F201005

General Info

Members Datasets Scaffolds Average Seq Length
147 113 133 272

Family's Representative Sequence

Representative Sequence 3300037471|Ga0395905_0033133|Ga0395905_0033133_2809_3639
Length 276
Sequence MPDWVDTHCHLDAPEFAADRGDVRQRARNAGVTHCVIPAVEPAHFDAVRELAHAGGDAYALGIHPLRTPRAADEDLARVDEALAAHGGDPRLVAVGEIGLDHFAPGLDEARQELFYREQLRLARKHGLPVILHVRRSADALLKQLRRIDVGGGIAHAFNGSVQQANEFLRLGFKLGFGGVVTYERAHQVRRLAAELPLSAIVLETDAPDIPPHWLYATAAEREAGKPQGRNEPGELPRIASVLAQLRGVPPDELAQATRANAIAALPKLAGIIAAQ

Samples

Sample ID Description Type Environment
1 2585428058 Methylibium sp. CF468 Isolate Rhizosphere
2 2588253510 Rhizobacter sp. OV335 Isolate Rhizosphere
3 2643221592 Rhizobacter sp. Root16D2 Isolate Unclassified
4 2643221609 Acidovorax sp. Root217 Isolate Unclassified
5 2643221625 Rhizobacter sp. Root29 Isolate Unclassified
6 2643221645 Massilia sp. Root351 Isolate Unclassified
7 2643221648 Rhizobacter sp. Root1238 Isolate Unclassified
8 2643221664 Massilia sp. Root418 Isolate Unclassified
9 2738541280 Massilia sp. GV090 Isolate Unclassified
10 2738541300 Massilia sp. GV016 Isolate Unclassified
11 2738543018 Massilia sp. GV045 Isolate Unclassified
12 2738543030 Massilia sp. GV097 Isolate Unclassified
13 2857564685 Duganella sp. R-74599 Isolate Unclassified
14 2919476304 Duganella sp. 3397 Isolate Unclassified
15 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
16 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
17 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
18 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
19 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
20 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
21 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
22 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
23 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
24 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
25 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
26 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
27 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
28 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
29 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
30 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
31 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
32 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
37 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
38 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
39 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
40 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
41 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
42 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
43 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
44 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
45 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
46 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
47 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
48 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
49 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
50 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
51 3300042000 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z081617_5539 Metagenome Rhizosphere
52 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
53 3300042116 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0126F_E14_082316_1792 Metagenome Rhizosphere
54 3300042134 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_070716_126 Metagenome Rhizosphere
55 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
56 3300042532 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0126L_E14_070516_92 Metagenome Rhizosphere
57 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
58 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
59 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
60 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
61 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
62 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
63 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
64 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
65 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
66 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
67 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
68 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
69 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
70 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
71 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
72 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
73 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
74 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
75 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
76 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
77 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
78 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
79 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
80 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
81 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
82 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
83 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
84 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
85 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
86 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
87 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
88 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
89 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
90 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
91 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
92 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
93 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
94 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
95 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
96 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
97 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
98 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
100 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
101 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
102 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
103 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
104 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
105 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
106 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
107 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere
108 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
109 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
110 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
111 3300053145 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 endosphere Metagenome Endosphere
112 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
113 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 90.48
Metatranscriptomes 0
Isolates 9.52

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 19.73
Nodule 1.36
Rhizoplane 1.36
Rhizosphere 68.03
Stem 0
Stem Tuber 0
Unclassified 9.52

