F198346

General Info

Members Datasets Scaffolds Average Seq Length
146 81 292 368

Family's Representative Sequence

Representative Sequence 3300044712|Ga0453684_0034515|Ga0453684_0034515_3135_4448
Length 437
Sequence MSAKAFGPPVILDTGTHPANFSQQLIRMSISTPLDLPDSSVSAADPVDNSTSRNRVETLPARLPTPLAPRSAWVEIDLRRLRRNFALIQKDKPPGLQILSVVKDEGYGHGALAVARAALDTGAGFLALSTVEEAVRLRDQGIRAQLLLLGDRQESELPWCIDHDLTCSVGEPQNVRKLAQLAERAGKRVPVHLKINTGMNRYGVRWTEAAALAQAIHASPHLVLEGVLSHFSQSDETDKTFALLQLGRFEEALRAIAAQGNPVPLRHLCNSGGFLDLPRAHFDMVRLGILPLGVFPSSVCRRIPGIEPVMSVKARIAAIQKLDVGDCVGYGMRFTAASPRRIAVLPLGYGDGFPRVRNAGCALIHGMRAPLVGGVAMDALTVDITDIPAAQLWDEAVLMGRQGNDEISVHEVAKLKGSVSYDVLTSWRARLPRIYVE

Samples

Sample ID Description Type Environment
1 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
5 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
6 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
7 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
8 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
9 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
10 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
11 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
12 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
13 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
14 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
15 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
16 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
17 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
18 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
19 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
20 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
21 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
22 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
23 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
24 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
25 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
26 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
27 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
28 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
29 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
30 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
31 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
32 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
44 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
45 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
46 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
47 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
48 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
49 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
50 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
51 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
52 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
53 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
54 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
55 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
56 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
57 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
58 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
59 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
60 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
61 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
62 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
63 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
64 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
65 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
66 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
67 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
68 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
69 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
70 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
71 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
72 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
73 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
74 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
75 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
76 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
77 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
78 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
79 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
80 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
81 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 98.63
Stem 0
Stem Tuber 0
Unclassified 8.22

