F202930

General Info

Members Datasets Scaffolds Average Seq Length
148 103 296 339

Family's Representative Sequence

Representative Sequence 3300007265|Ga0099794_10084659|Ga0099794_100846592
Length 350
Sequence MKIFVTGGAGFIGSNFIRYVLKAANNHAIINYDKLTYAGNLANLHSIADHPGYRFIKGDICDAAAAGAAMHGCDAVVHFAAESHVDRSIDEPAPAIQTNVTGTFTLLEVARRLAVSRFVHISTDEVYGDIPPDTFACEDSPLRPSSPYSASKAASDLLVLSYVRTYKFPALITRSSNNYGPYQFPEKFLSLMITNALDDKPLPIYGDGKQQRDWLHVEDNCRGILAVLERGKIGEVYNIGGSHLEENLAMARRLLRLTGKPESLLRHVNDRPGHDRRYALDSRKIENELGWKPAISLEDGVRQTIEWYKDNSKWVSDVRGCEYLSYYEKHYCENSSNTIAASDSKPPTRN

Samples

Sample ID Description Type Environment
1 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
2 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
3 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
4 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
5 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
6 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
7 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
8 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
9 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
10 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
11 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
12 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
13 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
14 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
15 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
16 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
17 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
18 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
19 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
20 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
21 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
22 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
23 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
24 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
25 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
26 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
27 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
28 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
29 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
30 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
31 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
32 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
33 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
34 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
35 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
36 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
37 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
38 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
39 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
40 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
52 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
55 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
56 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
57 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
58 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
59 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
60 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
61 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
62 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
63 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
64 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
65 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
66 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
67 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
68 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
69 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
70 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
71 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
72 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
73 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
74 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
75 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
76 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
77 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
78 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
79 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
80 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
81 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
82 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
83 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
84 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
85 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
86 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
87 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
88 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
89 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
90 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
91 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
92 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
93 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
94 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
95 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
96 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
98 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
99 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
100 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
101 2671180694 Paenibacillus sp. A3 Isolate Unclassified
102 3006393351 Streptomyces sp. SID4985 Isolate Unclassified
103 8056667051 Streptomyces sichuanensis SCA3-4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.97
Metatranscriptomes 0
Isolates 2.03