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0055524_1000151 3300003775 Bacteria 82351
2 Ga0055530_10009168 3300003791 Bacteria 3843
3 Ga0075365_10002551 3300006038 Bacteria 8982
4 Ga0075365_10006051 3300006038 Bacteria 6608
5 Ga0075363_100035782 3300006048 Bacteria 2601
6 Ga0075362_10066250 3300006177 Bacteria 1641
7 Ga0075366_10009260 3300006195 Bacteria 5498
8 Ga0099826_10000001 3300006948 Bacteria 1155201
9 Ga0157371_10000026 3300013102 Bacteria 274703
10 Ga0157380_10279851 3300014326 Bacteria 1526
11 Ga0182008_10032907 3300014497 Bacteria 2603
12 Ga0157376_10063189 3300014969 Bacteria 3118
13 Ga0182006_1028093 3300015261 Bacteria 2290
14 Ga0209673_1015673 3300025273 Bacteria 2866
15 Ga0209050_1000268 3300025298 Bacteria 111281
16 Ga0209256_1000007 3300025299 Bacteria 1136599
17 Ga0209051_1000173 3300025303 Bacteria 117170
18 Ga0209051_1006899 3300025303 Bacteria 6307
19 Ga0209257_1000096 3300025304 Bacteria 259390
20 Ga0207705_10167991 3300025909 Bacteria 1651
21 Ga0207705_10288680 3300025909 Bacteria 1257
22 Ga0207687_10011566 3300025927 Bacteria 5768
23 Ga0207689_10345814 3300025942 Bacteria 1236
24 Ga0207667_10621715 3300025949 Bacteria 1088
25 Ga0209282_1000001 3300027666 Bacteria 2450367
26 Ga0307517_10106190 3300028786 Bacteria 2174
27 Ga0307513_10189093 3300031456 Bacteria 1913
28 Ga0307408_100005812 3300031548 Bacteria 8209
29 Ga0307408_100061511 3300031548 Bacteria 2741
30 Ga0265314_10019681 3300031711 Bacteria 5223
31 Ga0265342_10026675 3300031712 Bacteria 3617
32 Ga0307406_10235883 3300031901 Bacteria 1369
33 Ga0307412_10394658 3300031911 Bacteria 1124
34 Ga0307416_100017127 3300032002 Bacteria 5058
35 Ga0307416_100211852 3300032002 Bacteria 1849
36 Ga0395899_0023401 3300037312 Bacteria 4678
37 Ga0395900_0007905 3300037418 Bacteria 10955
38 Ga0395900_0260263 3300037418 Bacteria 1733
39 Ga0395898_0003019 3300037466 Bacteria 19093
40 Ga0395905_0000025 3300037471 Bacteria 317571
41 Ga0395905_0001157 3300037471 Bacteria 33035
42 Ga0395905_0007893 3300037471 Bacteria 10528
43 Ga0395905_0033133 3300037471 Bacteria 4855
44 Ga0395905_0153554 3300037471 Bacteria 2165
45 Ga0395905_0297669 3300037471 Bacteria 1500
46 Ga0395901_0047228 3300038443 Bacteria 4470
47 Ga0451793_0774552 3300041452 Bacteria 3544
48 Ga0439437_008244 3300042000 Bacteria 1171
49 Ga0439449_0002125 3300042007 Bacteria 7778
50 Ga0450912_003882 3300042116 Bacteria 1087
51 Ga0450898_010632 3300042134 Bacteria 1494
52 Ga0439446_0006398 3300042156 Bacteria 3069
53 Ga0450893_0003179 3300042532 Bacteria 2579
54 Ga0466969_0095655 3300044656 Bacteria 1403
55 Ga0466966_0032090 3300044684 Bacteria 3406
56 Ga0466961_0066791 3300044693 Bacteria 2284
57 Ga0466970_0009569 3300044765 Bacteria 4903
58 Ga0466970_0058988 3300044765 Bacteria 2055
59 Ga0451576_0138170 3300045051 Bacteria 2541
60 Ga0495617_019172 3300046452 Bacteria 2313
61 Ga0495627_044510 3300046453 Bacteria 1354
62 Ga0495650_0000001 3300046471 Bacteria 1085492
63 Ga0495650_0028727 3300046471 Bacteria 2546
64 Ga0495650_0031832 3300046471 Bacteria 2367
65 Ga0495650_0053387 3300046471 Bacteria 1655
66 Ga0495585_0004552 3300046492 Bacteria 8966
