F198837

General Info

Members Datasets Scaffolds Average Seq Length
146 92 146 481

Family's Representative Sequence

Representative Sequence 3300053077|Ga0495601_0017785|Ga0495601_0017785_980_2308
Length 442
Sequence MAPRVRFAPSPTGYLHVGGARTALFNWLFARRHGGTFVLRIEDTDAQRSSWDMVAGIVDGLRWLGLDWDEGPDVGGPHAPYFQSQRLERYQGRAAALVEAGKAYHHEGAVRFKVPPGQTRFHDLVHGEISFENEHIEDFVILRSDRQPTYHLSVVVDDVEMAITHVVRGDDHVSNTPKQILLYEAFGAPVPQFAHVPLIMGPDKKRLSKRHGATSVMEYPRLGYIAEGMVNFLALLGWSPGGDRELLSREELVELFTLEGISGGNAVFNVEKLDWFNQQQMARLPAAVLLARIEQRLRDAALWRGSLAGAEAAWIALVLALVTPRVKKLDQLVDELRPFLVDDPEIDPGAAAKYLTPEVRPVLLALADELARATAFDAGSLERVLRATAEGAALKAATLIHATRVAVTGRAVSAGLFDVLALLGRERVVHRLQRSADYTSAV

Samples

Sample ID Description Type Environment
1 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
2 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
3 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
4 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
5 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
6 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
7 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
8 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
9 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
10 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
11 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
12 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
13 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
14 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
15 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
16 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
17 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
18 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
19 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
20 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
21 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
22 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
23 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
24 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
25 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
26 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
27 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
28 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
29 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
30 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
31 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
32 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
33 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
34 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
35 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
36 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
52 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
54 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
55 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
56 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
57 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
58 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
59 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
60 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
61 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
62 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
63 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
64 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
65 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
66 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
67 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
68 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
69 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
70 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
71 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
72 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
73 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
74 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
75 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
