109 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
110 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
111 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
112 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
113 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
114 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
115 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
116 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
117 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
118 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
119 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
120 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
121 8005382845 Rhizobium sp. R634 Isolate Nodule
122 8005395548 Rhizobium sp. R339 Isolate Nodule
123 8018150411 Rhizobium straminoryzae SM12 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 95.95
Metatranscriptomes 0.68
Isolates 3.38

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 16.22
Nodule 1.35
Rhizoplane 2.7
Rhizosphere 75.68
Stem 0
Stem Tuber 0
Unclassified 4.05

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25159J45721_1000014 3300002987 Bacteria 147809
2 JGI25160J50197_1000020 3300003354 Bacteria 232739
3 JGI25161J50226_1000657 3300003374 Bacteria 13842
4 Ga0055526_1001886 3300003771 Bacteria 14532
5 Ga0055524_1056842 3300003775 Bacteria 840
6 Ga0055536_1000497 3300003781 Bacteria 27238
7 Ga0055530_10006853 3300003791 Bacteria 4943
8 Ga0055531_10024398 3300003794 Bacteria 2233
9 Ga0055543_1000047 3300004625 Bacteria 111073
10 Ga0065165_1000013 3300005262 Bacteria 301887
11 Ga0070690_100004115 3300005330 Bacteria 8054
12 Ga0070690_100356937 3300005330 Bacteria 1062
13 Ga0070709_10141004 3300005434 Bacteria 1656
14 Ga0070714_100021418 3300005435 Bacteria 5290
15 Ga0070713_100048957 3300005436 Bacteria 3484
16 Ga0070710_10298431 3300005437 Bacteria 1051
17 Ga0070710_10319201 3300005437 Bacteria 1019
18 Ga0068867_100363520 3300005459 Bacteria 1211
19 Ga0068855_100532692 3300005563 Bacteria 1273
20 Ga0068866_10570871 3300005718 Bacteria 759
21 Ga0068858_100010667 3300005842 Bacteria 8692
22 Ga0068858_100191460 3300005842 Bacteria 1933
23 Ga0075364_10121477 3300006051 Bacteria 1748
24 Ga0075429_100630773 3300006880 Bacteria 939
25 Ga0114129_10051217 3300009147 Bacteria 5798
26 Ga0105248_10466538 3300009177 Bacteria 1423
27 Ga0105237_10319022 3300009545 Bacteria 1557
28 Ga0105238_10157659 3300009551 Bacteria 2245
29 Ga0105249_10392127 3300009553 Bacteria 1417
30 Ga0157374_11542917 3300013296 Bacteria 688
31 Ga0157378_13168334 3300013297 Bacteria 511
32 Ga0157372_11793928 3300013307 Bacteria 705
33 Ga0157375_10429234 3300013308 Bacteria 1487
34 Ga0224712_10416868 3300022467 Bacteria 642
35 Ga0209436_104896 3300025208 Bacteria 3208
36 Ga0207425_1023475 3300025245 Bacteria 1290
37 Ga0209130_1000034 3300025284 Bacteria 302439
38 Ga0209676_1000482 3300025292 Bacteria 65372
39 Ga0209025_1000314 3300025294 Bacteria 107720
40 Ga0209564_1000013 3300025295 Bacteria 775755
41 Ga0209758_1057976 3300025297 Bacteria 1298
42 Ga0209050_1000646 3300025298 Bacteria 54050
43 Ga0209256_1004327 3300025299 Bacteria 9024
44 Ga0207426_1000006 3300025302 Bacteria 1025969
45 Ga0209051_1003817 3300025303 Bacteria 9639
46 Ga0209257_1002032 3300025304 Bacteria 21575
47 Ga0207692_10240462 3300025898 Bacteria 1081
48 Ga0207692_10329032 3300025898 Bacteria 937
49 Ga0207693_10568567 3300025915 Bacteria 883
50 Ga0207694_10007549 3300025924 Bacteria 8241
51 Ga0207659_10684319 3300025926 Bacteria 878
52 Ga0207700_10004803 3300025928 Bacteria 8020
53 Ga0207664_10097340 3300025929 Bacteria 2424
54 Ga0207686_10954156 3300025934 Bacteria 694
55 Ga0207665_11209557 3300025939 Bacteria 603
56 Ga0207711_10763429 3300025941 Bacteria 901
57 Ga0207689_10494894 3300025942 Bacteria 1024
58 Ga0207661_10406791 3300025944 Bacteria 1235
59 Ga0207667_10312881 3300025949 Bacteria 1604
