F198359

General Info

Members Datasets Scaffolds Average Seq Length
146 108 122 246

Family's Representative Sequence

Representative Sequence 3300044842|Ga0466957_0014326|Ga0466957_0014326_1296_2180
Length 294
Sequence MIIKHMRKLLTDNFPLVTICKPDYNIYQSGYKMPGKMHEFCGYKIIINMYNQIESKVVIVTGASSGIGKAIALKLSKFGARLILSGRRMEQLEKVEDEIKSAGGEAICVTTDVRHKVDMENLVNAAVKKYGRLDVIINNAGVAQVSRIDELDTDGWEEMIDINLKGVLYGMAAAIPVFRQQRSGHIVNIISTAGIKIVPTQGVYAGTKNAVRTITEAFRQESDGAIRITGISPGMVKTDFARNMKNEATRSTILENMEQLAIAPEAVADAVLYAISQPADVEVGEIVIRPARQN

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2523231067 Pleomorphomonas oryzae DSM 16300 Isolate Unclassified
3 2585428061 Chryseobacterium sp. CF356 Isolate Rhizosphere
4 2585428095 Chryseobacterium sp. YR005 Isolate Rhizosphere
5 2585428115 Chryseobacterium sp. YR561 Isolate Rhizosphere
6 2585428187 Chryseobacterium sp. YR460 Isolate Rhizosphere
7 2643221667 Flavobacterium sp. Root420 Isolate Unclassified
8 2738541279 Flavobacterium sp. GV069 Isolate Unclassified
9 2738541285 Flavobacterium sp. GV030 Isolate Unclassified
10 2738543007 Flavobacterium sp. GV063 Isolate Unclassified
11 2738543031 Pleomorphomonas sp. CF100 Isolate Unclassified
12 2775506739 Chryseobacterium sp. 1335 Isolate Unclassified
13 2818991444 Filimonas endophytica 3197 Isolate Unclassified
14 2842722452 Pedobacter sp. R-72249 Isolate Unclassified
15 2842909656 Pedobacter sp. R-72393 Isolate Unclassified
16 2857618242 Flavobacterium sp. R-74482 Isolate Unclassified
17 2857627736 Pedobacter sp. R-74587 Isolate Unclassified
18 2914759650 Rhizosphaericola mali Isolate Rhizosphere
19 2929154850 Filimonas sp. R-72421 Hybrid assembly Isolate Unclassified
20 2945924605 Chryseobacterium ginsenosidimutans W1I9 Isolate Rhizosphere
21 2945997725 Pedobacter sp. W3I1 Isolate Rhizosphere
22 2946019816 Chryseobacterium sp. W4I1 Isolate Rhizosphere
23 2993372514 Chryseobacterium sp. SLBN-27 Isolate Rhizosphere
24 2993480792 Chryseobacterium nepalense SLBN-92 Isolate Rhizosphere
25 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
26 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
27 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
28 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
29 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
30 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
31 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
32 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
33 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
34 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
35 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
36 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
37 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
38 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
39 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
40 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
41 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
42 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
43 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
44 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
45 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
46 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
47 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
48 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
49 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
50 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
51 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
52 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
53 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
54 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
55 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
57 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
64 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
65 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
66 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
67 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
68 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
69 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
70 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
71 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
72 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
73 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
74 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
75 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
76 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
77 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
78 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
79 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
80 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
81 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
82 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
83 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
84 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
85 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
86 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
87 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
88 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
89 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
90 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
91 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
92 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
93 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
94 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
95 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
96 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
97 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
98 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
99 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
100 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
101 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
102 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
103 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
104 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
105 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
106 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
107 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
108 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 83.56
Metatranscriptomes 0
Isolates 16.44

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 21.92
Nodule 0
Rhizoplane 0
Rhizosphere 62.33
Stem 0
Stem Tuber 0
Unclassified 15.75