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0453684_0034515 3300044712 Bacteria 7019
2 rootH2_10013476 3300003320 Bacteria 11103
3 rootH1_10124687 3300003323 Bacteria 6078
4 Ga0070690_100203929 3300005330 Unclassified 1377
5 Ga0070703_10000711 3300005406 Bacteria 11217
6 Ga0070709_10028628 3300005434 Bacteria 3324
7 Ga0070714_100051285 3300005435 Bacteria 3517
8 Ga0070714_100133867 3300005435 Bacteria 2217
9 Ga0070713_100015991 3300005436 Bacteria 5631
10 Ga0070713_100089749 3300005436 Bacteria 2641
11 Ga0070705_100005038 3300005440 Bacteria 6429
12 Ga0070705_100022417 3300005440 Bacteria 3375
13 Ga0070708_100000027 3300005445 Bacteria 97468
14 Ga0070708_100000417 3300005445 Bacteria 31932
15 Ga0070708_100006523 3300005445 Bacteria 9282
16 Ga0070708_100057356 3300005445 Bacteria 3467
17 Ga0070706_100000016 3300005467 Bacteria 174698
18 Ga0070706_100000117 3300005467 Bacteria 97475
19 Ga0070706_100000547 3300005467 Bacteria 43712
20 Ga0070706_100002192 3300005467 Bacteria 19880
21 Ga0070706_100336063 3300005467 Bacteria 1408
22 Ga0070707_100000060 3300005468 Bacteria 97475
23 Ga0070707_100004812 3300005468 Bacteria 12649
24 Ga0070707_100011548 3300005468 Bacteria 8237
25 Ga0070707_100014426 3300005468 Bacteria 7406
26 Ga0070707_100017278 3300005468 Bacteria 6781
27 Ga0070707_100064896 3300005468 Bacteria 3507
28 Ga0070707_100211845 3300005468 Bacteria 1888
29 Ga0070698_100010707 3300005471 Bacteria 9766
30 Ga0070698_100093937 3300005471 Bacteria 2979
31 Ga0070698_100194833 3300005471 Bacteria 1963
32 Ga0070699_100000784 3300005518 Bacteria 29316
33 Ga0070699_100000808 3300005518 Bacteria 28948
34 Ga0070699_100003036 3300005518 Bacteria 14887
35 Ga0070699_100004088 3300005518 Bacteria 12899
36 Ga0070699_100060082 3300005518 Bacteria 3293
37 Ga0070697_100000351 3300005536 Bacteria 36223
38 Ga0070697_100008781 3300005536 Bacteria 7890
39 Ga0070697_100008844 3300005536 Bacteria 7860
40 Ga0070697_100009053 3300005536 Bacteria 7778
41 Ga0070697_100017675 3300005536 Bacteria 5617
42 Ga0070697_100161925 3300005536 Bacteria 1890
43 Ga0070695_100039082 3300005545 Bacteria 2997
44 Ga0068863_100138477 3300005841 Unclassified 2326
45 Ga0068858_100110320 3300005842 Bacteria 2569
46 Ga0070717_10000007 3300006028 Bacteria 304340
47 Ga0070717_10080208 3300006028 Bacteria 2738
48 Ga0070712_100151162 3300006175 Bacteria 1783
49 Ga0075433_10169978 3300006852 Bacteria 1940
50 Ga0075436_100000226 3300006914 Bacteria 35139
51 Ga0075435_100058783 3300007076 Bacteria 3115
52 Ga0075435_100062072 3300007076 Bacteria 3032
53 Ga0075435_100095915 3300007076 Bacteria 2453
54 Ga0075435_100158681 3300007076 Bacteria 1904
55 Ga0099794_10000117 3300007265 Bacteria 29179
56 Ga0105240_10009344 3300009093 Bacteria 13896
57 Ga0105240_10082574 3300009093 Bacteria 3946
58 Ga0105240_10207908 3300009093 Bacteria 2289
59 Ga0157370_10018787 3300013104 Bacteria 6950
60 Ga0157374_10012563 3300013296 Bacteria 7369
61 Ga0157378_10287722 3300013297 Bacteria 1586
62 Ga0157375_10000074 3300013308 Bacteria 103033
63 Ga0163163_10000312 3300014325 Bacteria 47714
64 Ga0157376_10032802 3300014969 Bacteria 4173
65 Ga0207653_10000689 3300025885 Bacteria 11599
66 Ga0207692_10100005 3300025898 Bacteria 1590
67 Ga0207699_10032953 3300025906 Bacteria 2924
68 Ga0207699_10033781 3300025906 Bacteria 2894
69 Ga0207684_10000002 3300025910 Bacteria 1042751
70 Ga0207684_10000026 3300025910 Bacteria 316711
71 Ga0207684_10000148 3300025910 Bacteria 124604
