F200380

General Info

Members Datasets Scaffolds Average Seq Length
147 104 294 281

Family's Representative Sequence

Representative Sequence 3300013306|Ga0163162_10042987|Ga0163162_100429875
Length 310
Sequence LVTISVSKHRETDRQAFAKGAAAKRTRSTSIAGFCMSDGWIIIGAGRAERHYWLELWRYRELFRVLAWRDLSVRYKQTVIGVLWALIRPALTMLVLTVVFSRIAGLPSDGNAPYALMVFAAILPWTLFATGLSEASNSLINNANLITKVYFPRLIVPTATVVVAFVDFLLSFFILIAMMGWYRFWPDWRIVILPFFAMLAFLVSVGPALWISSLNVKYRDFRHVIPFIVQFGLYASPVGFSSSVVPPQWRLLYSLNPMVGVIDGFRWSLLKGQSQLFLPAIALSVTVGAAFLWFGIRQFRTAEKSFADLI

Samples

Sample ID Description Type Environment
1 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
2 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
5 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
6 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
7 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
8 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
9 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
10 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
11 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
12 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
13 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
14 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
15 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
16 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
17 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
18 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
19 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
20 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
21 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
22 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
23 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
24 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
25 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
26 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
27 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
28 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
29 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
30 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
31 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
32 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
33 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
34 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
35 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
36 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
37 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
38 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
39 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
40 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
41 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
42 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
43 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
44 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
45 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
46 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
47 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
48 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
49 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
50 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
70 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
71 3300030760 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
72 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
73 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
74 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
75 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
76 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
77 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
78 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
79 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
80 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
81 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
82 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
83 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
84 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
85 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
86 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
87 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
88 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
89 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
90 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
91 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
92 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
93 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
94 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
95 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
96 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
97 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
98 3300053727 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 endosphere Metagenome Endosphere
99 2824617872 Bradyrhizobium sp. HAMBI 2133 Isolate Unclassified
100 2824626560 Bradyrhizobium sp. HAMBI 2149 Isolate Unclassified
101 2824635225 Bradyrhizobium sp. HAMBI 2136 Isolate Unclassified
102 2824644064 Bradyrhizobium sp. HAMBI 2137 Isolate Unclassified
103 2824714736 Bradyrhizobium sp. HAMBI 2151 Isolate Unclassified
104 2824723954 Bradyrhizobium sp. HAMBI 2152 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 94.56
Metatranscriptomes 1.36
Isolates 4.08

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.76
Nodule 0
Rhizoplane 2.04
Rhizosphere 81.63
Stem 0
Stem Tuber 0
Unclassified 13.61