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_2011997 2162886007 Bacteria 1585
2 SwRhRL2b_contig_2871430 2162886007 Bacteria 4666
3 rootL2_10075395 3300003322 Bacteria 8008
4 rootH1_10339881 3300003323 Bacteria 1445
5 Ga0055535_1000572 3300003761 Bacteria 31004
6 Ga0055526_1007610 3300003771 Bacteria 5590
7 Ga0055526_1008563 3300003771 Bacteria 5075
8 Ga0055526_1043311 3300003771 Unclassified 1098
9 Ga0055528_1001292 3300003790 Bacteria 15732
10 Ga0055531_10012740 3300003794 Unclassified 3929
11 Ga0055531_10015984 3300003794 Bacteria 3268
12 Ga0065165_1000493 3300005262 Bacteria 60949
13 Ga0065714_10004681 3300005288 Bacteria 6052
14 Ga0065714_10064709 3300005288 Bacteria 22067
15 Ga0065704_10000289 3300005289 Bacteria 49641
16 Ga0065704_10077350 3300005289 Bacteria 4766
17 Ga0070683_100000821 3300005329 Bacteria 23016
18 Ga0070709_10000117 3300005434 Bacteria 54159
19 Ga0070714_100009542 3300005435 Bacteria 7636
20 Ga0070714_100163499 3300005435 Bacteria 2015
21 Ga0070713_100007243 3300005436 Bacteria 7769
22 Ga0070684_100010836 3300005535 Bacteria 7241
23 Ga0068852_100523597 3300005616 Bacteria 1183
24 Ga0105239_10000786 3300010375 Bacteria 45039
25 Ga0157373_10001334 3300013100 Bacteria 18896
26 Ga0157373_10001570 3300013100 Bacteria 17432
27 Ga0157373_10009344 3300013100 Bacteria 7245
28 Ga0157373_10094115 3300013100 Bacteria 2110
29 Ga0157371_10000050 3300013102 Bacteria 183160
30 Ga0157371_10001364 3300013102 Bacteria 25627
31 Ga0157370_10004078 3300013104 Bacteria 16933
32 Ga0157370_10014969 3300013104 Bacteria 7909
33 Ga0157370_10043917 3300013104 Bacteria 4299
34 Ga0157370_10045441 3300013104 Bacteria 4213
35 Ga0157370_10562680 3300013104 Bacteria 1045
36 Ga0157369_10000004 3300013105 Bacteria 479764
37 Ga0157375_10000913 3300013308 Bacteria 25691
38 Ga0182006_1000345 3300015261 Bacteria 39520
39 Ga0182007_10000006 3300015262 Bacteria 427355
40 Ga0163161_10000012 3300017792 Bacteria 264639
41 Ga0163161_10000232 3300017792 Bacteria 51372
42 Ga0163161_10061932 3300017792 Unclassified 2725
43 Ga0163161_10265442 3300017792 Bacteria 1342
44 Ga0209258_100378 3300025242 Bacteria 57308
45 Ga0209646_1007608 3300025246 Unclassified 1762
46 Ga0209148_1000481 3300025254 Bacteria 41878
47 Ga0209673_1000517 3300025273 Bacteria 63164
48 Ga0209564_1001818 3300025295 Bacteria 19603
49 Ga0209564_1037154 3300025295 Unclassified 1378
50 Ga0209758_1004545 3300025297 Bacteria 11461
51 Ga0209050_1001531 3300025298 Bacteria 24311
52 Ga0209050_1036504 3300025298 Bacteria 1433
53 Ga0207426_1005445 3300025302 Bacteria 5807
54 Ga0209257_1000179 3300025304 Bacteria 158484
55 Ga0209257_1002201 3300025304 Bacteria 20163
56 Ga0207699_10000035 3300025906 Bacteria 129523
57 Ga0207700_10005289 3300025928 Bacteria 7696
58 Ga0207664_10049981 3300025929 Bacteria 3295
59 Ga0207661_10001498 3300025944 Bacteria 15820
60 Ga0207698_10447683 3300026142 Bacteria 1246