67 Ga0495596_0024047 3300046500 Bacteria 2470
68 Ga0495607_0070821 3300046501 Bacteria 1947
69 Ga0495583_0001654 3300046506 Bacteria 21647
70 Ga0495583_0033861 3300046506 Bacteria 2453
71 Ga0495583_0035389 3300046506 Bacteria 2383
72 Ga0495606_0005743 3300046507 Bacteria 11731
73 Ga0495606_0047939 3300046507 Bacteria 2814
74 Ga0495606_0105653 3300046507 Bacteria 1706
75 Ga0495606_0167215 3300046507 Bacteria 1279
76 Ga0495610_0055307 3300046512 Bacteria 1913
77 Ga0495616_0001413 3300046513 Bacteria 16714
78 Ga0495631_0016982 3300046518 Bacteria 3452
79 Ga0495632_0000319 3300046519 Bacteria 46342
80 Ga0495632_0027292 3300046519 Bacteria 2992
81 Ga0495644_0056630 3300046523 Bacteria 1473
82 Ga0495642_0065727 3300046528 Bacteria 1510
83 Ga0495654_0017629 3300046530 Bacteria 3749
84 Ga0495609_0029196 3300046538 Bacteria 2512
85 Ga0495597_0006967 3300046542 Bacteria 5793
86 Ga0495633_0014109 3300046558 Bacteria 4188
87 Ga0495633_0035476 3300046558 Bacteria 2394
88 Ga0495668_0250158 3300046616 Bacteria 970
89 Ga0495625_0021041 3300046660 Bacteria 5028
90 Ga0495625_0242700 3300046660 Bacteria 1172
91 Ga0495659_0000262 3300046664 Bacteria 21388
92 Ga0495670_0012942 3300046691 Bacteria 4102
93 Ga0495671_0000379 3300046692 Bacteria 36536
94 Ga0495671_0001510 3300046692 Bacteria 15570
95 Ga0495649_0087502 3300046694 Bacteria 1662
96 Ga0495660_0000790 3300046810 Bacteria 23704
97 Ga0495660_0011621 3300046810 Bacteria 5107
98 Ga0495660_0063143 3300046810 Bacteria 1984
99 Ga0495660_0066427 3300046810 Bacteria 1923
100 Ga0495672_0000368 3300047320 Bacteria 57095
101 Ga0495683_0014015 3300047323 Bacteria 4177
102 Ga0495687_001264 3300047443 Bacteria 23973
103 Ga0495681_0031198 3300047470 Bacteria 2701
104 Ga0495686_0001624 3300047472 Bacteria 23531
105 Ga0495686_0004510 3300047472 Bacteria 11416
106 Ga0495626_0023616 3300048091 Bacteria 3025
107 Ga0496102_0053764 3300048905 Bacteria 3670
108 Ga0495678_000366 3300049459 Bacteria 46246
109 Ga0495678_000765 3300049459 Bacteria 29082
110 Ga0495678_013039 3300049459 Bacteria 3917
111 Ga0495678_020598 3300049459 Bacteria 2916
112 Ga0495678_083644 3300049459 Bacteria 1140
113 Ga0495682_0000725 3300049460 Bacteria 21395
114 Ga0501037_0184633 3300049573 Bacteria 1479
115 Ga0501047_0215365 3300049581 Bacteria 1778
116 Ga0501035_0315615 3300049822 Bacteria 1314
117 Ga0501044_0640866 3300049823 Bacteria 952
118 nmdc:mga03683_71020_c1 3300050489 Bacteria 1488
119 nmdc:mga0yw44_14290_c1 3300050492 Bacteria 4212
120 nmdc:mga0yw44_32219_c1 3300050492 Bacteria 3053
121 nmdc:mga0k408_113850_c1 3300050493 Bacteria 1600
122 Ga0500578_0000442 3300053086 Bacteria 50642
123 Ga0500644_0018565 3300053088 Bacteria 2040
124 Ga0500651_0050601 3300053093 Bacteria 2606
125 Ga0500618_000332 3300053125 Bacteria 34213
126 Ga0500628_016465 3300053129 Bacteria 1429
127 Ga0500642_0007889 3300053130 Bacteria 3605
128 Ga0500652_001008 3300053131 Bacteria 9197
129 Ga0500568_0051920 3300053139 Bacteria 1611
130 Ga0500586_000195 3300053145 Bacteria 11689
131 Ga0500604_0033127 3300053151 Bacteria 1526
132 Ga0500622_0000329 3300053156 Bacteria 47203
133 Ga0500622_0101924 3300053156 Bacteria 1412

