F197999

General Info

Members Datasets Scaffolds Average Seq Length
146 117 137 259

Family's Representative Sequence

Representative Sequence 3300031616|Ga0307508_10003757|Ga0307508_100037576
Length 281
Sequence MTLRQAQGDRKDFPAGSVWLVGAGPGDPELLTRKAARLIGVADVIFHDALVGPCVLDLANSAARLVHVGKRSGRHSKDQASIDRLIVEAALAGHRVVRLKGGDPSIFGRSMEELEACRAAGIAVQICPGITAASAAAASLGTSLTLRGLARKLVFVTAHARAGEVLDLDWQALADPAATLAIYMGKAAAVEVSRELMAAGLPASTPVALVENASLPDERSLITRLDLLALAARSALGSGPALLLIGAAVAPHAVESHVRSATSALHRTEPVHDRTDSEPDR

Samples

Sample ID Description Type Environment
1 2599185359 Sphingomonas sp. NFR04 Isolate Rhizoplane
2 2643221614 Phenylobacterium sp. Root77 Isolate Unclassified
3 2643221661 Phenylobacterium sp. Root1277 Isolate Unclassified
4 2643221666 Phenylobacterium sp. Root1290 Isolate Unclassified
5 2818991466 Sphingomonas trueperi 1152a Isolate Unclassified
6 2879163058 Sphingomonas pokkalii L3B27 Isolate Rhizosphere
7 2928100450 Novosphingobium sp. 1529 Isolate Rhizosphere
8 2928959182 Novosphingobium capsulatum 1057 Isolate Unclassified
9 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
10 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
11 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
12 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
13 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
14 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
15 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
16 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
17 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
18 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
19 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
20 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
21 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
22 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
23 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
24 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
25 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
26 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
27 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
28 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
29 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
30 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
31 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
32 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
33 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
34 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
35 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
36 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
37 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
38 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
39 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
40 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
41 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
42 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
43 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
44 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
59 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
60 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
61 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
62 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
63 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
64 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
65 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
66 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
67 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
68 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
69 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
70 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
71 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
72 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
73 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
74 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
75 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
76 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
77 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
78 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
79 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
80 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
81 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
82 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
83 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
84 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
85 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
86 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
87 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
88 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
89 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
90 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
91 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
92 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
93 3300049128 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G3_B_0_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
94 3300049130 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J3_B_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
95 3300049515 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F22_B_5_drought Metagenome Rhizosphere
96 3300049530 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_A_2_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
97 3300049531 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
98 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
99 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
100 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
101 3300049650 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G3_A_0_drought Metagenome Rhizosphere
102 3300049690 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G13_A_4_drought Metagenome Rhizosphere
103 3300049775 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F22_A_5_drought Metagenome Rhizosphere
104 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
105 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
106 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
107 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
108 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
109 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
110 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
111 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
112 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
113 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
114 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
115 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
116 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
117 8055225921 Achromobacter panacis KCTC 42751 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 91.1
Metatranscriptomes 2.74
Isolates 6.16

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 11.64
Nodule 0
Rhizoplane 3.42
Rhizosphere 67.81
Stem 0
Stem Tuber 0
Unclassified 17.12