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.03
Nodule 0
Rhizoplane 0
Rhizosphere 83.11
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0099794_10084659 3300007265 Bacteria 1568
2 Ga0055535_1005686 3300003761 Bacteria 2674
3 Ga0055541_1001494 3300003841 Bacteria 5037
4 Ga0065712_10101135 3300005290 Bacteria 2043
5 Ga0065707_10008680 3300005295 Bacteria 3152
6 Ga0070666_10220823 3300005335 Bacteria 1337
7 Ga0070675_100119170 3300005354 Bacteria 2241
8 Ga0070671_100224663 3300005355 Bacteria 1593
9 Ga0070673_100028501 3300005364 Bacteria 4153
10 Ga0070688_100206592 3300005365 Bacteria 1377
11 Ga0070711_100390675 3300005439 Bacteria 1127
12 Ga0070679_100019809 3300005530 Bacteria 6550
13 Ga0070684_100077794 3300005535 Bacteria 2930
14 Ga0070672_100097265 3300005543 Bacteria 2383
15 Ga0070665_100096224 3300005548 Bacteria 2966
16 Ga0068855_100554014 3300005563 Bacteria 1244
17 Ga0068857_100120362 3300005577 Bacteria 2363
18 Ga0068856_100415114 3300005614 Bacteria 1366
19 Ga0068866_10052394 3300005718 Bacteria 2082
20 Ga0068863_100201515 3300005841 Bacteria 1915
21 Ga0068863_100244329 3300005841 Bacteria 1733
22 Ga0068860_100336622 3300005843 Bacteria 1483
23 Ga0070717_10029842 3300006028 Bacteria 4380
24 Ga0070717_10052795 3300006028 Bacteria 3350
25 Ga0070717_10095766 3300006028 Bacteria 2513
26 Ga0075428_100004742 3300006844 Bacteria 15051
27 Ga0075430_100009102 3300006846 Bacteria 8389
28 Ga0105240_10001614 3300009093 Bacteria 38227
29 Ga0105240_10404381 3300009093 Bacteria 1537
30 Ga0111539_10006653 3300009094 Bacteria 14890
31 Ga0111539_10073716 3300009094 Bacteria 4024
32 Ga0111539_10645220 3300009094 Bacteria 1233
33 Ga0105249_10088603 3300009553 Bacteria 2891
34 Ga0105239_10091720 3300010375 Bacteria 3353
35 Ga0105239_10305780 3300010375 Bacteria 1791
36 Ga0157374_10003874 3300013296 Bacteria 12561
37 Ga0157372_10468835 3300013307 Bacteria 1468
38 Ga0157375_10084368 3300013308 Bacteria 3225
39 Ga0163163_10090184 3300014325 Bacteria 3079
40 Ga0163163_10098365 3300014325 Bacteria 2947
41 Ga0157379_10055423 3300014968 Bacteria 3542
42 Ga0157376_10011010 3300014969 Bacteria 6646
43 Ga0157376_10210798 3300014969 Bacteria 1793
44 Ga0157376_10300710 3300014969 Bacteria 1519
45 Ga0157376_10375329 3300014969 Bacteria 1368
46 Ga0213874_10003059 3300021377 Bacteria 3670
47 Ga0213876_10017245 3300021384 Bacteria 3812
48 Ga0213875_10004561 3300021388 Bacteria 7564
49 Ga0213875_10035063 3300021388 Bacteria 2368
50 Ga0213875_10060837 3300021388 Bacteria 1766
51 Ga0213871_10012813 3300021441 Bacteria 1957
52 Ga0209258_103956 3300025242 Bacteria 2975
53 Ga0207643_10241613 3300025908 Bacteria 1110
54 Ga0207695_10003294 3300025913 Bacteria 22929
55 Ga0207695_10003468 3300025913 Bacteria 22191
56 Ga0207695_10246586 3300025913 Bacteria 1686
57 Ga0207664_10152017 3300025929 Bacteria 1967
58 Ga0207644_10056967 3300025931 Bacteria 2821
59 Ga0207691_10002001 3300025940 Bacteria 19937
60 Ga0207712_10061986 3300025961 Bacteria 2656
61 Ga0207703_10129392 3300026035 Bacteria 2178
62 Ga0207678_10013821 3300026067 Bacteria 7094
63 Ga0207641_10032894 3300026088 Bacteria 4308
64 Ga0207641_10304042 3300026088 Bacteria 1507
65 Ga0207641_10389816 3300026088 Bacteria 1336
66 Ga0207676_10156286 3300026095 Bacteria 1971
67 Ga0207683_10092542 3300026121 Bacteria 2694
68 Ga0207683_10152174 3300026121 Bacteria 2088
69 Ga0207428_10010062 3300027907 Bacteria 8466
70 Ga0268266_10012462 3300028379 Bacteria 7348
71 Ga0268264_10271058 3300028381 Bacteria 1586