60 Ga0268266_11989216 3300028379 Bacteria 555
61 Ga0265323_10005373 3300028653 Bacteria 5443
62 Ga0265323_10005755 3300028653 Bacteria 5248
63 Ga0265323_10005985 3300028653 Bacteria 5143
64 Ga0265323_10063999 3300028653 Bacteria 1272
65 Ga0265322_10000424 3300028654 Bacteria 17252
66 Ga0265338_10028220 3300028800 Bacteria 5603
67 Ga0265338_10067949 3300028800 Bacteria 3074
68 Ga0265324_10031511 3300029957 Bacteria 1857
69 Ga0265324_10034890 3300029957 Bacteria 1752
70 Ga0265330_10300903 3300031235 Bacteria 676
71 Ga0265328_10271501 3300031239 Bacteria 652
72 Ga0265320_10000176 3300031240 Bacteria 54264
73 Ga0265339_10000582 3300031249 Bacteria 28512
74 Ga0265327_10000066 3300031251 Bacteria 221705
75 Ga0265327_10044981 3300031251 Bacteria 2349
76 Ga0265316_10002851 3300031344 Bacteria 17688
77 Ga0265316_10006859 3300031344 Bacteria 10813
78 Ga0265316_10044517 3300031344 Bacteria 3530
79 Ga0265314_10041229 3300031711 Bacteria 3306
80 Ga0265342_10123300 3300031712 Bacteria 1457
81 Ga0373937_1525506 3300036401 Bacteria 616
82 Ga0436364_0879290 3300037853 Bacteria 821
83 Ga0436365_0502714 3300039437 Bacteria 956
84 Ga0436365_1641203 3300039437 Bacteria 1401
85 Ga0436360_0386559 3300039438 Bacteria 1649
86 Ga0436363_0641919 3300039450 Bacteria 1068
87 Ga0436362_0091078 3300039453 Bacteria 984
88 Ga0436362_1083023 3300039453 Bacteria 596
89 Ga0439438_020894 3300041405 Bacteria 1832
90 Ga0451791_1928343 3300041451 Bacteria 672
91 Ga0439435_0015538 3300042436 Bacteria 1896
92 Ga0439464_0203594 3300042439 Bacteria 632
93 Ga0451577_0984461 3300042876 Bacteria 758
94 Ga0466966_0547711 3300044684 Bacteria 696
95 Ga0466963_0432478 3300044694 Bacteria 928
96 Ga0466959_0078666 3300045049 Bacteria 2378
97 Ga0495656_0168502 3300046615 Bacteria 1069
98 Ga0495611_0372356 3300046648 Bacteria 654
99 Ga0495599_0419116 3300046678 Bacteria 796
100 Ga0495669_0392980 3300046684 Bacteria 672
101 Ga0495600_0950802 3300046809 Bacteria 505
102 Ga0495674_1137414 3300047319 Bacteria 593
103 Ga0496101_1485878 3300048904 Bacteria 528
104 Ga0496104_0856622 3300048907 Bacteria 814
105 Ga0496126_0058842 3300048929 Bacteria 3463
106 Ga0501031_0000091 3300049568 Bacteria 48610
107 Ga0501032_0011919 3300049569 Bacteria 6226
108 Ga0501033_0006522 3300049570 Bacteria 9131
109 Ga0501033_0021848 3300049570 Bacteria 4829
110 Ga0501033_0527427 3300049570 Bacteria 815
111 Ga0501033_1025591 3300049570 Bacteria 551
112 Ga0501036_0467704 3300049572 Bacteria 1050
113 Ga0501037_0054060 3300049573 Bacteria 2937
114 Ga0501038_0112163 3300049574 Bacteria 2258
115 Ga0501039_0213529 3300049575 Bacteria 1517
116 Ga0501043_0474158 3300049579 Bacteria 938
117 Ga0501046_0015215 3300049580 Bacteria 6469
118 Ga0501047_0001017 3300049581 Bacteria 28284
119 Ga0501047_0310117 3300049581 Bacteria 1419
120 Ga0501048_1225605 3300049582 Bacteria 540
121 Ga0501067_0051851 3300049583 Bacteria 2273
122 Ga0501073_0281226 3300049589 Bacteria 1148
123 Ga0501257_043302 3300049686 Bacteria 1109
124 Ga0501080_0693260 3300049742 Bacteria 899
125 Ga0501035_0026615 3300049822 Bacteria 5290
126 Ga0501035_0084285 3300049822 Bacteria 2803
127 Ga0501035_0913218 3300049822 Bacteria 695
128 Ga0501044_0000427 3300049823 Bacteria 52004
129 Ga0501044_0030341 3300049823 Bacteria 5700
130 nmdc:mga05p37_128084_c1 3300050507 Bacteria 3116
131 nmdc:mga05p37_7121_c1 3300050507 Bacteria 13185
132 nmdc:mga09592_2465_c1 3300050508 Bacteria 14931
133 nmdc:mga09592_293974_c1 3300050508 Bacteria 1408
134 nmdc:mga0qj67_25999_c1 3300050509 Bacteria 4529
135 nmdc:mga06r32_4477_c1 3300050510 Bacteria 12513
136 nmdc:mga0a205_598006_c1 3300050515 Bacteria 956
137 nmdc:mga0a205_9113_c1 3300050515 Bacteria 9057
138 Ga0495601_0002751 3300053077 Bacteria 9991
139 Ga0495595_0271600 3300053084 Bacteria 850
140 Ga0495619_0004469 3300053085 Bacteria 8927
141 Ga0495619_0259288 3300053085 Bacteria 1205
142 Ga0500627_0138649 3300053158 Bacteria 1099
143 Ga0466962_0561880 3300061719 Bacteria 580