76 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
77 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
78 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
79 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
80 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
81 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
82 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
83 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
84 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
85 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
86 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
87 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
88 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
89 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
90 3300059426 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 11_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
91 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
92 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.05
Nodule 0
Rhizoplane 0.68
Rhizosphere 97.26
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0065712_10073479 3300005290 Bacteria 4362
2 Ga0065715_10115290 3300005293 Bacteria 2420
3 Ga0065707_10002372 3300005295 Bacteria 8401
4 Ga0070690_100045484 3300005330 Bacteria 2788
5 Ga0070666_10027045 3300005335 Bacteria 3753
6 Ga0070689_100040829 3300005340 Bacteria 3558
7 Ga0070687_100016524 3300005343 Bacteria 3369
8 Ga0070669_100002548 3300005353 Bacteria 13169
9 Ga0070675_100056258 3300005354 Bacteria 3241
10 Ga0070673_100216394 3300005364 Bacteria 1656
11 Ga0070705_100038145 3300005440 Bacteria 2716
12 Ga0070700_100038498 3300005441 Bacteria 2915
13 Ga0070698_100086196 3300005471 Bacteria 3126
14 Ga0070686_100036050 3300005544 Bacteria 3059
15 Ga0070693_100006370 3300005547 Bacteria 5721
16 Ga0068852_100198087 3300005616 Bacteria 1899
17 Ga0068864_100163616 3300005618 Bacteria 2024
18 Ga0068858_100003864 3300005842 Bacteria 14800
19 Ga0068858_100020638 3300005842 Bacteria 6156
20 Ga0068858_100111549 3300005842 Bacteria 2554
21 Ga0068862_100190204 3300005844 Bacteria 1846
22 Ga0075366_10003546 3300006195 Bacteria 8250
23 Ga0075428_100014145 3300006844 Bacteria 8881
24 Ga0075428_100014746 3300006844 Bacteria 8681
25 Ga0075428_100019945 3300006844 Bacteria 7423
26 Ga0075428_100026835 3300006844 Bacteria 6377
27 Ga0075430_100022352 3300006846 Bacteria 5381
28 Ga0075430_100062008 3300006846 Bacteria 3141
29 Ga0075430_100082222 3300006846 Bacteria 2699
30 Ga0075431_100000768 3300006847 Bacteria 27809
31 Ga0075431_100068917 3300006847 Bacteria 3650
32 Ga0075433_10026951 3300006852 Bacteria 4871
33 Ga0075433_10058014 3300006852 Bacteria 3385
34 Ga0075433_10098900 3300006852 Bacteria 2583
35 Ga0075433_10155518 3300006852 Bacteria 2034
36 Ga0075429_100015929 3300006880 Bacteria 6510
37 Ga0075429_100019611 3300006880 Bacteria 5862
38 Ga0075429_100031770 3300006880 Bacteria 4588
39 Ga0075435_100009649 3300007076 Bacteria 7007
40 Ga0075435_100025255 3300007076 Bacteria 4623
41 Ga0111539_10003242 3300009094 Bacteria 21512
42 Ga0111539_10004203 3300009094 Bacteria 18892
43 Ga0111539_10092373 3300009094 Bacteria 3556
44 Ga0111539_10123195 3300009094 Bacteria 3038
45 Ga0111539_10151700 3300009094 Bacteria 2712
46 Ga0114129_10002992 3300009147 Bacteria 23660
47 Ga0114129_10008402 3300009147 Bacteria 14705
48 Ga0114129_10008730 3300009147 Bacteria 14450
49 Ga0114129_10020005 3300009147 Bacteria 9527
50 Ga0114129_10021898 3300009147 Bacteria 9072
51 Ga0114129_10027827 3300009147 Bacteria 8006
52 Ga0114129_10036441 3300009147 Bacteria 6945
53 Ga0114129_10161206 3300009147 Bacteria 3063
54 Ga0105248_10058830 3300009177 Bacteria 4316
55 Ga0105248_10078544 3300009177 Bacteria 3710
56 Ga0105249_10002451 3300009553 Bacteria 16095
57 Ga0105239_10138892 3300010375 Bacteria 2707
58 Ga0163163_10000001 3300014325 Bacteria 622185
59 Ga0157380_10013165 3300014326 Bacteria 6023
60 Ga0157380_10074804 3300014326 Bacteria 2751
61 Ga0157379_10015095 3300014968 Bacteria 6775
62 Ga0163161_10094090 3300017792 Bacteria 2221