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0163162_10042987 3300013306 Bacteria 4523
2 Ga0065165_1018458 3300005262 Bacteria 2524
3 Ga0070658_10075668 3300005327 Bacteria 2762
4 Ga0068868_100284579 3300005338 Bacteria 1400
5 Ga0070714_100029427 3300005435 Bacteria 4566
6 Ga0070714_100116132 3300005435 Unclassified 2376
7 Ga0070713_100064632 3300005436 Unclassified 3071
8 Ga0070713_100194634 3300005436 Unclassified 1828
9 Ga0070713_100457751 3300005436 Unclassified 1199
10 Ga0070710_10128214 3300005437 Bacteria 1544
11 Ga0070711_100016783 3300005439 Unclassified 4654
12 Ga0070708_100420875 3300005445 Bacteria 1260
13 Ga0070662_100075910 3300005457 Bacteria 2490
14 Ga0070662_100216055 3300005457 Bacteria 1528
15 Ga0070662_100304861 3300005457 Bacteria 1295
16 Ga0070706_100026813 3300005467 Bacteria 5301
17 Ga0070706_100165411 3300005467 Bacteria 2065
18 Ga0070706_100303597 3300005467 Unclassified 1489
19 Ga0070707_100028557 3300005468 Bacteria 5310
20 Ga0070698_100003471 3300005471 Bacteria 17352
21 Ga0070698_100026460 3300005471 Bacteria 6039
22 Ga0070699_100005838 3300005518 Bacteria 10758
23 Ga0070697_100047659 3300005536 Bacteria 3474
24 Ga0070697_100063713 3300005536 Bacteria 3011
25 Ga0070697_100184020 3300005536 Unclassified 1772
26 Ga0070686_100354486 3300005544 Bacteria 1103
27 Ga0070693_100290460 3300005547 Bacteria 1098
28 Ga0068855_100001792 3300005563 Bacteria 26845
29 Ga0068855_100300152 3300005563 Bacteria 1779
30 Ga0068855_100382921 3300005563 Unclassified 1544
31 Ga0070664_100498355 3300005564 Bacteria 1122
32 Ga0068856_100007718 3300005614 Bacteria 10504
33 Ga0068856_100040586 3300005614 Bacteria 4572
34 Ga0068863_100452456 3300005841 Bacteria 1260
35 Ga0068863_100614240 3300005841 Bacteria 1077
36 Ga0081539_10001259 3300005985 Bacteria 44898
37 Ga0070717_10000843 3300006028 Bacteria 20295
38 Ga0070712_100068161 3300006175 Bacteria 2534
39 Ga0097621_100006372 3300006237 Bacteria 8376
40 Ga0097621_100069541 3300006237 Bacteria 2907
41 Ga0075370_10000088 3300006353 Bacteria 28442
42 Ga0099795_10027134 3300007788 Bacteria 1935
43 Ga0105240_10064546 3300009093 Bacteria 4549
44 Ga0111539_10184292 3300009094 Unclassified 2438
45 Ga0111539_10507373 3300009094 Unclassified 1405
46 Ga0105241_10128279 3300009174 Bacteria 2050
47 Ga0105248_10269122 3300009177 Bacteria 1918
48 Ga0105237_10266436 3300009545 Bacteria 1716
49 Ga0105238_10091403 3300009551 Bacteria 3031
50 Ga0105238_10192529 3300009551 Bacteria 2015
51 Ga0105249_10325247 3300009553 Bacteria 1550
52 Ga0099796_10015424 3300010159 Bacteria 2233
53 Ga0105239_10112889 3300010375 Bacteria 3013
54 Ga0105246_10277758 3300011119 Bacteria 1342
55 Ga0157369_10017424 3300013105 Bacteria 8072
56 Ga0157369_10336823 3300013105 Bacteria 1567
57 Ga0157374_10014100 3300013296 Bacteria 6987
58 Ga0157374_10042594 3300013296 Bacteria 4188
59 Ga0157374_10082419 3300013296 Bacteria 3054
60 Ga0157378_10011196 3300013297 Bacteria 7847
61 Ga0157378_10021466 3300013297 Bacteria 5679
62 Ga0163162_10270471 3300013306 Bacteria 1831
63 Ga0157372_10010945 3300013307 Bacteria 9655
64 Ga0157372_10664273 3300013307 Bacteria 1213
65 Ga0182008_10050624 3300014497 Unclassified 2062
66 Ga0157376_10117866 3300014969 Bacteria 2348
67 Ga0157376_10270814 3300014969 Bacteria 1595
68 Ga0213873_10000440 3300021358 Bacteria 6733
69 Ga0213872_10024819 3300021361 Bacteria 2756
70 Ga0213876_10000161 3300021384 Bacteria 70233
71 Ga0213876_10003797 3300021384 Bacteria 8568