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300009553 Ga0105249_10392127 Ga0105249_103921272 119
2 3300049582 Ga0501048_1225605 Ga0501048_1225605_67_450 127
3 iso_pu_bacteria 8005382845 8005388401 127
4 iso_pu_bacteria 8005395548 8005399209 127
5 iso_pu_bacteria 8018150411 8018154611 127
6 3300006051 Ga0075364_10121477 Ga0075364_101214771 130
7 3300031240 Ga0265320_10000176 Ga0265320_1000017634 130
8 3300031251 Ga0265327_10044981 Ga0265327_100449813 130
9 3300005330 Ga0070690_100356937 Ga0070690_1003569371 131
10 3300005437 Ga0070710_10298431 Ga0070710_102984312 131
11 3300005459 Ga0068867_100363520 Ga0068867_1003635202 131
12 3300005563 Ga0068855_100532692 Ga0068855_1005326922 131
13 3300005718 Ga0068866_10570871 Ga0068866_105708711 131
14 3300005842 Ga0068858_100010667 Ga0068858_1000106673 131
15 3300005842 Ga0068858_100191460 Ga0068858_1001914602 131
16 3300009545 Ga0105237_10319022 Ga0105237_103190222 131
17 3300009551 Ga0105238_10157659 Ga0105238_101576592 131
18 3300013308 Ga0157375_10429234 Ga0157375_104292342 131
19 3300022467 Ga0224712_10416868 Ga0224712_104168681 131
20 3300025898 Ga0207692_10329032 Ga0207692_103290321 131
21 3300025915 Ga0207693_10568567 Ga0207693_105685671 131
22 3300025924 Ga0207694_10007549 Ga0207694_100075492 131
23 3300025926 Ga0207659_10684319 Ga0207659_106843191 131
24 3300025934 Ga0207686_10954156 Ga0207686_109541562 131
25 3300025939 Ga0207665_11209557 Ga0207665_112095571 131
26 3300025949 Ga0207667_10312881 Ga0207667_103128812 131
27 3300028379 Ga0268266_11989216 Ga0268266_119892162 131
28 3300028800 Ga0265338_10028220 Ga0265338_100282204 131
29 3300029957 Ga0265324_10034890 Ga0265324_100348903 131
30 3300031249 Ga0265339_10000582 Ga0265339_1000058218 131
31 3300031251 Ga0265327_10000066 Ga0265327_1000006671 131
32 3300031344 Ga0265316_10006859 Ga0265316_100068598 131
33 3300031711 Ga0265314_10041229 Ga0265314_100412293 131
34 3300031712 Ga0265342_10123300 Ga0265342_101233002 131
35 3300036401 Ga0373937_1525506 Ga0373937_1525506_162_557 131
36 3300037853 Ga0436364_0879290 Ga0436364_0879290_33_428 131
37 3300039437 Ga0436365_0502714 Ga0436365_0502714_339_734 131
38 3300039437 Ga0436365_1641203 Ga0436365_1641203_658_1053 131
39 3300039438 Ga0436360_0386559 Ga0436360_0386559_724_1119 131
40 3300039453 Ga0436362_0091078 Ga0436362_0091078_165_560 131
41 3300039453 Ga0436362_1083023 Ga0436362_1083023_44_439 131
42 3300042876 Ga0451577_0984461 Ga0451577_0984461_329_724 131
43 3300044684 Ga0466966_0547711 Ga0466966_0547711_183_578 131
44 3300045049 Ga0466959_0078666 Ga0466959_0078666_132_527 131
45 3300046648 Ga0495611_0372356 Ga0495611_0372356_19_414 131
46 3300048907 Ga0496104_0856622 Ga0496104_0856622_151_546 131
47 3300048929 Ga0496126_0058842 Ga0496126_0058842_2187_2582 131
48 3300049568 Ga0501031_0000091 Ga0501031_0000091_6995_7444 131
49 3300049569 Ga0501032_0011919 Ga0501032_0011919_2597_3046 131
50 3300049570 Ga0501033_0006522 Ga0501033_0006522_6518_6967 131