63 Ga0207645_10015929 3300025907 Bacteria 4982
64 Ga0207662_10001281 3300025918 Bacteria 12101
65 Ga0207662_10013078 3300025918 Bacteria 4636
66 Ga0207650_10014212 3300025925 Bacteria 5530
67 Ga0207709_10056091 3300025935 Bacteria 2437
68 Ga0207669_10094079 3300025937 Bacteria 1960
69 Ga0207665_10095271 3300025939 Bacteria 2068
70 Ga0207691_10016438 3300025940 Bacteria 7025
71 Ga0207711_10036493 3300025941 Bacteria 4171
72 Ga0207711_10054812 3300025941 Bacteria 3422
73 Ga0207712_10013768 3300025961 Bacteria 5189
74 Ga0207640_10015278 3300025981 Bacteria 4441
75 Ga0207639_10124319 3300026041 Bacteria 2125
76 Ga0207648_10002257 3300026089 Bacteria 20849
77 Ga0207674_10012544 3300026116 Bacteria 9468
78 Ga0207675_100023587 3300026118 Bacteria 5725
79 Ga0207698_10020410 3300026142 Bacteria 4560
80 Ga0207428_10001194 3300027907 Bacteria 27921
81 Ga0207428_10010455 3300027907 Bacteria 8287
82 Ga0268265_10055188 3300028380 Bacteria 3018
83 Ga0307408_100146088 3300031548 Bacteria 1861
84 Ga0307416_100009002 3300032002 Bacteria 6495
85 Ga0307416_100146011 3300032002 Bacteria 2160
86 Ga0307411_10033650 3300032005 Bacteria 3181
87 Ga0373935_0032703 3300035692 Bacteria 3233
88 Ga0373937_0002510 3300036401 Bacteria 15242
89 Ga0439446_0007839 3300042156 Bacteria 2816
90 Ga0439435_0004709 3300042436 Bacteria 2955
91 Ga0439435_0017074 3300042436 Unclassified 1830
92 Ga0451577_0190719 3300042876 Bacteria 1849
93 Ga0496114_0077851 3300048917 Bacteria 2797
94 Ga0501031_0079952 3300049568 Bacteria 2131
95 Ga0501033_0048752 3300049570 Bacteria 3146
96 Ga0501036_0015778 3300049572 Bacteria 6311
97 Ga0501036_0202838 3300049572 Bacteria 1668
98 Ga0501040_0066658 3300049576 Bacteria 2480
99 Ga0501041_0024409 3300049577 Bacteria 3629
100 Ga0501042_0047913 3300049578 Bacteria 3047
101 Ga0501046_0099600 3300049580 Bacteria 2231
102 Ga0501048_0054647 3300049582 Bacteria 2837
103 Ga0501067_0052480 3300049583 Bacteria 2259
104 Ga0501068_0053951 3300049584 Bacteria 2435
105 Ga0501071_0003392 3300049587 Bacteria 9953
106 Ga0501071_0034635 3300049587 Bacteria 3595
107 Ga0501075_0004210 3300049591 Bacteria 9718
108 Ga0501075_0060376 3300049591 Bacteria 2857
109 Ga0501075_0172453 3300049591 Bacteria 1651
110 Ga0501076_0003963 3300049592 Bacteria 10452
111 Ga0501079_0053628 3300049741 Bacteria 3110
112 Ga0501079_0124518 3300049741 Bacteria 2005
113 Ga0501081_0085648 3300049743 Bacteria 2212
114 Ga0501045_0008927 3300049824 Bacteria 7000
115 nmdc:mga0k408_75292_c1 3300050493 Bacteria 1972
116 nmdc:mga0k408_75852_c1 3300050493 Bacteria 1965
117 nmdc:mga05p37_30093_c1 3300050507 Bacteria 6625
118 nmdc:mga05p37_34_c1 3300050507 Bacteria 111954
119 nmdc:mga05p37_362762_c1 3300050507 Bacteria 1703
120 nmdc:mga05p37_38832_c1 3300050507 Bacteria 5841
121 nmdc:mga05p37_392_c2 3300050507 Bacteria 15720
122 nmdc:mga05p37_648_c1 3300050507 Bacteria 38499
123 nmdc:mga09592_42744_c1 3300050508 Bacteria 3812
124 nmdc:mga09592_64864_c1 3300050508 Bacteria 3092
125 nmdc:mga0qj67_137108_c1 3300050509 Bacteria 1983
126 nmdc:mga0qj67_8782_c1 3300050509 Bacteria 7500
127 nmdc:mga06r32_15340_c1 3300050510 Bacteria 6961
128 nmdc:mga06r32_158242_c1 3300050510 Bacteria 2247
129 nmdc:mga06r32_28718_c1 3300050510 Bacteria 5208
130 nmdc:mga06r32_6760_c1 3300050510 Bacteria 10310
131 nmdc:mga08y16_1371_c1 3300050511 Bacteria 24337
132 nmdc:mga08y16_82462_c1 3300050511 Bacteria 3352
133 nmdc:mga08y16_8536_c1 3300050511 Bacteria 10733
134 nmdc:mga0n895_23633_c1 3300050512 Bacteria 5780
135 nmdc:mga0a205_14159_c1 3300050515 Bacteria 7441
136 nmdc:mga0a205_16786_c1 3300050515 Bacteria 6856
137 nmdc:mga0a205_76240_c1 3300050515 Bacteria 3240
138 Ga0495601_0017785 3300053077 Bacteria 4319
139 Ga0501084_0023613 3300054114 Bacteria 5129
140 Ga0501084_0105676 3300054114 Unclassified 2365
141 Ga0590071_001506 3300059421 Bacteria 6125
142 Ga0590071_002567 3300059421 Bacteria 4570
143 Ga0590075_000420 3300059424 Bacteria 11479
144 Ga0590077_000478 3300059426 Bacteria 11269
145 Ga0501082_0151333 3300060353 Bacteria 2015
146 Ga0530510_0106697 3300061734 Bacteria 2050