72 Ga0265323_10000784 3300028653 Bacteria 17007
73 Ga0265324_10009593 3300029957 Bacteria 3771
74 Ga0265330_10012136 3300031235 Bacteria 4031
75 Ga0265320_10002223 3300031240 Bacteria 13608
76 Ga0265316_10003614 3300031344 Bacteria 15594
77 Ga0265316_10016503 3300031344 Bacteria 6400
78 Ga0265316_10032276 3300031344 Bacteria 4274
79 Ga0265314_10015692 3300031711 Bacteria 6002
80 Ga0265342_10094861 3300031712 Bacteria 1706
81 Ga0373954_0038076 3300035118 Bacteria 2236
82 Ga0373935_0010626 3300035692 Bacteria 5526
83 Ga0373933_0212108 3300035724 Bacteria 1241
84 Ga0373925_0068392 3300037068 Bacteria 2681
85 Ga0373925_0178917 3300037068 Bacteria 1678
86 Ga0436364_0187116 3300037853 Bacteria 4438
87 Ga0436364_0236212 3300037853 Bacteria 8899
88 Ga0436364_0546176 3300037853 Bacteria 8833
89 Ga0436364_0587740 3300037853 Bacteria 3623
90 Ga0436364_0741491 3300037853 Bacteria 3578
91 Ga0436364_0835596 3300037853 Bacteria 2326
92 Ga0436364_0880399 3300037853 Bacteria 4545
93 Ga0436364_0991316 3300037853 Bacteria 187962
94 Ga0436364_1237925 3300037853 Bacteria 1690
95 Ga0436364_1376020 3300037853 Bacteria 2117
96 Ga0436364_1388283 3300037853 Bacteria 8099
97 Ga0436365_0134859 3300039437 Bacteria 12602
98 Ga0436365_0195846 3300039437 Bacteria 1480
99 Ga0436365_0695711 3300039437 Bacteria 3282
100 Ga0436360_1083574 3300039438 Bacteria 2176
101 Ga0436362_0243123 3300039453 Bacteria 5780
102 Ga0453684_0184504 3300044712 Bacteria 2446
103 Ga0495592_0047868 3300046454 Bacteria 3183
104 Ga0495629_0106413 3300046459 Bacteria 1957
105 Ga0495651_0059189 3300046462 Bacteria 2938
106 Ga0495651_0071435 3300046462 Bacteria 2639
107 Ga0495580_0015334 3300046472 Bacteria 5782
108 Ga0495580_0147123 3300046472 Bacteria 1633
109 Ga0495582_0035953 3300046473 Bacteria 2724
110 Ga0495662_0011178 3300046476 Bacteria 4386
111 Ga0495594_0029807 3300046499 Bacteria 2950
112 Ga0495618_0213092 3300046514 Bacteria 1220
113 Ga0495628_0097863 3300046516 Bacteria 2266
114 Ga0495628_0190596 3300046516 Bacteria 1548
115 Ga0495630_0057686 3300046517 Bacteria 2910
116 Ga0495652_0095452 3300046529 Bacteria 2423
117 Ga0495645_0007046 3300046543 Bacteria 7822
118 Ga0495667_0021428 3300046559 Bacteria 4361
119 Ga0495635_0198052 3300046663 Bacteria 1363
120 Ga0495623_0089231 3300046679 Bacteria 1895
121 Ga0495613_0157908 3300046689 Bacteria 1615
122 Ga0495674_0035471 3300047319 Bacteria 4500
123 Ga0495674_0078590 3300047319 Bacteria 2834
124 Ga0495674_0116758 3300047319 Bacteria 2257
125 Ga0495675_0127074 3300047444 Bacteria 1586
126 Ga0495684_0009642 3300047471 Bacteria 7447
127 Ga0495684_0018454 3300047471 Bacteria 5375
128 Ga0495684_0039634 3300047471 Bacteria 3611
129 Ga0495684_0268582 3300047471 Bacteria 1235
130 Ga0495602_0045067 3300048088 Bacteria 3994
131 Ga0495602_0047906 3300048088 Bacteria 3846
132 Ga0495602_0159860 3300048088 Bacteria 1760
133 Ga0496126_0047732 3300048929 Bacteria 3919
134 Ga0501032_0258802 3300049569 Bacteria 1129
135 Ga0501034_0031346 3300049571 Bacteria 5401
136 Ga0501037_0133336 3300049573 Bacteria 1780
137 Ga0501047_0026093 3300049581 Bacteria 5619
138 Ga0501070_0104640 3300049586 Bacteria 2340
139 Ga0501035_0081083 3300049822 Bacteria 2864
140 Ga0501044_0002405 3300049823 Bacteria 21347
141 Ga0501044_0103622 3300049823 Bacteria 2860
142 Ga0501044_0182691 3300049823 Bacteria 2063
143 Ga0501045_0051085 3300049824 Bacteria 3017
144 nmdc:mga0qj67_41264_c1 3300050509 Bacteria 3629
145 nmdc:mga08y16_26227_c1 3300050511 Bacteria 6145