51 3300049570 Ga0501033_0021848 Ga0501033_0021848_4402_4797 131
52 3300049570 Ga0501033_0527427 Ga0501033_0527427_119_514 131
53 3300049570 Ga0501033_1025591 Ga0501033_1025591_113_508 131
54 3300049572 Ga0501036_0467704 Ga0501036_0467704_629_1024 131
55 3300049573 Ga0501037_0054060 Ga0501037_0054060_304_753 131
56 3300049574 Ga0501038_0112163 Ga0501038_0112163_398_793 131
57 3300049575 Ga0501039_0213529 Ga0501039_0213529_189_638 131
58 3300049579 Ga0501043_0474158 Ga0501043_0474158_459_908 131
59 3300049580 Ga0501046_0015215 Ga0501046_0015215_61_456 131
60 3300049581 Ga0501047_0001017 Ga0501047_0001017_8692_9087 131
61 3300049583 Ga0501067_0051851 Ga0501067_0051851_517_918 131
62 3300049822 Ga0501035_0026615 Ga0501035_0026615_1017_1466 131
63 3300049822 Ga0501035_0084285 Ga0501035_0084285_533_928 131
64 3300049822 Ga0501035_0913218 Ga0501035_0913218_172_567 131
65 3300049823 Ga0501044_0000427 Ga0501044_0000427_49005_49454 131
66 3300049823 Ga0501044_0030341 Ga0501044_0030341_3624_4037 131
67 3300050515 nmdc:mga0a205_598006_c1 nmdc:mga0a205_598006_c1_44_445 131
68 3300053158 Ga0500627_0138649 Ga0500627_0138649_115_510 131
69 iso_pu_bacteria 2599185352 2600194369 131
70 iso_pu_bacteria 2643221723 2644676102 131
71 3300005330 Ga0070690_100004115 Ga0070690_1000041153 132
72 3300009177 Ga0105248_10466538 Ga0105248_104665382 132
73 3300013296 Ga0157374_11542917 Ga0157374_115429172 132
74 3300025941 Ga0207711_10763429 Ga0207711_107634292 132
75 3300025942 Ga0207689_10494894 Ga0207689_104948942 132
76 3300025944 Ga0207661_10406791 Ga0207661_104067912 132
77 3300029957 Ga0265324_10031511 Ga0265324_100315112 132
78 3300041451 Ga0451791_1928343 Ga0451791_1928343_66_464 132
79 3300046678 Ga0495599_0419116 Ga0495599_0419116_65_499 132
80 3300046809 Ga0495600_0950802 Ga0495600_0950802_65_463 132
81 3300048904 Ga0496101_1485878 Ga0496101_1485878_99_497 132
82 3300053077 Ga0495601_0002751 Ga0495601_0002751_4565_4999 132
83 3300053084 Ga0495595_0271600 Ga0495595_0271600_214_648 132
84 3300053085 Ga0495619_0004469 Ga0495619_0004469_4412_4846 132
85 3300013297 Ga0157378_13168334 Ga0157378_131683342 133
86 3300042436 Ga0439435_0015538 Ga0439435_0015538_1052_1453 133
87 3300042439 Ga0439464_0203594 Ga0439464_0203594_71_472 133
88 3300044694 Ga0466963_0432478 Ga0466963_0432478_208_609 133
89 3300049686 Ga0501257_043302 Ga0501257_043302_665_1066 133
90 3300050507 nmdc:mga05p37_128084_c1 nmdc:mga05p37_128084_c1_1090_1491 133
91 3300050508 nmdc:mga09592_2465_c1 nmdc:mga09592_2465_c1_10080_10481 133
92 3300050509 nmdc:mga0qj67_25999_c1 nmdc:mga0qj67_25999_c1_718_1119 133
93 3300050510 nmdc:mga06r32_4477_c1 nmdc:mga06r32_4477_c1_1968_2369 133
94 3300061719 Ga0466962_0561880 Ga0466962_0561880_37_438 133
95 3300049581 Ga0501047_0310117 Ga0501047_0310117_255_659 134
96 3300049742 Ga0501080_0693260 Ga0501080_0693260_36_440 134
97 3300002987 JGI25159J45721_1000014 JGI25159J45721_100001434 135
98 3300003354 JGI25160J50197_1000020 JGI25160J50197_100002034 135