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049591 Ga0501075_0172453 Ga0501075_0172453_26_1315 428
2 3300050507 nmdc:mga05p37_34_c1 nmdc:mga05p37_34_c1_92349_93740 438
3 3300035692 Ga0373935_0032703 Ga0373935_0032703_1659_2987 442
4 3300036401 Ga0373937_0002510 Ga0373937_0002510_12119_13447 442
5 3300053077 Ga0495601_0017785 Ga0495601_0017785_980_2308 442
6 3300006844 Ga0075428_100014746 Ga0075428_1000147462 452
7 3300009094 Ga0111539_10123195 Ga0111539_101231952 452
8 3300009147 Ga0114129_10036441 Ga0114129_100364414 452
9 3300050507 nmdc:mga05p37_38832_c1 nmdc:mga05p37_38832_c1_509_1963 452
10 3300050508 nmdc:mga09592_64864_c1 nmdc:mga09592_64864_c1_1099_2553 452
11 3300050511 nmdc:mga08y16_82462_c1 nmdc:mga08y16_82462_c1_611_2065 452
12 3300026116 Ga0207674_10012544 Ga0207674_1001254410 457
13 3300049583 Ga0501067_0052480 Ga0501067_0052480_825_2201 458
14 3300049578 Ga0501042_0047913 Ga0501042_0047913_254_1708 460
15 3300049587 Ga0501071_0003392 Ga0501071_0003392_933_2387 460
16 3300005295 Ga0065707_10002372 Ga0065707_100023724 461
17 3300006852 Ga0075433_10058014 Ga0075433_100580142 461
18 3300009147 Ga0114129_10002992 Ga0114129_1000299221 461
19 3300042436 Ga0439435_0017074 Ga0439435_0017074_119_1525 467
20 3300014326 Ga0157380_10013165 Ga0157380_100131653 469
21 3300009147 Ga0114129_10020005 Ga0114129_100200056 470
22 3300050507 nmdc:mga05p37_392_c2 nmdc:mga05p37_392_c2_8807_10222 470
23 3300017792 Ga0163161_10094090 Ga0163161_100940902 471
24 3300005471 Ga0070698_100086196 Ga0070698_1000861962 477
25 3300005618 Ga0068864_100163616 Ga0068864_1001636162 481
26 3300005842 Ga0068858_100003864 Ga0068858_1000038643 481
27 3300009177 Ga0105248_10058830 Ga0105248_100588302 481
28 3300014325 Ga0163163_10000001 Ga0163163_10000001137 481
29 3300025941 Ga0207711_10036493 Ga0207711_100364932 481
30 3300048917 Ga0496114_0077851 Ga0496114_0077851_848_2296 481
31 3300005293 Ga0065715_10115290 Ga0065715_101152901 482
32 3300014326 Ga0157380_10074804 Ga0157380_100748043 482
33 3300032002 Ga0307416_100009002 Ga0307416_1000090022 482
34 3300042436 Ga0439435_0004709 Ga0439435_0004709_67_1518 482
35 3300049591 Ga0501075_0060376 Ga0501075_0060376_343_1794 482
36 3300050510 nmdc:mga06r32_158242_c1 nmdc:mga06r32_158242_c1_119_1570 482
37 3300005353 Ga0070669_100002548 Ga0070669_1000025489 483
38 3300005354 Ga0070675_100056258 Ga0070675_1000562583 483
39 3300005441 Ga0070700_100038498 Ga0070700_1000384982 483
40 3300006195 Ga0075366_10003546 Ga0075366_100035465 483
41 3300006844 Ga0075428_100026835 Ga0075428_1000268355 483
42 3300006846 Ga0075430_100062008 Ga0075430_1000620084 483
43 3300006852 Ga0075433_10098900 Ga0075433_100989003 483
44 3300006852 Ga0075433_10155518 Ga0075433_101555181 483
45 3300006880 Ga0075429_100031770 Ga0075429_1000317704 483
46 3300007076 Ga0075435_100009649 Ga0075435_1000096491 483
47 3300009094 Ga0111539_10004203 Ga0111539_100042035 483
48 3300009094 Ga0111539_10092373 Ga0111539_100923732 483
49 3300009147 Ga0114129_10021898 Ga0114129_100218982 483