61 Ga0307515_10000003 3300028794 Bacteria 891317
62 Ga0307515_10105146 3300028794 Unclassified 3364
63 Ga0307513_10318873 3300031456 Bacteria 1313
64 Ga0307405_10000020 3300031731 Bacteria 156779
65 Ga0307413_10000064 3300031824 Bacteria 26787
66 Ga0307407_10000036 3300031903 Bacteria 76457
67 Ga0307412_10000023 3300031911 Bacteria 237005
68 Ga0307412_10019340 3300031911 Bacteria 4122
69 Ga0307409_100270979 3300031995 Bacteria 1563
70 Ga0307416_100000007 3300032002 Bacteria 433284
71 Ga0307414_10000322 3300032004 Bacteria 27336
72 Ga0307414_10006727 3300032004 Bacteria 6431
73 Ga0307414_10016115 3300032004 Bacteria 4534
74 Ga0307414_10032946 3300032004 Bacteria 3418
75 Ga0307414_10033354 3300032004 Bacteria 3402
76 Ga0307414_10395647 3300032004 Bacteria 1198
77 Ga0307411_10000001 3300032005 Bacteria 931810
78 Ga0439447_022931 3300041407 Bacteria 1630
79 Ga0439445_0000070 3300042004 Bacteria 15513
80 Ga0466972_0092253 3300044658 Bacteria 1436
81 Ga0466957_0014326 3300044842 Bacteria 4616
82 Ga0495627_004759 3300046453 Bacteria 5612
83 Ga0495627_042664 3300046453 Bacteria 1389
84 Ga0495638_0134314 3300046460 Bacteria 1451
85 Ga0495607_0043383 3300046501 Bacteria 2660
86 Ga0495606_0010399 3300046507 Bacteria 7727
87 Ga0495606_0027309 3300046507 Bacteria 4051
88 Ga0495610_0000495 3300046512 Bacteria 40233
89 Ga0495616_0013697 3300046513 Bacteria 4567
90 Ga0495632_0003376 3300046519 Bacteria 11375
91 Ga0495643_0068903 3300046522 Bacteria 1861
92 Ga0495663_0007249 3300046525 Bacteria 3060
93 Ga0495633_0000137 3300046558 Bacteria 96876
94 Ga0495633_0000951 3300046558 Bacteria 24071
95 Ga0495625_0001175 3300046660 Bacteria 33641
96 Ga0495625_0002868 3300046660 Bacteria 18060
97 Ga0495625_0006572 3300046660 Bacteria 10318
98 Ga0495660_0020578 3300046810 Bacteria 3782
99 Ga0495686_0000537 3300047472 Bacteria 54196
100 Ga0496121_0010616 3300048924 Bacteria 10347
101 Ga0496122_0006909 3300048925 Bacteria 12824
102 Ga0496123_0001438 3300048926 Bacteria 33175
103 Ga0496126_0003904 3300048929 Bacteria 18331
104 Ga0501031_0139797 3300049568 Bacteria 1582
105 Ga0501036_0010538 3300049572 Bacteria 7637
106 Ga0501043_0028327 3300049579 Bacteria 4397
107 Ga0501249_003099 3300049679 Bacteria 3346
108 Ga0501266_000019 3300049763 Bacteria 114355
109 Ga0501269_000098 3300049766 Bacteria 27230
110 Ga0500578_0032966 3300053086 Bacteria 3330
111 Ga0500644_0043109 3300053088 Bacteria 1508
112 Ga0500646_0058654 3300053090 Unclassified 1127
113 Ga0500651_0000084 3300053093 Bacteria 60127
114 Ga0500651_0005417 3300053093 Bacteria 7288
115 Ga0500658_0000003 3300053134 Bacteria 512506
116 Ga0500559_0158259 3300053136 Bacteria 1064
117 Ga0500577_0039443 3300053142 Bacteria 1712
118 Ga0500622_0000009 3300053156 Bacteria 419980
119 Ga0500622_0000016 3300053156 Bacteria 337983
120 Ga0500622_0003033 3300053156 Bacteria 11597
121 Ga0500622_0017964 3300053156 Bacteria 3762
122 Ga0500661_005166 3300055283 Bacteria 2444