146 2673820621 2671180694 Bacteria 7506943
147 3006395736 3006393351 Bacteria 6615579
148 8056672898 8056667051 Bacteria 6953971
149 Ga0099794_10084659
150 Ga0055535_1005686
151 Ga0055541_1001494
152 Ga0065712_10101135
153 Ga0065707_10008680
154 Ga0070666_10220823
155 Ga0070675_100119170
156 Ga0070671_100224663
157 Ga0070673_100028501
158 Ga0070688_100206592
159 Ga0070711_100390675
160 Ga0070679_100019809
161 Ga0070684_100077794
162 Ga0070672_100097265
163 Ga0070665_100096224
164 Ga0068855_100554014
165 Ga0068857_100120362
166 Ga0068856_100415114
167 Ga0068866_10052394
168 Ga0068863_100201515
169 Ga0068863_100244329
170 Ga0068860_100336622
171 Ga0070717_10029842
172 Ga0070717_10052795
173 Ga0070717_10095766
174 Ga0075428_100004742
175 Ga0075430_100009102
176 Ga0105240_10001614
177 Ga0105240_10404381
178 Ga0111539_10006653
179 Ga0111539_10073716
180 Ga0111539_10645220
181 Ga0105249_10088603
182 Ga0105239_10091720
183 Ga0105239_10305780
184 Ga0157374_10003874
185 Ga0157372_10468835
186 Ga0157375_10084368
187 Ga0163163_10090184
188 Ga0163163_10098365
189 Ga0157379_10055423
190 Ga0157376_10011010
191 Ga0157376_10210798
192 Ga0157376_10300710
193 Ga0157376_10375329
194 Ga0213874_10003059
195 Ga0213876_10017245
196 Ga0213875_10004561
197 Ga0213875_10035063
198 Ga0213875_10060837
199 Ga0213871_10012813
200 Ga0209258_103956
201 Ga0207643_10241613
202 Ga0207695_10003294
203 Ga0207695_10003468
204 Ga0207695_10246586
205 Ga0207664_10152017
206 Ga0207644_10056967
207 Ga0207691_10002001
208 Ga0207712_10061986
209 Ga0207703_10129392
210 Ga0207678_10013821
211 Ga0207641_10032894
212 Ga0207641_10304042
213 Ga0207641_10389816
214 Ga0207676_10156286
215 Ga0207683_10092542
216 Ga0207683_10152174
217 Ga0207428_10010062
218 Ga0268266_10012462
219 Ga0268264_10271058
220 Ga0265323_10000784
221 Ga0265324_10009593
222 Ga0265330_10012136
223 Ga0265320_10002223
224 Ga0265316_10003614
225 Ga0265316_10016503
226 Ga0265316_10032276
227 Ga0265314_10015692
228 Ga0265342_10094861
229 Ga0373954_0038076
230 Ga0373935_0010626
231 Ga0373933_0212108
232 Ga0373925_0068392
233 Ga0373925_0178917
234 Ga0436364_0187116
235 Ga0436364_0236212
236 Ga0436364_0546176
237 Ga0436364_0587740
238 Ga0436364_0741491
239 Ga0436364_0835596
240 Ga0436364_0880399
241 Ga0436364_0991316
242 Ga0436364_1237925
243 Ga0436364_1376020
244 Ga0436364_1388283
245 Ga0436365_0134859
246 Ga0436365_0195846
247 Ga0436365_0695711
248 Ga0436360_1083574
249 Ga0436362_0243123
250 Ga0453684_0184504
251 Ga0495592_0047868
252 Ga0495629_0106413
253 Ga0495651_0059189
254 Ga0495651_0071435
255 Ga0495580_0015334
256 Ga0495580_0147123
257 Ga0495582_0035953
258 Ga0495662_0011178
259 Ga0495594_0029807
260 Ga0495618_0213092
261 Ga0495628_0097863
262 Ga0495628_0190596
263 Ga0495630_0057686
264 Ga0495652_0095452
265 Ga0495645_0007046
266 Ga0495667_0021428
267 Ga0495635_0198052
268 Ga0495623_0089231
269 Ga0495613_0157908
270 Ga0495674_0035471
271 Ga0495674_0078590
272 Ga0495674_0116758
273 Ga0495675_0127074
274 Ga0495684_0009642
275 Ga0495684_0018454
276 Ga0495684_0039634
277 Ga0495684_0268582
278 Ga0495602_0045067
279 Ga0495602_0047906
280 Ga0495602_0159860
281 Ga0496126_0047732
282 Ga0501032_0258802
283 Ga0501034_0031346
284 Ga0501037_0133336
285 Ga0501047_0026093
286 Ga0501070_0104640
287 Ga0501035_0081083
288 Ga0501044_0002405
289 Ga0501044_0103622
290 Ga0501044_0182691
291 Ga0501045_0051085
292 nmdc:mga0qj67_41264_c1
293 nmdc:mga08y16_26227_c1
294 2673820621
295 3006395736
296 8056672898