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24751J29686_10000134 3300002459 Bacteria 37360
2 Ga0055540_1018985 3300003792 Bacteria 1866
3 Ga0070670_100055068 3300005331 Bacteria 3414
4 Ga0070689_100185345 3300005340 Bacteria 1692
5 Ga0070668_100006219 3300005347 Bacteria 8843
6 Ga0070668_100008591 3300005347 Bacteria 7585
7 Ga0070668_100011253 3300005347 Bacteria 6663
8 Ga0070669_100254999 3300005353 Bacteria 1398
9 Ga0070671_100080068 3300005355 Bacteria 2731
10 Ga0070685_10018360 3300005466 Bacteria 3760
11 Ga0070686_100017880 3300005544 Bacteria 4150
12 Ga0070665_100077587 3300005548 Bacteria 3328
13 Ga0068855_100100789 3300005563 Bacteria 3325
14 Ga0068859_100001942 3300005617 Bacteria 21088
15 Ga0068859_100020201 3300005617 Bacteria 6687
16 Ga0068859_100293163 3300005617 Bacteria 1720
17 Ga0068861_100000007 3300005719 Bacteria 86469
18 Ga0068863_100031996 3300005841 Bacteria 5017
19 Ga0068858_100038930 3300005842 Bacteria 4410
20 Ga0068858_100240835 3300005842 Bacteria 1716
21 Ga0068860_100000104 3300005843 Bacteria 138111
22 Ga0068860_100026529 3300005843 Bacteria 5583
23 Ga0068862_100004389 3300005844 Bacteria 11925
24 Ga0068862_100233036 3300005844 Bacteria 1671
25 Ga0068862_100622285 3300005844 Bacteria 1039
26 Ga0075363_100000707 3300006048 Bacteria 11299
27 Ga0075364_10006876 3300006051 Bacteria 6714
28 Ga0075362_10014113 3300006177 Bacteria 3218
29 Ga0075369_10004537 3300006186 Bacteria 5139
30 Ga0075370_10000026 3300006353 Bacteria 51806
31 Ga0068865_100110258 3300006881 Bacteria 2029
32 Ga0075436_100385997 3300006914 Bacteria 1013
33 Ga0097620_100001942 3300006931 Bacteria 21088
34 Ga0097620_100020200 3300006931 Bacteria 6687
35 Ga0097620_100293147 3300006931 Bacteria 1720
36 Ga0105240_10000466 3300009093 Bacteria 74664
37 Ga0105245_10000357 3300009098 Bacteria 42661
38 Ga0105243_10037680 3300009148 Bacteria 3760
39 Ga0105248_10000723 3300009177 Bacteria 37295
40 Ga0105239_10000385 3300010375 Bacteria 64470
41 Ga0157369_10675691 3300013105 Bacteria 1064
42 Ga0163162_10015303 3300013306 Bacteria 7494
43 Ga0163163_10402093 3300014325 Bacteria 1428
44 Ga0157379_10147629 3300014968 Bacteria 2121
45 Ga0209051_1001877 3300025303 Bacteria 16486
46 Ga0207695_10000485 3300025913 Bacteria 85032
47 Ga0207650_10040771 3300025925 Bacteria 3400
48 Ga0207687_10000323 3300025927 Bacteria 32543
49 Ga0207644_10072522 3300025931 Bacteria 2522
50 Ga0207709_10032825 3300025935 Bacteria 3043
51 Ga0207670_10155638 3300025936 Bacteria 1701
52 Ga0207704_10082111 3300025938 Bacteria 2087
53 Ga0207667_10105320 3300025949 Bacteria 2910
54 Ga0207667_10378120 3300025949 Bacteria 1443
55 Ga0207668_10002073 3300025972 Bacteria 11685
56 Ga0207668_10104648 3300025972 Bacteria 2110
57 Ga0207658_10394207 3300025986 Bacteria 1215
58 Ga0207658_10546486 3300025986 Bacteria 1036
59 Ga0207703_10122414 3300026035 Bacteria 2235
60 Ga0207675_100001249 3300026118 Bacteria 25345
61 Ga0268265_10003268 3300028380 Bacteria 11750
62 Ga0268265_10587482 3300028380 Bacteria 1062
63 Ga0268264_10000008 3300028381 Bacteria 773387
64 Ga0268264_10012766 3300028381 Bacteria 6913
65 Ga0307408_100037602 3300031548 Bacteria 3410
66 Ga0307508_10000960 3300031616 Bacteria 33550
67 Ga0307508_10003757 3300031616 Bacteria 15176
68 Ga0307406_10017296 3300031901 Bacteria 4199