72 Ga0213875_10000244 3300021388 Bacteria 54467
73 Ga0213875_10078554 3300021388 Bacteria 1539
74 Ga0213871_10024399 3300021441 Unclassified 1531
75 Ga0207426_1000889 3300025302 Bacteria 30581
76 Ga0207426_1003109 3300025302 Bacteria 9480
77 Ga0207692_10036483 3300025898 Bacteria 2398
78 Ga0207692_10164923 3300025898 Unclassified 1280
79 Ga0207705_10032285 3300025909 Bacteria 3741
80 Ga0207707_10006437 3300025912 Bacteria 10255
81 Ga0207695_10010093 3300025913 Bacteria 11596
82 Ga0207695_10184961 3300025913 Bacteria 2003
83 Ga0207671_10171607 3300025914 Bacteria 1685
84 Ga0207693_10009784 3300025915 Bacteria 7805
85 Ga0207693_10090143 3300025915 Bacteria 2403
86 Ga0207663_10052513 3300025916 Unclassified 2543
87 Ga0207663_10191920 3300025916 Bacteria 1467
88 Ga0207646_10006280 3300025922 Bacteria 12326
89 Ga0207694_10004277 3300025924 Bacteria 11178
90 Ga0207706_10125440 3300025933 Bacteria 2258
91 Ga0207706_10305675 3300025933 Bacteria 1385
92 Ga0207706_10684278 3300025933 Bacteria 877
93 Ga0207711_10147603 3300025941 Bacteria 2120
94 Ga0207661_10178387 3300025944 Bacteria 1854
95 Ga0207667_10001370 3300025949 Bacteria 30542
96 Ga0207667_10010098 3300025949 Bacteria 11064
97 Ga0207712_10408839 3300025961 Bacteria 1142
98 Ga0207668_10123656 3300025972 Bacteria 1963
99 Ga0207639_10023546 3300026041 Bacteria 4448
100 Ga0207702_10008820 3300026078 Bacteria 8502
101 Ga0207702_10029462 3300026078 Bacteria 4568
102 Ga0207648_10226896 3300026089 Bacteria 1661
103 Ga0207676_10098103 3300026095 Bacteria 2422
104 Ga0265337_1000786 3300028556 Bacteria 16701
105 Ga0265338_10002393 3300028800 Bacteria 28232
106 Ga0265762_1001385 3300030760 Bacteria 4398
107 Ga0265760_10031330 3300031090 Bacteria 1568
108 Ga0265332_10029580 3300031238 Bacteria 2395
109 Ga0265339_10166286 3300031249 Unclassified 1107
110 Ga0265313_10068978 3300031595 Bacteria 1632
111 Ga0307508_10002697 3300031616 Bacteria 18577
112 Ga0265342_10119251 3300031712 Bacteria 1487
113 Ga0373933_0207532 3300035724 Bacteria 1255
114 Ga0436364_0441676 3300037853 Bacteria 20289
115 Ga0436364_1097450 3300037853 Bacteria 76851
116 Ga0436364_1175981 3300037853 Bacteria 14748
117 Ga0436365_0042009 3300039437 Bacteria 49154
118 Ga0436360_0174104 3300039438 Unclassified 1415
119 Ga0436360_0242042 3300039438 Unclassified 1218
120 Ga0436360_0513403 3300039438 Bacteria 1845
121 Ga0436360_0995906 3300039438 Bacteria 2080
122 Ga0436361_0459503 3300039447 Unclassified 1054
123 Ga0436361_0667883 3300039447 Bacteria 2785
124 Ga0436363_1437497 3300039450 Bacteria 1842
125 Ga0436362_0409422 3300039453 Bacteria 7515
126 Ga0436362_0438345 3300039453 Unclassified 1027
127 Ga0495592_0097940 3300046454 Bacteria 2094
128 Ga0495630_0016038 3300046517 Bacteria 5476
129 Ga0495622_0005757 3300046557 Bacteria 5749
130 Ga0495674_0610144 3300047319 Unclassified 864
131 Ga0495680_0305669 3300047322 Bacteria 1116
132 Ga0496107_0451650 3300048910 Bacteria 955
133 Ga0496110_0098374 3300048913 Bacteria 2622
134 Ga0496112_0164171 3300048915 Bacteria 2187
135 Ga0496126_0003389 3300048929 Bacteria 20170
136 Ga0501034_0001855 3300049571 Bacteria 26803
137 nmdc:mga07m45_20_c1 3300050496 Bacteria 126269
138 Ga0495619_0048867 3300053085 Bacteria 2788
139 Ga0495619_0082166 3300053085 Bacteria 2171
140 Ga0500643_000003 3300053087 Bacteria 876659
141 Ga0500611_022179 3300053727 Bacteria 1221
142 2824620600 2824617872 Bacteria 8814715
143 2824630196 2824626560 Bacteria 8813858
144 2824636396 2824635225 Bacteria 8785348