99 3300003374 JGI25161J50226_1000657 JGI25161J50226_10006578 135
100 3300003771 Ga0055526_1001886 Ga0055526_100188611 135
101 3300003775 Ga0055524_1056842 Ga0055524_10568422 135
102 3300003781 Ga0055536_1000497 Ga0055536_100049719 135
103 3300003791 Ga0055530_10006853 Ga0055530_100068536 135
104 3300003794 Ga0055531_10024398 Ga0055531_100243983 135
105 3300004625 Ga0055543_1000047 Ga0055543_100004764 135
106 3300005262 Ga0065165_1000013 Ga0065165_1000013186 135
107 3300005434 Ga0070709_10141004 Ga0070709_101410042 135
108 3300005435 Ga0070714_100021418 Ga0070714_1000214184 135
109 3300005436 Ga0070713_100048957 Ga0070713_1000489574 135
110 3300005437 Ga0070710_10319201 Ga0070710_103192012 135
111 3300006880 Ga0075429_100630773 Ga0075429_1006307732 135
112 3300009147 Ga0114129_10051217 Ga0114129_100512173 135
113 3300013307 Ga0157372_11793928 Ga0157372_117939282 135
114 3300025208 Ga0209436_104896 Ga0209436_1048964 135
115 3300025245 Ga0207425_1023475 Ga0207425_10234752 135
116 3300025284 Ga0209130_1000034 Ga0209130_1000034181 135
117 3300025292 Ga0209676_1000482 Ga0209676_100048222 135
118 3300025294 Ga0209025_1000314 Ga0209025_100031443 135
119 3300025295 Ga0209564_1000013 Ga0209564_1000013180 135
120 3300025297 Ga0209758_1057976 Ga0209758_10579762 135
121 3300025298 Ga0209050_1000646 Ga0209050_10006469 135
122 3300025299 Ga0209256_1004327 Ga0209256_10043272 135
123 3300025302 Ga0207426_1000006 Ga0207426_1000006554 135
124 3300025303 Ga0209051_1003817 Ga0209051_10038179 135
125 3300025304 Ga0209257_1002032 Ga0209257_10020326 135
126 3300025898 Ga0207692_10240462 Ga0207692_102404622 135
127 3300025928 Ga0207700_10004803 Ga0207700_100048032 135
128 3300025929 Ga0207664_10097340 Ga0207664_100973404 135
129 3300028653 Ga0265323_10005373 Ga0265323_100053731 135
130 3300028653 Ga0265323_10005755 Ga0265323_100057553 135
131 3300028653 Ga0265323_10005985 Ga0265323_100059855 135
132 3300028653 Ga0265323_10063999 Ga0265323_100639992 135
133 3300028654 Ga0265322_10000424 Ga0265322_100004242 135
134 3300028800 Ga0265338_10067949 Ga0265338_100679492 135
135 3300031235 Ga0265330_10300903 Ga0265330_103009031 135
136 3300031239 Ga0265328_10271501 Ga0265328_102715011 135
137 3300031344 Ga0265316_10002851 Ga0265316_1000285114 135
138 3300031344 Ga0265316_10044517 Ga0265316_100445174 135
139 3300039450 Ga0436363_0641919 Ga0436363_0641919_547_954 135
140 3300041405 Ga0439438_020894 Ga0439438_020894_268_675 135
141 3300046615 Ga0495656_0168502 Ga0495656_0168502_402_812 135
142 3300046684 Ga0495669_0392980 Ga0495669_0392980_197_604 135
143 3300047319 Ga0495674_1137414 Ga0495674_1137414_133_540 135
144 3300049589 Ga0501073_0281226 Ga0501073_0281226_358_768 135
145 3300050507 nmdc:mga05p37_7121_c1 nmdc:mga05p37_7121_c1_5024_5434 135
146 3300050508 nmdc:mga09592_293974_c1 nmdc:mga09592_293974_c1_276_686 135
147 3300050515 nmdc:mga0a205_9113_c1 nmdc:mga0a205_9113_c1_8460_8870 135
148 3300053085 Ga0495619_0259288 Ga0495619_0259288_83_490 135