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046660 Ga0495625_0001175 Ga0495625_0001175_24820_25590 212
2 3300025929 Ga0207664_10049981 Ga0207664_100499812 230
3 3300005435 Ga0070714_100163499 Ga0070714_1001634992 231
4 3300041407 Ga0439447_022931 Ga0439447_022931_682_1431 231
5 3300053134 Ga0500658_0000003 Ga0500658_0000003_233957_234838 231
6 3300005434 Ga0070709_10000117 Ga0070709_1000011746 232
7 3300005436 Ga0070713_100007243 Ga0070713_1000072435 232
8 3300025906 Ga0207699_10000035 Ga0207699_1000003584 232
9 3300025928 Ga0207700_10005289 Ga0207700_100052894 232
10 3300005435 Ga0070714_100009542 Ga0070714_1000095426 234
11 iso_pu_bacteria 2643221667 2644372652 237
12 iso_pu_bacteria 2738541279 2738732313 237
13 iso_pu_bacteria 2738541285 2738764878 237
14 iso_pu_bacteria 2738543007 2739213893 237
15 3300046453 Ga0495627_004759 Ga0495627_004759_2118_2855 238
16 3300010375 Ga0105239_10000786 Ga0105239_1000078613 239
17 iso_pu_bacteria 2523231067 2523470408 239
18 iso_pu_bacteria 2738543031 2739351841 239
19 3300017792 Ga0163161_10000012 Ga0163161_10000012196 241
20 3300046460 Ga0495638_0134314 Ga0495638_0134314_409_1146 241
21 3300046525 Ga0495663_0007249 Ga0495663_0007249_1910_2647 241
22 3300053088 Ga0500644_0043109 Ga0500644_0043109_111_848 241
23 3300053090 Ga0500646_0058654 Ga0500646_0058654_330_1067 241
24 iso_pu_bacteria 2585428061 2587750524 241
25 iso_pu_bacteria 2585428095 2587866836 241
26 iso_pu_bacteria 2585428115 2587943464 241
27 iso_pu_bacteria 2585428187 2588234088 241
28 iso_pu_bacteria 2818991444 2819587424 241
29 iso_pu_bacteria 2842722452 2842725909 241
30 iso_pu_bacteria 2842909656 2842912913 241
31 iso_pu_bacteria 2857627736 2857628166 241
32 iso_pu_bacteria 2914759650 2914761031 241
33 iso_pu_bacteria 2914759650 2914761705 241
34 iso_pu_bacteria 2945997725 2945998158 241
35 iso_pu_bacteria 2946019816 2946021097 241
36 iso_pu_bacteria 2993372514 2993373711 241
37 iso_pu_bacteria 2993480792 2993483679 241
38 iso_pu_bacteria 2929154850 2929156504 242
39 3300017792 Ga0163161_10061932 Ga0163161_100619322 243
40 3300003794 Ga0055531_10015984 Ga0055531_100159842 244
41 3300013104 Ga0157370_10043917 Ga0157370_100439173 244
42 3300025298 Ga0209050_1036504 Ga0209050_10365042 244
43 3300025304 Ga0209257_1000179 Ga0209257_1000179120 244
44 3300028794 Ga0307515_10105146 Ga0307515_101051462 244
45 3300032004 Ga0307414_10032946 Ga0307414_100329461 244
46 3300048924 Ga0496121_0010616 Ga0496121_0010616_348_1082 244
47 3300048925 Ga0496122_0006909 Ga0496122_0006909_6792_7526 244
48 3300048926 Ga0496123_0001438 Ga0496123_0001438_16942_17676 244
49 3300048929 Ga0496126_0003904 Ga0496126_0003904_408_1142 244
50 2162886007 SwRhRL2b_contig_2011997 SwRhRL2b_0960.00005050 245
51 2162886007 SwRhRL2b_contig_2871430 SwRhRL2b_0276.00007130 245
52 3300003322 rootL2_10075395 rootL2_100753952 245
53 3300003323 rootH1_10339881 rootH1_103398811 245
54 3300003761 Ga0055535_1000572 Ga0055535_10005724 245
55 3300003771 Ga0055526_1007610 Ga0055526_10076106 245
56 3300003771 Ga0055526_1008563 Ga0055526_10085634 245
57 3300003771 Ga0055526_1043311 Ga0055526_10433111 245
58 3300003790 Ga0055528_1001292 Ga0055528_100129211 245
59 3300003794 Ga0055531_10012740 Ga0055531_100127403 245
60 3300005262 Ga0065165_1000493 Ga0065165_100049345 245
61 3300005288 Ga0065714_10004681 Ga0065714_100046813 245
62 3300005288 Ga0065714_10064709 Ga0065714_1006470913 245
63 3300005289 Ga0065704_10000289 Ga0065704_1000028930 245
64 3300005289 Ga0065704_10077350 Ga0065704_100773505 245
65 3300005329 Ga0070683_100000821 Ga0070683_10000082115 245
66 3300005535 Ga0070684_100010836 Ga0070684_1000108366 245
67 3300005616 Ga0068852_100523597 Ga0068852_1005235972 245
68 3300013100 Ga0157373_10001334 Ga0157373_1000133416 245
69 3300013100 Ga0157373_10001570 Ga0157373_100015708 245
70 3300013100 Ga0157373_10009344 Ga0157373_100093444 245
71 3300013100 Ga0157373_10094115 Ga0157373_100941152 245
72 3300013102 Ga0157371_10000050 Ga0157371_1000005091 245
73 3300013102 Ga0157371_10001364 Ga0157371_1000136411 245
74 3300013104 Ga0157370_10004078 Ga0157370_100040782 245
75 3300013104 Ga0157370_10014969 Ga0157370_1001496910 245
76 3300013104 Ga0157370_10045441 Ga0157370_100454412 245