72 Ga0207684_10000222 3300025910 Bacteria 87705
73 Ga0207684_10013203 3300025910 Bacteria 7149
74 Ga0207684_10022279 3300025910 Bacteria 5408
75 Ga0207684_10138118 3300025910 Bacteria 2094
76 Ga0207695_10005918 3300025913 Bacteria 16028
77 Ga0207646_10000143 3300025922 Bacteria 97493
78 Ga0207646_10000668 3300025922 Bacteria 44376
79 Ga0207646_10001778 3300025922 Bacteria 26121
80 Ga0207646_10030249 3300025922 Bacteria 4911
81 Ga0207646_10035242 3300025922 Bacteria 4520
82 Ga0207646_10041482 3300025922 Bacteria 4137
83 Ga0207646_10042722 3300025922 Bacteria 4072
84 Ga0207646_10051011 3300025922 Bacteria 3702
85 Ga0207646_10078356 3300025922 Bacteria 2954
86 Ga0207646_10170832 3300025922 Bacteria 1963
87 Ga0207700_10013946 3300025928 Bacteria 5252
88 Ga0207664_10001453 3300025929 Bacteria 15562
89 Ga0207664_10006282 3300025929 Bacteria 8165
90 Ga0207664_10019480 3300025929 Bacteria 5015
91 Ga0207691_10262826 3300025940 Unclassified 1487
92 Ga0207648_10159863 3300026089 Bacteria 1990
93 Ga0209588_1000036 3300027671 Bacteria 65612
94 Ga0265338_10030356 3300028800 Bacteria 5327
95 Ga0265324_10007489 3300029957 Bacteria 4415
96 Ga0316576_10008303 3300031727 Bacteria 6612
97 Ga0316578_10028592 3300031728 Unclassified 3158
98 Ga0316577_10068548 3300031733 Bacteria 1981
99 Ga0316585_10044726 3300032137 Bacteria 1415
100 Ga0373926_0007982 3300035083 Bacteria 3527
101 Ga0373943_0151330 3300035170 Unclassified 1257
102 Ga0373946_0030594 3300035171 Bacteria 2150
103 Ga0316574_0020643 3300035398 Unclassified 3901
104 Ga0373935_0001600 3300035692 Bacteria 12618
105 Ga0373927_0015380 3300035695 Bacteria 5057
106 Ga0373947_0007774 3300035725 Bacteria 6195
107 Ga0373937_0138189 3300036401 Bacteria 2279
108 Ga0373937_0318712 3300036401 Unclassified 1471
109 Ga0316584_0012133 3300036712 Bacteria 6070
110 Ga0316584_0012807 3300036712 Bacteria 5921
111 Ga0316584_0220966 3300036712 Bacteria 1392
112 Ga0373925_0003544 3300037068 Bacteria 12040
113 Ga0395905_0008707 3300037471 Bacteria 9988
114 Ga0395905_0025600 3300037471 Bacteria 5564
115 Ga0453684_0026065 3300044712 Bacteria 8463
116 Ga0451576_0002134 3300045051 Bacteria 30694
117 Ga0451576_0012019 3300045051 Bacteria 9776
118 Ga0451576_0030738 3300045051 Bacteria 5735
119 Ga0451576_0036124 3300045051 Bacteria 5240
120 Ga0451576_0109383 3300045051 Unclassified 2876
121 Ga0495592_0000151 3300046454 Bacteria 60491
122 Ga0495651_0205062 3300046462 Bacteria 1377
123 Ga0495662_0021693 3300046476 Unclassified 3102
124 Ga0495664_0073972 3300046477 Bacteria 2038
125 Ga0495618_0005506 3300046514 Bacteria 7709
126 Ga0495628_0000092 3300046516 Bacteria 71184
127 Ga0495630_0019086 3300046517 Bacteria 5039
128 Ga0495630_0099559 3300046517 Unclassified 2199
129 Ga0495640_0024396 3300046533 Bacteria 4400
130 Ga0495586_0000559 3300046535 Bacteria 21546
131 Ga0495586_0099097 3300046535 Bacteria 1616
132 Ga0495645_0016420 3300046543 Bacteria 5285
133 Ga0495599_0002037 3300046678 Bacteria 11705
134 Ga0495658_0084415 3300046683 Bacteria 1870
135 Ga0495674_0004011 3300047319 Bacteria 14252
136 Ga0495676_0111800 3300047321 Unclassified 2003
137 Ga0495680_0120255 3300047322 Bacteria 1940
138 Ga0501034_0515434 3300049571 Unclassified 1108
139 Ga0501069_0034818 3300049585 Bacteria 2773
140 nmdc:mga0rr50_97524_c1 3300050513 Bacteria 2302
141 nmdc:mga08x19_143628_c1 3300050514 Bacteria 1613
142 nmdc:mga08x19_3285_c1 3300050514 Bacteria 9669
143 nmdc:mga08x19_68674_c1 3300050514 Bacteria 2307
144 nmdc:mga08x19_71850_c1 3300050514 Bacteria 2257