69 Ga0307416_100014293 3300032002 Bacteria 5432
70 Ga0373931_0023509 3300035691 Bacteria 3112
71 Ga0395899_0000013 3300037312 Bacteria 510397
72 Ga0395905_0067553 3300037471 Bacteria 3348
73 Ga0436361_0451651 3300039447 Bacteria 8487
74 Ga0466969_0066892 3300044656 Bacteria 1734
75 Ga0466966_0008183 3300044684 Bacteria 6931
76 Ga0466961_0026801 3300044693 Bacteria 3706
77 Ga0466963_0007431 3300044694 Bacteria 6531
78 Ga0466964_0005238 3300044706 Bacteria 4808
79 Ga0466971_0000149 3300044719 Bacteria 26025
80 Ga0466957_0018556 3300044842 Bacteria 4086
81 Ga0466959_0024366 3300045049 Bacteria 4483
82 Ga0466959_0104430 3300045049 Bacteria 2027
83 Ga0451576_0002774 3300045051 Bacteria 25285
84 Ga0466958_0017639 3300045836 Bacteria 4131
85 Ga0466967_0225478 3300045976 Bacteria 1782
86 Ga0495610_0000020 3300046512 Bacteria 344007
87 Ga0495620_0021397 3300046515 Bacteria 3141
88 Ga0495620_0034324 3300046515 Bacteria 2293
89 Ga0495611_0057696 3300046648 Bacteria 1760
90 Ga0495686_0005311 3300047472 Bacteria 10208
91 Ga0496100_0352470 3300048903 Bacteria 1112
92 Ga0496112_0178631 3300048915 Bacteria 2086
93 Ga0496113_0012633 3300048916 Bacteria 5682
94 Ga0496113_0019075 3300048916 Bacteria 4791
95 Ga0496116_0000011 3300048919 Bacteria 646953
96 Ga0496116_0029647 3300048919 Bacteria 3940
97 Ga0496117_0023318 3300048920 Bacteria 4936
98 Ga0496117_0060323 3300048920 Bacteria 2615
99 Ga0496117_0080213 3300048920 Bacteria 2147
100 Ga0496118_0004960 3300048921 Bacteria 15403
101 Ga0496118_0015565 3300048921 Bacteria 7034
102 Ga0496121_0000022 3300048924 Bacteria 472849
103 Ga0496121_0000170 3300048924 Bacteria 144547
104 Ga0496121_0000222 3300048924 Bacteria 123595
105 Ga0496122_0001816 3300048925 Bacteria 32628
106 Ga0496123_0001206 3300048926 Bacteria 37815
107 Ga0496124_0003000 3300048927 Bacteria 21113
108 Ga0496125_0005339 3300048928 Bacteria 14355
109 Ga0496125_0085911 3300048928 Bacteria 2382
110 Ga0496125_0262113 3300048928 Bacteria 1082
111 Ga0496126_0000556 3300048929 Bacteria 71911
112 Ga0496126_0005957 3300048929 Bacteria 13720
113 Ga0501308_000557 3300049128 Bacteria 2498
114 Ga0501310_007214 3300049130 Bacteria 1184
115 Ga0501292_000049 3300049515 Bacteria 24987
116 Ga0501314_001956 3300049530 Bacteria 1551
117 Ga0501315_009354 3300049531 Bacteria 1157
118 Ga0501031_0255522 3300049568 Bacteria 1139
119 Ga0501043_0049986 3300049579 Bacteria 3287
120 Ga0501046_0658347 3300049580 Bacteria 740
121 Ga0501199_001847 3300049650 Bacteria 1942
122 Ga0501261_000013 3300049690 Bacteria 45622
123 Ga0501279_000017 3300049775 Bacteria 62448
124 Ga0501035_0001609 3300049822 Bacteria 22853
125 nmdc:mga03683_53_c1 3300050489 Bacteria 47904
126 nmdc:mga03n38_379_c1 3300050490 Bacteria 10921
127 nmdc:mga00v17_2171_c2 3300050491 Bacteria 7761
128 nmdc:mga0k408_101747_c1 3300050493 Bacteria 1694
129 nmdc:mga07m45_30_c1 3300050496 Bacteria 85279
130 nmdc:mga05p37_288408_c1 3300050507 Bacteria 1954
131 nmdc:mga08x19_362610_c1 3300050514 Bacteria 1013
132 nmdc:mga0sz30_36592_c1 3300050516 Bacteria 2052
133 nmdc:mga0sz30_4274_c1 3300050516 Bacteria 5151
134 Ga0500643_000482 3300053087 Bacteria 29044
135 Ga0500636_0043492 3300053177 Bacteria 2652
136 Ga0500637_0000681 3300053178 Bacteria 13513
137 Ga0466962_0000260 3300061719 Bacteria 22349