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

3

240

0.98

PF16363

GDP_Man_Dehyd

GDP-mannose 4,6 dehydratase

4

304

0.92

PF07993

NAD_binding_4

Male sterility protein

61

238

0.87

PF04321

RmlD_sub_bind

RmlD substrate binding domain

1

307

0.86

PF01073

3Beta_HSD

3-beta hydroxysteroid dehydrogenase/isomerase family

4

228

0.84

PF02719

Polysacc_synt_2

Polysaccharide biosynthesis protein

3

274

0.84

PF13460

NAD_binding_10

NAD(P)H-binding

7

163

0.78

Structural Annotation

Top 5 Hits

ID Description Score Start End
6bi4-assembly2.cif.gz_C 2.9 angstrom resolution crystal structure of dtdp-glucose 4,6-dehydratase (rfbb) from bacillus anthracis str. ames in complex with nad. 0.9632 1 315
6bi4-assembly2.cif.gz_B 2.9 angstrom resolution crystal structure of dtdp-glucose 4,6-dehydratase (rfbb) from bacillus anthracis str. ames in complex with nad. 0.9621 1 315
2hun-assembly1.cif.gz_B crystal structure of hypothetical protein ph0414 from pyrococcus horikoshii ot3 0.9605 2 315
6bi4-assembly2.cif.gz_C 2.9 angstrom resolution crystal structure of dtdp-glucose 4,6-dehydratase (rfbb) from bacillus anthracis str. ames in complex with nad. 0.951 1 315
1r6d-assembly1.cif.gz_A-2 crystal structure of desiv double mutant (dtdp-glucose 4,6-dehydratase) from streptomyces venezuelae with nad and dau bound 0.9505 4 315
ID Description Score Start End Superfamily
4egbB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9364 3 293 3.40.50.720
2hunB02 Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1;UDP-galactose 4-epimerase, domain 1 0.9335 178 315 3.90.25.10
4egbB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9276 3 293 3.40.50.720
af_Q54WS6_11_352_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9273 4 297 3.40.50.720
1r6dA02 Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1;UDP-galactose 4-epimerase, domain 1 0.9154 178 315 3.90.25.10
ID Description Score Start End GO Terms
AF-A0A351DKE6-F1-model_v4 deleted 0.9835 117 318
AF-A0A3C1VQ02-F1-model_v4 dTDP-glucose 4,6-dehydratase 0.9827 149 322
AF-A0A3D4EVE5-F1-model_v4 dTDP-glucose 4,6-dehydratase 0.9811 156 309
AF-A0A7C3TH40-F1-model_v4 NAD-dependent epimerase/dehydratase family protein 0.9805 116 316
AF-A0A3C0AIT4-F1-model_v4 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) 0.9787 1 317 GO:0008460
GO:0009225

Map