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300037312 Ga0395899_0023401 Ga0395899_0023401_1402_2232 237
2 3300037418 Ga0395900_0007905 Ga0395900_0007905_1453_2283 237
3 3300037466 Ga0395898_0003019 Ga0395898_0003019_3765_4595 237
4 3300037471 Ga0395905_0007893 Ga0395905_0007893_6711_7541 237
5 3300038443 Ga0395901_0047228 Ga0395901_0047228_1483_2313 237
6 3300047472 Ga0495686_0001624 Ga0495686_0001624_14664_15467 239
7 3300042532 Ga0450893_0003179 Ga0450893_0003179_523_1422 248
8 3300049573 Ga0501037_0184633 Ga0501037_0184633_394_1215 256
9 3300049581 Ga0501047_0215365 Ga0501047_0215365_174_995 256
10 3300049822 Ga0501035_0315615 Ga0501035_0315615_228_1049 256
11 3300049823 Ga0501044_0640866 Ga0501044_0640866_50_871 256
12 iso_pu_bacteria 2585428058 2587733818 258
13 iso_pu_bacteria 2588253510 2588291646 258
14 iso_pu_bacteria 2643221592 2643972523 258
15 iso_pu_bacteria 2643221625 2644138469 258
16 iso_pu_bacteria 2643221648 2644273031 258
17 3300025909 Ga0207705_10167991 Ga0207705_101679912 259
18 3300031711 Ga0265314_10019681 Ga0265314_100196816 259
19 3300031712 Ga0265342_10026675 Ga0265342_100266754 259
20 3300014969 Ga0157376_10063189 Ga0157376_100631892 260
21 3300025927 Ga0207687_10011566 Ga0207687_100115666 260
22 3300025942 Ga0207689_10345814 Ga0207689_103458142 260
23 3300025949 Ga0207667_10621715 Ga0207667_106217151 260
24 3300042000 Ga0439437_008244 Ga0439437_008244_262_1092 260
25 3300042134 Ga0450898_010632 Ga0450898_010632_94_909 260
26 3300042156 Ga0439446_0006398 Ga0439446_0006398_1485_2300 260
27 iso_pu_bacteria 2857564685 2857566708 260
28 3300003791 Ga0055530_10009168 Ga0055530_100091684 261
29 3300006038 Ga0075365_10002551 Ga0075365_100025516 261
30 3300006038 Ga0075365_10006051 Ga0075365_100060512 261
31 3300006048 Ga0075363_100035782 Ga0075363_1000357823 261
32 3300006177 Ga0075362_10066250 Ga0075362_100662502 261
33 3300006195 Ga0075366_10009260 Ga0075366_100092603 261
34 3300014326 Ga0157380_10279851 Ga0157380_102798512 261
35 3300025273 Ga0209673_1015673 Ga0209673_10156732 261
36 3300025298 Ga0209050_1000268 Ga0209050_100026823 261
37 3300025303 Ga0209051_1000173 Ga0209051_100017338 261
38 3300025303 Ga0209051_1006899 Ga0209051_10068992 261
39 3300025304 Ga0209257_1000096 Ga0209257_100009647 261
40 3300025909 Ga0207705_10288680 Ga0207705_102886802 261
41 3300028786 Ga0307517_10106190 Ga0307517_101061902 261
42 3300031456 Ga0307513_10189093 Ga0307513_101890932 261
43 3300031548 Ga0307408_100061511 Ga0307408_1000615113 261
44 3300031901 Ga0307406_10235883 Ga0307406_102358831 261
45 3300031911 Ga0307412_10394658 Ga0307412_103946581 261
46 3300032002 Ga0307416_100017127 Ga0307416_1000171272 261
47 3300032002 Ga0307416_100211852 Ga0307416_1002118522 261
48 3300037418 Ga0395900_0260263 Ga0395900_0260263_307_1137 261
49 3300037471 Ga0395905_0000025 Ga0395905_0000025_207366_208196 261
50 3300037471 Ga0395905_0001157 Ga0395905_0001157_1119_1946 261
51 3300037471 Ga0395905_0033133 Ga0395905_0033133_2809_3639 261