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07883

Cupin_2

Cupin domain

40

109

0.9

PF00190

Cupin_1

Cupin

27

129

0.86

PF02311

AraC_binding

AraC-like ligand binding domain

44

143

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
4bif-assembly2.cif.gz_H biochemical and structural characterisation of a novel manganese- dependent hydroxynitrile lyase from bacteria 0.9689 1 129
4uxa-assembly3.cif.gz_R improved variant of (r)-selective manganese-dependent hydroxynitrile lyase from bacteria 0.9677 1 130
4uxa-assembly3.cif.gz_R improved variant of (r)-selective manganese-dependent hydroxynitrile lyase from bacteria 0.9533 1 130
4bif-assembly2.cif.gz_H biochemical and structural characterisation of a novel manganese- dependent hydroxynitrile lyase from bacteria 0.9473 1 129
8awp-assembly1.cif.gz_A crystal structure of a manganese-containing cupin (tm1459) from thermotoga maritima, variant 208 (v19i/r23h/m38i/i60f/c106q) 0.92 1 109
ID Description Score Start End Superfamily
4bifA00 Mainly Beta;Sandwich;Jelly Rolls;Jelly Rolls 0.9701 1 129 2.60.120.10
4bifA00 Mainly Beta;Sandwich;Jelly Rolls;Jelly Rolls 0.9484 1 129 2.60.120.10
2f4pA00 Mainly Beta;Sandwich;Jelly Rolls;Jelly Rolls 0.8965 12 134 2.60.120.10
3bu7B00 Mainly Beta;Sandwich;Jelly Rolls;Jelly Rolls 0.893 37 109 2.60.120.10
af_P17410_9_96_2.60.120.10 Mainly Beta;Sandwich;Jelly Rolls;Jelly Rolls 0.8826 31 109 2.60.120.10
ID Description Score Start End GO Terms
AF-A0A659YKM7-F1-model_v4 deleted 1.003 41 126
AF-A0A0T7FD29-F1-model_v4 Cupin type-2 domain-containing protein 1.001 43 129
AF-A0A4Q6DG11-F1-model_v4 deleted 0.9996 37 129
AF-F3KSV7-F1-model_v4 Carboxymuconolactone decarboxylase 0.9986 43 129 GO:0051920
AF-A0A527ZL51-F1-model_v4 Cupin domain-containing protein 0.9985 34 130

Feature Viewer

pLDDT pTM Quality
91.88 0.85 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map