50 3300009147 Ga0114129_10027827 Ga0114129_100278275 483
51 3300009147 Ga0114129_10161206 Ga0114129_101612062 483
52 3300009553 Ga0105249_10002451 Ga0105249_1000245116 483
53 3300025925 Ga0207650_10014212 Ga0207650_100142125 483
54 3300025961 Ga0207712_10013768 Ga0207712_100137685 483
55 3300027907 Ga0207428_10010455 Ga0207428_100104553 483
56 3300049570 Ga0501033_0048752 Ga0501033_0048752_183_1640 483
57 3300049572 Ga0501036_0202838 Ga0501036_0202838_149_1603 483
58 3300049576 Ga0501040_0066658 Ga0501040_0066658_21_1478 483
59 3300049577 Ga0501041_0024409 Ga0501041_0024409_2067_3524 483
60 3300049580 Ga0501046_0099600 Ga0501046_0099600_182_1639 483
61 3300049582 Ga0501048_0054647 Ga0501048_0054647_1231_2688 483
62 3300049584 Ga0501068_0053951 Ga0501068_0053951_237_1694 483
63 3300049587 Ga0501071_0034635 Ga0501071_0034635_133_1590 483
64 3300049591 Ga0501075_0004210 Ga0501075_0004210_3549_5006 483
65 3300049592 Ga0501076_0003963 Ga0501076_0003963_2979_4436 483
66 3300049741 Ga0501079_0053628 Ga0501079_0053628_1537_2994 483
67 3300050493 nmdc:mga0k408_75292_c1 nmdc:mga0k408_75292_c1_161_1615 483
68 3300050493 nmdc:mga0k408_75852_c1 nmdc:mga0k408_75852_c1_97_1551 483
69 3300050507 nmdc:mga05p37_30093_c1 nmdc:mga05p37_30093_c1_3873_5327 483
70 3300050507 nmdc:mga05p37_362762_c1 nmdc:mga05p37_362762_c1_101_1564 483
71 3300050509 nmdc:mga0qj67_137108_c1 nmdc:mga0qj67_137108_c1_219_1673 483
72 3300050510 nmdc:mga06r32_6760_c1 nmdc:mga06r32_6760_c1_3656_5110 483
73 3300050511 nmdc:mga08y16_8536_c1 nmdc:mga08y16_8536_c1_5880_7334 483
74 3300050512 nmdc:mga0n895_23633_c1 nmdc:mga0n895_23633_c1_2231_3685 483
75 3300050515 nmdc:mga0a205_14159_c1 nmdc:mga0a205_14159_c1_5088_6542 483
76 3300050515 nmdc:mga0a205_76240_c1 nmdc:mga0a205_76240_c1_510_1970 483
77 3300054114 Ga0501084_0023613 Ga0501084_0023613_3422_4879 483
78 3300054114 Ga0501084_0105676 Ga0501084_0105676_94_1548 483
79 3300059421 Ga0590071_002567 Ga0590071_002567_1914_3368 483
80 3300059424 Ga0590075_000420 Ga0590075_000420_8020_9474 483
81 3300059426 Ga0590077_000478 Ga0590077_000478_7980_9434 483
82 3300060353 Ga0501082_0151333 Ga0501082_0151333_17_1474 483
83 3300006844 Ga0075428_100014145 Ga0075428_1000141455 484
84 3300006844 Ga0075428_100019945 Ga0075428_1000199456 484
85 3300006846 Ga0075430_100022352 Ga0075430_1000223522 484
86 3300006846 Ga0075430_100082222 Ga0075430_1000822222 484
87 3300006847 Ga0075431_100000768 Ga0075431_10000076832 484
88 3300006847 Ga0075431_100068917 Ga0075431_1000689172 484
89 3300006880 Ga0075429_100015929 Ga0075429_1000159295 484
90 3300006880 Ga0075429_100019611 Ga0075429_1000196114 484
91 3300009094 Ga0111539_10003242 Ga0111539_1000324215 484
92 3300009094 Ga0111539_10151700 Ga0111539_101517002 484
93 3300009147 Ga0114129_10008402 Ga0114129_1000840210 484
94 3300009147 Ga0114129_10008730 Ga0114129_100087304 484
95 3300025937 Ga0207669_10094079 Ga0207669_100940791 484
96 3300025939 Ga0207665_10095271 Ga0207665_100952711 484
97 3300026118 Ga0207675_100023587 Ga0207675_1000235872 484