52 3300037471 Ga0395905_0153554 Ga0395905_0153554_1126_1944 261
53 3300037471 Ga0395905_0297669 Ga0395905_0297669_104_937 261
54 3300041452 Ga0451793_0774552 Ga0451793_0774552_2590_3417 261
55 3300042007 Ga0439449_0002125 Ga0439449_0002125_1498_2382 261
56 3300042116 Ga0450912_003882 Ga0450912_003882_22_864 261
57 3300044656 Ga0466969_0095655 Ga0466969_0095655_409_1245 261
58 3300044684 Ga0466966_0032090 Ga0466966_0032090_2396_3226 261
59 3300044693 Ga0466961_0066791 Ga0466961_0066791_181_1011 261
60 3300044765 Ga0466970_0058988 Ga0466970_0058988_495_1325 261
61 3300045051 Ga0451576_0138170 Ga0451576_0138170_290_1120 261
62 3300046507 Ga0495606_0167215 Ga0495606_0167215_334_1161 261
63 3300046519 Ga0495632_0027292 Ga0495632_0027292_622_1449 261
64 3300050489 nmdc:mga03683_71020_c1 nmdc:mga03683_71020_c1_450_1439 261
65 3300050492 nmdc:mga0yw44_14290_c1 nmdc:mga0yw44_14290_c1_1338_2165 261
66 3300050492 nmdc:mga0yw44_32219_c1 nmdc:mga0yw44_32219_c1_1813_2637 261
67 3300050493 nmdc:mga0k408_113850_c1 nmdc:mga0k408_113850_c1_699_1526 261
68 3300053086 Ga0500578_0000442 Ga0500578_0000442_2162_2989 261
69 3300053088 Ga0500644_0018565 Ga0500644_0018565_554_1381 261
70 3300053093 Ga0500651_0050601 Ga0500651_0050601_886_1713 261
71 3300053129 Ga0500628_016465 Ga0500628_016465_52_879 261
72 3300053130 Ga0500642_0007889 Ga0500642_0007889_885_1712 261
73 3300053131 Ga0500652_001008 Ga0500652_001008_2431_3258 261
74 3300053139 Ga0500568_0051920 Ga0500568_0051920_241_1068 261
75 3300053151 Ga0500604_0033127 Ga0500604_0033127_652_1476 261
76 3300053156 Ga0500622_0000329 Ga0500622_0000329_37408_38235 261
77 3300053156 Ga0500622_0101924 Ga0500622_0101924_109_936 261
78 iso_pu_bacteria 2643221609 2644059569 262
79 iso_pu_bacteria 2643221645 2644253444 262
80 iso_pu_bacteria 2919476304 2919477968 262
81 3300046558 Ga0495633_0035476 Ga0495633_0035476_1169_1960 263
82 3300053125 Ga0500618_000332 Ga0500618_000332_3265_4056 263
83 iso_pu_bacteria 2643221664 2644355508 263
84 iso_pu_bacteria 2738541280 2738737370 263
85 iso_pu_bacteria 2738541300 2738841599 263
86 iso_pu_bacteria 2738543018 2739272470 263
87 iso_pu_bacteria 2738543030 2739341514 263
88 3300046512 Ga0495610_0055307 Ga0495610_0055307_872_1666 264
89 3300046558 Ga0495633_0014109 Ga0495633_0014109_1485_2279 264
90 3300053145 Ga0500586_000195 Ga0500586_000195_8776_9570 264
91 3300046471 Ga0495650_0028727 Ga0495650_0028727_1669_2469 266
92 3300046471 Ga0495650_0031832 Ga0495650_0031832_897_1706 266
93 3300046471 Ga0495650_0053387 Ga0495650_0053387_235_1050 266
94 3300049459 Ga0495678_013039 Ga0495678_013039_3047_3856 266
95 3300049459 Ga0495678_020598 Ga0495678_020598_1595_2407 266
96 3300003775 Ga0055524_1000151 Ga0055524_100015144 267
97 3300006948 Ga0099826_10000001 Ga0099826_10000001112 267
98 3300013102 Ga0157371_10000026 Ga0157371_100000267 267
99 3300014497 Ga0182008_10032907 Ga0182008_100329073 267
100 3300015261 Ga0182006_1028093 Ga0182006_10280931 267
101 3300025299 Ga0209256_1000007 Ga0209256_1000007939 267