77 3300013104 Ga0157370_10562680 Ga0157370_105626802 245
78 3300013105 Ga0157369_10000004 Ga0157369_10000004316 245
79 3300013308 Ga0157375_10000913 Ga0157375_1000091311 245
80 3300015261 Ga0182006_1000345 Ga0182006_10003456 245
81 3300015262 Ga0182007_10000006 Ga0182007_10000006107 245
82 3300017792 Ga0163161_10000232 Ga0163161_1000023239 245
83 3300017792 Ga0163161_10265442 Ga0163161_102654421 245
84 3300025242 Ga0209258_100378 Ga0209258_10037818 245
85 3300025246 Ga0209646_1007608 Ga0209646_10076083 245
86 3300025254 Ga0209148_1000481 Ga0209148_100048118 245
87 3300025273 Ga0209673_1000517 Ga0209673_10005179 245
88 3300025295 Ga0209564_1001818 Ga0209564_100181816 245
89 3300025295 Ga0209564_1037154 Ga0209564_10371542 245
90 3300025297 Ga0209758_1004545 Ga0209758_10045452 245
91 3300025298 Ga0209050_1001531 Ga0209050_10015314 245
92 3300025302 Ga0207426_1005445 Ga0207426_10054454 245
93 3300025304 Ga0209257_1002201 Ga0209257_100220115 245
94 3300025944 Ga0207661_10001498 Ga0207661_100014985 245
95 3300026142 Ga0207698_10447683 Ga0207698_104476832 245
96 3300028794 Ga0307515_10000003 Ga0307515_100000039 245
97 3300031456 Ga0307513_10318873 Ga0307513_103188732 245
98 3300031731 Ga0307405_10000020 Ga0307405_10000020149 245
99 3300031824 Ga0307413_10000064 Ga0307413_1000006431 245
100 3300031903 Ga0307407_10000036 Ga0307407_1000003639 245
101 3300031911 Ga0307412_10000023 Ga0307412_1000002326 245
102 3300031911 Ga0307412_10019340 Ga0307412_100193402 245
103 3300031995 Ga0307409_100270979 Ga0307409_1002709792 245
104 3300032002 Ga0307416_100000007 Ga0307416_100000007217 245
105 3300032004 Ga0307414_10000322 Ga0307414_100003227 245
106 3300032004 Ga0307414_10006727 Ga0307414_100067272 245
107 3300032004 Ga0307414_10016115 Ga0307414_100161152 245
108 3300032004 Ga0307414_10033354 Ga0307414_100333542 245
109 3300032004 Ga0307414_10395647 Ga0307414_103956472 245
110 3300032005 Ga0307411_10000001 Ga0307411_10000001382 245
111 3300042004 Ga0439445_0000070 Ga0439445_0000070_13408_14145 245
112 3300044658 Ga0466972_0092253 Ga0466972_0092253_74_814 245
113 3300044842 Ga0466957_0014326 Ga0466957_0014326_1296_2180 245
114 3300046453 Ga0495627_042664 Ga0495627_042664_419_1159 245
115 3300046501 Ga0495607_0043383 Ga0495607_0043383_1330_2067 245
116 3300046507 Ga0495606_0010399 Ga0495606_0010399_4628_5365 245
117 3300046507 Ga0495606_0027309 Ga0495606_0027309_2392_3129 245
118 3300046512 Ga0495610_0000495 Ga0495610_0000495_25764_26501 245
119 3300046513 Ga0495616_0013697 Ga0495616_0013697_2110_2847 245
120 3300046519 Ga0495632_0003376 Ga0495632_0003376_10336_11073 245
121 3300046522 Ga0495643_0068903 Ga0495643_0068903_901_1638 245
122 3300046558 Ga0495633_0000137 Ga0495633_0000137_37064_37804 245
123 3300046558 Ga0495633_0000951 Ga0495633_0000951_22556_23293 245
124 3300046660 Ga0495625_0002868 Ga0495625_0002868_5096_5836 245
125 3300046660 Ga0495625_0006572 Ga0495625_0006572_1162_1899 245
126 3300046810 Ga0495660_0020578 Ga0495660_0020578_986_1723 245
127 3300047472 Ga0495686_0000537 Ga0495686_0000537_2484_3221 245
128 3300049568 Ga0501031_0139797 Ga0501031_0139797_768_1571 245
129 3300049572 Ga0501036_0010538 Ga0501036_0010538_996_1799 245
130 3300049579 Ga0501043_0028327 Ga0501043_0028327_3250_4053 245
131 3300049679 Ga0501249_003099 Ga0501249_003099_1299_2048 245
132 3300049763 Ga0501266_000019 Ga0501266_000019_3562_4311 245
133 3300049766 Ga0501269_000098 Ga0501269_000098_9375_10124 245
134 3300053086 Ga0500578_0032966 Ga0500578_0032966_60_836 245
135 3300053093 Ga0500651_0000084 Ga0500651_0000084_19504_20241 245
136 3300053093 Ga0500651_0005417 Ga0500651_0005417_1948_2688 245
137 3300053136 Ga0500559_0158259 Ga0500559_0158259_227_976 245
138 3300053142 Ga0500577_0039443 Ga0500577_0039443_693_1430 245
139 3300053156 Ga0500622_0000009 Ga0500622_0000009_52852_53592 245
140 3300053156 Ga0500622_0000016 Ga0500622_0000016_56942_57682 245
141 3300053156 Ga0500622_0003033 Ga0500622_0003033_1031_1774 245
142 3300053156 Ga0500622_0017964 Ga0500622_0017964_2894_3634 245
143 3300055283 Ga0500661_005166 Ga0500661_005166_729_1466 245
144 iso_pu_bacteria 2775506739 2775673587 245
145 iso_pu_bacteria 2857618242 2857618723 245
146 iso_pu_bacteria 2945924605 2945926527 245