98 3300027907 Ga0207428_10001194 Ga0207428_1000119414 484
99 3300031548 Ga0307408_100146088 Ga0307408_1001460882 484
100 3300049568 Ga0501031_0079952 Ga0501031_0079952_106_1563 484
101 3300049572 Ga0501036_0015778 Ga0501036_0015778_1749_3206 484
102 3300049741 Ga0501079_0124518 Ga0501079_0124518_322_1779 484
103 3300049743 Ga0501081_0085648 Ga0501081_0085648_684_2141 484
104 3300049824 Ga0501045_0008927 Ga0501045_0008927_5035_6492 484
105 3300050507 nmdc:mga05p37_648_c1 nmdc:mga05p37_648_c1_13990_15447 484
106 3300050508 nmdc:mga09592_42744_c1 nmdc:mga09592_42744_c1_2272_3729 484
107 3300050509 nmdc:mga0qj67_8782_c1 nmdc:mga0qj67_8782_c1_3075_4532 484
108 3300050510 nmdc:mga06r32_15340_c1 nmdc:mga06r32_15340_c1_2883_4340 484
109 3300050510 nmdc:mga06r32_28718_c1 nmdc:mga06r32_28718_c1_1999_3456 484
110 3300050511 nmdc:mga08y16_1371_c1 nmdc:mga08y16_1371_c1_16750_18207 484
111 3300059421 Ga0590071_001506 Ga0590071_001506_3110_4570 484
112 3300005290 Ga0065712_10073479 Ga0065712_100734792 485
113 3300005330 Ga0070690_100045484 Ga0070690_1000454842 485
114 3300005335 Ga0070666_10027045 Ga0070666_100270453 485
115 3300005340 Ga0070689_100040829 Ga0070689_1000408291 485
116 3300005343 Ga0070687_100016524 Ga0070687_1000165243 485
117 3300005364 Ga0070673_100216394 Ga0070673_1002163942 485
118 3300005440 Ga0070705_100038145 Ga0070705_1000381452 485
119 3300005544 Ga0070686_100036050 Ga0070686_1000360501 485
120 3300005547 Ga0070693_100006370 Ga0070693_1000063704 485
121 3300005616 Ga0068852_100198087 Ga0068852_1001980871 485
122 3300005842 Ga0068858_100020638 Ga0068858_1000206384 485
123 3300005842 Ga0068858_100111549 Ga0068858_1001115491 485
124 3300005844 Ga0068862_100190204 Ga0068862_1001902041 485
125 3300006852 Ga0075433_10026951 Ga0075433_100269513 485
126 3300007076 Ga0075435_100025255 Ga0075435_1000252551 485
127 3300009177 Ga0105248_10078544 Ga0105248_100785444 485
128 3300010375 Ga0105239_10138892 Ga0105239_101388922 485
129 3300014968 Ga0157379_10015095 Ga0157379_100150956 485
130 3300025907 Ga0207645_10015929 Ga0207645_100159292 485
131 3300025918 Ga0207662_10001281 Ga0207662_100012819 485
132 3300025918 Ga0207662_10013078 Ga0207662_100130782 485
133 3300025935 Ga0207709_10056091 Ga0207709_100560912 485
134 3300025940 Ga0207691_10016438 Ga0207691_100164384 485
135 3300025941 Ga0207711_10054812 Ga0207711_100548123 485
136 3300025981 Ga0207640_10015278 Ga0207640_100152783 485
137 3300026041 Ga0207639_10124319 Ga0207639_101243192 485
138 3300026089 Ga0207648_10002257 Ga0207648_1000225711 485
139 3300026142 Ga0207698_10020410 Ga0207698_100204104 485
140 3300028380 Ga0268265_10055188 Ga0268265_100551882 485
141 3300032002 Ga0307416_100146011 Ga0307416_1001460111 485
142 3300032005 Ga0307411_10033650 Ga0307411_100336503 485
143 3300042156 Ga0439446_0007839 Ga0439446_0007839_760_2223 485
144 3300042876 Ga0451577_0190719 Ga0451577_0190719_18_1484 485
145 3300050515 nmdc:mga0a205_16786_c1 nmdc:mga0a205_16786_c1_4053_5522 485
146 3300061734 Ga0530510_0106697 Ga0530510_0106697_536_2008 485