145 2824644847 2824644064 Bacteria 8743947
146 2824715288 2824714736 Bacteria 8717648
147 2824724635 2824723954 Bacteria 8758240
148 Ga0163162_10042987
149 Ga0065165_1018458
150 Ga0070658_10075668
151 Ga0068868_100284579
152 Ga0070714_100029427
153 Ga0070714_100116132
154 Ga0070713_100064632
155 Ga0070713_100194634
156 Ga0070713_100457751
157 Ga0070710_10128214
158 Ga0070711_100016783
159 Ga0070708_100420875
160 Ga0070662_100075910
161 Ga0070662_100216055
162 Ga0070662_100304861
163 Ga0070706_100026813
164 Ga0070706_100165411
165 Ga0070706_100303597
166 Ga0070707_100028557
167 Ga0070698_100003471
168 Ga0070698_100026460
169 Ga0070699_100005838
170 Ga0070697_100047659
171 Ga0070697_100063713
172 Ga0070697_100184020
173 Ga0070686_100354486
174 Ga0070693_100290460
175 Ga0068855_100001792
176 Ga0068855_100300152
177 Ga0068855_100382921
178 Ga0070664_100498355
179 Ga0068856_100007718
180 Ga0068856_100040586
181 Ga0068863_100452456
182 Ga0068863_100614240
183 Ga0081539_10001259
184 Ga0070717_10000843
185 Ga0070712_100068161
186 Ga0097621_100006372
187 Ga0097621_100069541
188 Ga0075370_10000088
189 Ga0099795_10027134
190 Ga0105240_10064546
191 Ga0111539_10184292
192 Ga0111539_10507373
193 Ga0105241_10128279
194 Ga0105248_10269122
195 Ga0105237_10266436
196 Ga0105238_10091403
197 Ga0105238_10192529
198 Ga0105249_10325247
199 Ga0099796_10015424
200 Ga0105239_10112889
201 Ga0105246_10277758
202 Ga0157369_10017424
203 Ga0157369_10336823
204 Ga0157374_10014100
205 Ga0157374_10042594
206 Ga0157374_10082419
207 Ga0157378_10011196
208 Ga0157378_10021466
209 Ga0163162_10270471
210 Ga0157372_10010945
211 Ga0157372_10664273
212 Ga0182008_10050624
213 Ga0157376_10117866
214 Ga0157376_10270814
215 Ga0213873_10000440
216 Ga0213872_10024819
217 Ga0213876_10000161
218 Ga0213876_10003797
219 Ga0213875_10000244
220 Ga0213875_10078554
221 Ga0213871_10024399
222 Ga0207426_1000889
223 Ga0207426_1003109
224 Ga0207692_10036483
225 Ga0207692_10164923
226 Ga0207705_10032285
227 Ga0207707_10006437
228 Ga0207695_10010093
229 Ga0207695_10184961
230 Ga0207671_10171607
231 Ga0207693_10009784
232 Ga0207693_10090143
233 Ga0207663_10052513
234 Ga0207663_10191920
235 Ga0207646_10006280
236 Ga0207694_10004277
237 Ga0207706_10125440
238 Ga0207706_10305675
239 Ga0207706_10684278
240 Ga0207711_10147603
241 Ga0207661_10178387
242 Ga0207667_10001370
243 Ga0207667_10010098
244 Ga0207712_10408839
245 Ga0207668_10123656
246 Ga0207639_10023546
247 Ga0207702_10008820
248 Ga0207702_10029462
249 Ga0207648_10226896
250 Ga0207676_10098103
251 Ga0265337_1000786
252 Ga0265338_10002393
253 Ga0265762_1001385
254 Ga0265760_10031330
255 Ga0265332_10029580
256 Ga0265339_10166286
257 Ga0265313_10068978
258 Ga0307508_10002697
259 Ga0265342_10119251
260 Ga0373933_0207532
261 Ga0436364_0441676
262 Ga0436364_1097450
263 Ga0436364_1175981
264 Ga0436365_0042009
265 Ga0436360_0174104
266 Ga0436360_0242042
267 Ga0436360_0513403
268 Ga0436360_0995906
269 Ga0436361_0459503
270 Ga0436361_0667883
271 Ga0436363_1437497
272 Ga0436362_0409422
273 Ga0436362_0438345
274 Ga0495592_0097940
275 Ga0495630_0016038
276 Ga0495622_0005757
277 Ga0495674_0610144
278 Ga0495680_0305669
279 Ga0496107_0451650
280 Ga0496110_0098374
281 Ga0496112_0164171
282 Ga0496126_0003389
283 Ga0501034_0001855
284 nmdc:mga07m45_20_c1
285 Ga0495619_0048867
286 Ga0495619_0082166
287 Ga0500643_000003
288 Ga0500611_022179
289 2824620600
290 2824630196
291 2824636396
292 2824644847
293 2824715288
294 2824724635