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00106

adh_short

short chain dehydrogenase

56

249

0.98

PF13561

adh_short_C2

Enoyl-(Acyl carrier protein) reductase

62

289

0.91

PF08659

KR

KR domain

56

232

0.88

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

58

288

0.78

Structural Annotation

Top 5 Hits

ID Description Score Start End
3tfo-assembly1.cif.gz_B crystal structure of a putative 3-oxoacyl-(acyl-carrier-protein) reductase from sinorhizobium meliloti 0.9693 6 243
3tfo-assembly1.cif.gz_B crystal structure of a putative 3-oxoacyl-(acyl-carrier-protein) reductase from sinorhizobium meliloti 0.9604 6 243
3tfo-assembly1.cif.gz_D crystal structure of a putative 3-oxoacyl-(acyl-carrier-protein) reductase from sinorhizobium meliloti 0.958 7 242
3tfo-assembly1.cif.gz_C crystal structure of a putative 3-oxoacyl-(acyl-carrier-protein) reductase from sinorhizobium meliloti 0.9572 6 242
2jap-assembly1.cif.gz_C clavulanic acid dehydrogenase: structural and biochemical analysis of the final step in the biosynthesis of the beta-lactamase inhibitor clavulanic acid 0.9425 3 245
ID Description Score Start End Superfamily
3tfoB00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9693 6 243 3.40.50.720
af_A0A0P0X9U1_21_128_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9638 3 93 3.40.50.720
3tfoB00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9604 6 243 3.40.50.720
af_Q6PKH6_18_219_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9439 4 185 3.40.50.720
af_C6T421_12_106_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9373 2 89 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A838DWV4-F1-model_v4 SDR family NAD(P)-dependent oxidoreductase 0.9926 1 69
AF-A0A2V9WL20-F1-model_v4 SDR family NAD(P)-dependent oxidoreductase 0.9742 4 92 GO:0016020
GO:0016491
AF-A0A2N0QKI9-F1-model_v4 NAD(P)-binding protein 0.972 5 128 GO:0005829
GO:0009688
GO:0010301
AF-A0A5N9HC11-F1-model_v4 SDR family NAD(P)-dependent oxidoreductase 0.9716 5 113 GO:0016491
AF-X1HCU3-F1-model_v4 Uncharacterized protein 0.9713 1 91

Feature Viewer

pLDDT pTM Quality
91.68 0.91 High
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Predicted Structure (AlphaFold2)

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