102 3300027666 Ga0209282_1000001 Ga0209282_10000011251 267
103 3300031548 Ga0307408_100005812 Ga0307408_1000058122 267
104 3300044765 Ga0466970_0009569 Ga0466970_0009569_2139_2942 267
105 3300046452 Ga0495617_019172 Ga0495617_019172_980_1798 267
106 3300046453 Ga0495627_044510 Ga0495627_044510_133_942 267
107 3300046471 Ga0495650_0000001 Ga0495650_0000001_615833_616654 267
108 3300046492 Ga0495585_0004552 Ga0495585_0004552_6158_6979 267
109 3300046500 Ga0495596_0024047 Ga0495596_0024047_944_1753 267
110 3300046501 Ga0495607_0070821 Ga0495607_0070821_1094_1897 267
111 3300046506 Ga0495583_0001654 Ga0495583_0001654_4591_5400 267
112 3300046506 Ga0495583_0033861 Ga0495583_0033861_229_1038 267
113 3300046506 Ga0495583_0035389 Ga0495583_0035389_585_1394 267
114 3300046507 Ga0495606_0005743 Ga0495606_0005743_3458_4261 267
115 3300046507 Ga0495606_0047939 Ga0495606_0047939_1199_2002 267
116 3300046507 Ga0495606_0105653 Ga0495606_0105653_123_926 267
117 3300046513 Ga0495616_0001413 Ga0495616_0001413_13795_14604 267
118 3300046518 Ga0495631_0016982 Ga0495631_0016982_636_1445 267
119 3300046519 Ga0495632_0000319 Ga0495632_0000319_32814_33623 267
120 3300046523 Ga0495644_0056630 Ga0495644_0056630_241_1044 267
121 3300046528 Ga0495642_0065727 Ga0495642_0065727_640_1443 267
122 3300046530 Ga0495654_0017629 Ga0495654_0017629_1199_2002 267
123 3300046538 Ga0495609_0029196 Ga0495609_0029196_452_1255 267
124 3300046542 Ga0495597_0006967 Ga0495597_0006967_4072_4875 267
125 3300046616 Ga0495668_0250158 Ga0495668_0250158_111_920 267
126 3300046660 Ga0495625_0021041 Ga0495625_0021041_3967_4770 267
127 3300046660 Ga0495625_0242700 Ga0495625_0242700_74_883 267
128 3300046664 Ga0495659_0000262 Ga0495659_0000262_16355_17158 267
129 3300046691 Ga0495670_0012942 Ga0495670_0012942_794_1597 267
130 3300046692 Ga0495671_0000379 Ga0495671_0000379_16502_17305 267
131 3300046692 Ga0495671_0001510 Ga0495671_0001510_12715_13524 267
132 3300046694 Ga0495649_0087502 Ga0495649_0087502_253_1062 267
133 3300046810 Ga0495660_0000790 Ga0495660_0000790_13616_14419 267
134 3300046810 Ga0495660_0011621 Ga0495660_0011621_2295_3104 267
135 3300046810 Ga0495660_0063143 Ga0495660_0063143_859_1662 267
136 3300046810 Ga0495660_0066427 Ga0495660_0066427_700_1509 267
137 3300047320 Ga0495672_0000368 Ga0495672_0000368_2486_3289 267
138 3300047323 Ga0495683_0014015 Ga0495683_0014015_2468_3277 267
139 3300047443 Ga0495687_001264 Ga0495687_001264_12620_13429 267
140 3300047470 Ga0495681_0031198 Ga0495681_0031198_1423_2232 267
141 3300047472 Ga0495686_0004510 Ga0495686_0004510_3431_4234 267
142 3300048091 Ga0495626_0023616 Ga0495626_0023616_666_1475 267
143 3300048905 Ga0496102_0053764 Ga0496102_0053764_2634_3443 267
144 3300049459 Ga0495678_000366 Ga0495678_000366_12718_13527 267
145 3300049459 Ga0495678_000765 Ga0495678_000765_17416_18225 267
146 3300049459 Ga0495678_083644 Ga0495678_083644_116_919 267
147 3300049460 Ga0495682_0000725 Ga0495682_0000725_16683_17492 267