MSA Aligner

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01061

ABC2_membrane

ABC-2 type transporter

61

270

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
7k2t-assembly1.cif.gz_B mg2+/atp-bound structure of the full-length wzmwzt o antigen abc transporter in lipid nanodiscs 0.8892 25 274
7k2t-assembly1.cif.gz_B mg2+/atp-bound structure of the full-length wzmwzt o antigen abc transporter in lipid nanodiscs 0.8792 25 274
8dku-assembly1.cif.gz_B cryoem structure of the a. aeolicus wzmwzt transporter bound to the native o antigen 0.8759 25 274
6oih-assembly1.cif.gz_D crystal structure of o-antigen polysaccharide abc-transporter 0.8626 25 272
6m96-assembly1.cif.gz_B-2 atp-bound conformation of the wzmwzt o antigen abc transporter 0.8619 25 274
ID Description Score Start End Superfamily
af_A0A2R8QMX4_332_689_3.40.1710.10 Alpha Beta;3-Layer(aba) Sandwich;abc type-2 transporter like fold;abc type-2 transporter like domain 0.5809 37 262 3.40.1710.10
af_A0A2R8QMX4_332_689_3.40.1710.10 Alpha Beta;3-Layer(aba) Sandwich;abc type-2 transporter like fold;abc type-2 transporter like domain 0.4915 37 262 3.40.1710.10
af_D4A8Z3_354_540_1.20.120.1770 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A); 0.4163 70 262 1.20.120.1770
af_D4A8Z3_354_540_1.20.120.1770 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A); 0.3942 70 262 1.20.120.1770
af_Q66JT7_234_356_1.20.120.1780 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);UbiA prenyltransferase 0.3805 80 195 1.20.120.1780
ID Description Score Start End GO Terms
AF-A0A519YM89-F1-model_v4 ABC transporter permease 0.9619 76 274 GO:0015920
GO:0016020
GO:0140359
AF-A0A2S7SUZ0-F1-model_v4 Transport permease protein 0.954 16 274 GO:0005886
GO:0015920
GO:0140359
AF-A0A1F2ZW44-F1-model_v4 Transport permease protein 0.9518 32 274 GO:0005886
GO:0015920
GO:0140359
AF-A0A1F2ZW44-F1-model_v4 Transport permease protein 0.9481 32 274 GO:0005886
GO:0015920
GO:0140359
AF-A0A0G0Q6F1-F1-model_v4 Transport permease protein 0.9469 22 274 GO:0015920
GO:0043190
GO:0140359

Map