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00749

tRNA-synt_1c

tRNA synthetases class I (E and Q), catalytic domain

105

275

0.98

PF00749

tRNA-synt_1c

tRNA synthetases class I (E and Q), catalytic domain

3

109

0.98

PF19269

Anticodon_2

Anticodon binding domain

288

436

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
1g59-assembly1.cif.gz_A glutamyl-trna synthetase complexed with trna(glu). 0.9136 3 479
2cv1-assembly1.cif.gz_A glutamyl-trna synthetase from thermus thermophilus in complex with trna(glu), atp, and an analog of l-glutamate: a quaternary complex 0.9123 3 479
1g59-assembly1.cif.gz_A glutamyl-trna synthetase complexed with trna(glu). 0.9081 3 479
2cv1-assembly1.cif.gz_A glutamyl-trna synthetase from thermus thermophilus in complex with trna(glu), atp, and an analog of l-glutamate: a quaternary complex 0.9068 3 479
3pnv-assembly1.cif.gz_A v369m mutant of glutamyl-trna synthetase from mycobacterium tuberculosis 0.9065 1 480
ID Description Score Start End Superfamily
af_Q9FEA2_46_378_3.40.50.620 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9699 3 324 3.40.50.620
3akzC01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9674 2 241 3.40.50.620
af_Q869Z3_49_403_3.40.50.620 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9564 3 324 3.40.50.620
af_Q2G241_1_332_3.40.50.620 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9553 3 327 3.40.50.620
af_Q8IDD3_74_404_3.40.50.620 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9478 3 324 3.40.50.620
ID Description Score Start End GO Terms
AF-A0A7V9CND5-F1-model_v4 Aminoacyl-tRNA synthetase class I anticodon-binding domain-containing protein 0.973 299 479 GO:0000049
GO:0004818
GO:0005524
GO:0005829
GO:0006424
AF-A0A5J5WR89-F1-model_v4 glutamate--tRNA ligase (EC 6.1.1.17) (Glutamyl-tRNA synthetase) 0.9694 1 316 GO:0004818
GO:0005524
GO:0005739
GO:0006424
GO:0008270
GO:0009791
GO:0048608
AF-A0A3M1D3Q1-F1-model_v4 Aminoacyl-tRNA synthetase class I anticodon-binding domain-containing protein 0.9692 388 479 GO:0000049
GO:0004812
GO:0005524
GO:0006412
AF-A0A433CXP5-F1-model_v4 glutamate--tRNA ligase (EC 6.1.1.17) (Glutamyl-tRNA synthetase) 0.9676 3 303 GO:0004818
GO:0005524
GO:0005739
GO:0006424
GO:0008270
AF-E1ZGZ9-F1-model_v4 glutamate--tRNA ligase (EC 6.1.1.17) (Glutamyl-tRNA synthetase) 0.9675 3 342 GO:0004818
GO:0005524
GO:0005739
GO:0006424
GO:0008270
GO:0009791
GO:0048608

Feature Viewer

pLDDT pTM Quality
91.91 0.89 High
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Predicted Structure (AlphaFold2)

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