145 Ga0495595_0037756 3300053084 Bacteria 2198
146 Ga0495619_0045302 3300053085 Bacteria 2890
147 Ga0453684_0034515
148 rootH2_10013476
149 rootH1_10124687
150 Ga0070690_100203929
151 Ga0070703_10000711
152 Ga0070709_10028628
153 Ga0070714_100051285
154 Ga0070714_100133867
155 Ga0070713_100015991
156 Ga0070713_100089749
157 Ga0070705_100005038
158 Ga0070705_100022417
159 Ga0070708_100000027
160 Ga0070708_100000417
161 Ga0070708_100006523
162 Ga0070708_100057356
163 Ga0070706_100000016
164 Ga0070706_100000117
165 Ga0070706_100000547
166 Ga0070706_100002192
167 Ga0070706_100336063
168 Ga0070707_100000060
169 Ga0070707_100004812
170 Ga0070707_100011548
171 Ga0070707_100014426
172 Ga0070707_100017278
173 Ga0070707_100064896
174 Ga0070707_100211845
175 Ga0070698_100010707
176 Ga0070698_100093937
177 Ga0070698_100194833
178 Ga0070699_100000784
179 Ga0070699_100000808
180 Ga0070699_100003036
181 Ga0070699_100004088
182 Ga0070699_100060082
183 Ga0070697_100000351
184 Ga0070697_100008781
185 Ga0070697_100008844
186 Ga0070697_100009053
187 Ga0070697_100017675
188 Ga0070697_100161925
189 Ga0070695_100039082
190 Ga0068863_100138477
191 Ga0068858_100110320
192 Ga0070717_10000007
193 Ga0070717_10080208
194 Ga0070712_100151162
195 Ga0075433_10169978
196 Ga0075436_100000226
197 Ga0075435_100058783
198 Ga0075435_100062072
199 Ga0075435_100095915
200 Ga0075435_100158681
201 Ga0099794_10000117
202 Ga0105240_10009344
203 Ga0105240_10082574
204 Ga0105240_10207908
205 Ga0157370_10018787
206 Ga0157374_10012563
207 Ga0157378_10287722
208 Ga0157375_10000074
209 Ga0163163_10000312
210 Ga0157376_10032802
211 Ga0207653_10000689
212 Ga0207692_10100005
213 Ga0207699_10032953
214 Ga0207699_10033781
215 Ga0207684_10000002
216 Ga0207684_10000026
217 Ga0207684_10000148
218 Ga0207684_10000222
219 Ga0207684_10013203
220 Ga0207684_10022279
221 Ga0207684_10138118
222 Ga0207695_10005918
223 Ga0207646_10000143
224 Ga0207646_10000668
225 Ga0207646_10001778
226 Ga0207646_10030249
227 Ga0207646_10035242
228 Ga0207646_10041482
229 Ga0207646_10042722
230 Ga0207646_10051011
231 Ga0207646_10078356
232 Ga0207646_10170832
233 Ga0207700_10013946
234 Ga0207664_10001453
235 Ga0207664_10006282
236 Ga0207664_10019480
237 Ga0207691_10262826
238 Ga0207648_10159863
239 Ga0209588_1000036
240 Ga0265338_10030356
241 Ga0265324_10007489
242 Ga0316576_10008303
243 Ga0316578_10028592
244 Ga0316577_10068548
245 Ga0316585_10044726
246 Ga0373926_0007982
247 Ga0373943_0151330
248 Ga0373946_0030594
249 Ga0316574_0020643
250 Ga0373935_0001600
251 Ga0373927_0015380
252 Ga0373947_0007774
253 Ga0373937_0138189
254 Ga0373937_0318712
255 Ga0316584_0012133
256 Ga0316584_0012807
257 Ga0316584_0220966
258 Ga0373925_0003544
259 Ga0395905_0008707
260 Ga0395905_0025600
261 Ga0453684_0026065
262 Ga0451576_0002134
263 Ga0451576_0012019
264 Ga0451576_0030738
265 Ga0451576_0036124
266 Ga0451576_0109383
267 Ga0495592_0000151
268 Ga0495651_0205062
269 Ga0495662_0021693
270 Ga0495664_0073972
271 Ga0495618_0005506
272 Ga0495628_0000092
273 Ga0495630_0019086
274 Ga0495630_0099559
275 Ga0495640_0024396
276 Ga0495586_0000559
277 Ga0495586_0099097
278 Ga0495645_0016420
279 Ga0495599_0002037
280 Ga0495658_0084415
281 Ga0495674_0004011
282 Ga0495676_0111800
283 Ga0495680_0120255
284 Ga0501034_0515434
285 Ga0501069_0034818
286 nmdc:mga0rr50_97524_c1
287 nmdc:mga08x19_143628_c1
288 nmdc:mga08x19_3285_c1
289 nmdc:mga08x19_68674_c1
290 nmdc:mga08x19_71850_c1
291 Ga0495595_0037756
292 Ga0495619_0045302