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01026

TatD_DNase

TatD related DNase

5

267

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
1zzm-assembly1.cif.gz_A crystal structure of yjjv, tatd homolog from escherichia coli k12, at 1.8 a resolution 0.9094 2 259
2y1h-assembly1.cif.gz_A crystal structure of the human tatd-domain protein 3 (tatdn3) 0.9067 2 264
2gzx-assembly2.cif.gz_B crystal structure of the tatd deoxyribonuclease mw0446 from staphylococcus aureus. northeast structural genomics consortium target zr237. 0.9023 3 258
1j6o-assembly1.cif.gz_A crystal structure of tatd-related deoxyribonuclease (tm0667) from thermotoga maritima at 1.8 a resolution 0.9004 2 258
2gzx-assembly2.cif.gz_B crystal structure of the tatd deoxyribonuclease mw0446 from staphylococcus aureus. northeast structural genomics consortium target zr237. 0.8922 3 258
ID Description Score Start End Superfamily
af_P39408_1_259_3.20.20.140 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.9224 2 260 3.20.20.140
af_Q58977_2_248_3.20.20.140 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.9202 2 260 3.20.20.140
af_P39408_1_259_3.20.20.140 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.9019 2 260 3.20.20.140
1j6oA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.8997 2 258 3.20.20.140
af_Q58977_2_248_3.20.20.140 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.8989 2 260 3.20.20.140
ID Description Score Start End GO Terms
AF-A0A7X7AGE4-F1-model_v4 deleted 0.9725 1 185
AF-A0A7X7AGE4-F1-model_v4 deleted 0.9673 1 185
AF-A0A3D1J1W1-F1-model_v4 DNAase 0.9611 1 264 GO:0016788
GO:0046872
AF-A0A3D1J1W1-F1-model_v4 DNAase 0.954 1 264 GO:0016788
GO:0046872
AF-A0A0T2YYW2-F1-model_v4 DNAase 0.9515 1 266 GO:0016788
GO:0046872

Feature Viewer

pLDDT pTM Quality
90.39 0.9 High
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Predicted Structure (AlphaFold2)

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