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00842

Ala_racemase_C

Alanine racemase, C-terminal domain

309

435

0.97

PF01168

Ala_racemase_N

Alanine racemase, N-terminal domain

76

296

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
4y2w-assembly1.cif.gz_B crystal structure of a thermostable alanine racemase from thermoanaerobacter tengcongensis mb4 0.9613 4 374
5yyc-assembly1.cif.gz_C crystal structure of alanine racemase from bacillus pseudofirmus (of4) 0.9559 8 375
3e5p-assembly1.cif.gz_C crystal structure of alanine racemase from e.faecalis 0.9415 8 373
5yyc-assembly1.cif.gz_C crystal structure of alanine racemase from bacillus pseudofirmus (of4) 0.9382 8 375
4xbj-assembly2.cif.gz_D y274f alanine racemase from e. coli inhibited by l-ala-p 0.9359 10 375
ID Description Score Start End Superfamily
4y2wB01 Mainly Beta;Beta Barrel;Lyase, Ornithine Decarboxylase; Chain A, domain 1;Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.9722 248 374 2.40.37.10
4y2wB02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.9679 17 228 3.20.20.10
5yycC01 Mainly Beta;Beta Barrel;Lyase, Ornithine Decarboxylase; Chain A, domain 1;Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.9627 248 371 2.40.37.10
6q71A02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.958 17 228 3.20.20.10
1l6fA02 Mainly Beta;Beta Barrel;Lyase, Ornithine Decarboxylase; Chain A, domain 1;Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.9573 248 375 2.40.37.10
ID Description Score Start End GO Terms
AF-A0A645JF22-F1-model_v4 Alanine racemase (EC 5.1.1.1) 0.9858 249 376 GO:0005829
GO:0008784
GO:0030170
GO:0030632
AF-A0A3D0PB66-F1-model_v4 Alanine racemase 0.9824 266 372 GO:0005829
GO:0008784
GO:0030170
GO:0030632
AF-A0A350XV14-F1-model_v4 Alanine racemase 0.9817 263 366 GO:0005829
GO:0008784
GO:0030170
GO:0030632
AF-A0A3C0SL77-F1-model_v4 Alanine racemase 0.9789 210 374 GO:0005829
GO:0008784
GO:0030170
GO:0030632
AF-A0A7W1T2Z4-F1-model_v4 Alanine racemase 0.9785 266 372 GO:0005829
GO:0008784
GO:0030170
GO:0030632

Map