MSA Aligner

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049580 Ga0501046_0658347 Ga0501046_0658347_18_662 206
2 3300050493 nmdc:mga0k408_101747_c1 nmdc:mga0k408_101747_c1_984_1676 219
3 3300044706 Ga0466964_0005238 Ga0466964_0005238_4034_4726 230
4 3300025949 Ga0207667_10378120 Ga0207667_103781202 235
5 3300049128 Ga0501308_000557 Ga0501308_000557_838_1680 235
6 3300049130 Ga0501310_007214 Ga0501310_007214_201_1043 235
7 3300049530 Ga0501314_001956 Ga0501314_001956_100_942 235
8 3300049531 Ga0501315_009354 Ga0501315_009354_104_946 235
9 3300049650 Ga0501199_001847 Ga0501199_001847_1016_1858 235
10 3300048916 Ga0496113_0019075 Ga0496113_0019075_2724_3506 237
11 3300003792 Ga0055540_1018985 Ga0055540_10189853 242
12 iso_pu_bacteria 8055225921 8055226673 243
13 3300047472 Ga0495686_0005311 Ga0495686_0005311_4428_5183 244
14 3300006051 Ga0075364_10006876 Ga0075364_100068762 246
15 3300006177 Ga0075362_10014113 Ga0075362_100141132 246
16 3300009093 Ga0105240_10000466 Ga0105240_1000046655 246
17 3300010375 Ga0105239_10000385 Ga0105239_1000038536 246
18 3300025303 Ga0209051_1001877 Ga0209051_10018771 246
19 3300025913 Ga0207695_10000485 Ga0207695_1000048523 246
20 3300037471 Ga0395905_0067553 Ga0395905_0067553_1438_2223 246
21 3300045051 Ga0451576_0002774 Ga0451576_0002774_824_1627 246
22 3300050491 nmdc:mga00v17_2171_c2 nmdc:mga00v17_2171_c2_6322_7113 246
23 3300050516 nmdc:mga0sz30_36592_c1 nmdc:mga0sz30_36592_c1_745_1536 246
24 3300005355 Ga0070671_100080068 Ga0070671_1000800682 247
25 3300031548 Ga0307408_100037602 Ga0307408_1000376022 247
26 3300031901 Ga0307406_10017296 Ga0307406_100172963 247
27 3300032002 Ga0307416_100014293 Ga0307416_1000142932 247
28 3300048928 Ga0496125_0085911 Ga0496125_0085911_847_1629 247
29 3300049568 Ga0501031_0255522 Ga0501031_0255522_101_886 247
30 iso_pu_bacteria 2643221614 2644085219 247
31 iso_pu_bacteria 2643221661 2644342771 247
32 iso_pu_bacteria 2643221666 2644366071 247
33 3300013306 Ga0163162_10015303 Ga0163162_100153035 248
34 3300048903 Ga0496100_0352470 Ga0496100_0352470_89_889 248
35 3300048919 Ga0496116_0000011 Ga0496116_0000011_535034_535834 248
36 3300048920 Ga0496117_0060323 Ga0496117_0060323_127_927 248
37 3300048925 Ga0496122_0001816 Ga0496122_0001816_15843_16643 248
38 3300048926 Ga0496123_0001206 Ga0496123_0001206_27305_28105 248
39 3300048927 Ga0496124_0003000 Ga0496124_0003000_13243_14043 248
40 3300048928 Ga0496125_0005339 Ga0496125_0005339_7758_8558 248
41 3300048929 Ga0496126_0000556 Ga0496126_0000556_35945_36745 248
42 3300049579 Ga0501043_0049986 Ga0501043_0049986_1810_2613 248
43 3300053087 Ga0500643_000482 Ga0500643_000482_23958_24755 248
44 3300053178 Ga0500637_0000681 Ga0500637_0000681_10144_10938 248
45 iso_pu_bacteria 2928100450 2928104372 248
46 iso_pu_bacteria 2928959182 2928962975 248
47 3300005347 Ga0070668_100008591 Ga0070668_1000085915 249
48 3300025972 Ga0207668_10002073 Ga0207668_100020737 249
49 3300044693 Ga0466961_0026801 Ga0466961_0026801_2925_3674 249
50 3300048928 Ga0496125_0262113 Ga0496125_0262113_236_1024 249
51 3300049515 Ga0501292_000049 Ga0501292_000049_12422_13186 249
52 3300049690 Ga0501261_000013 Ga0501261_000013_87_851 249
53 3300049775 Ga0501279_000017 Ga0501279_000017_16541_17305 249
54 3300035691 Ga0373931_0023509 Ga0373931_0023509_1559_2341 250
55 3300039447 Ga0436361_0451651 Ga0436361_0451651_7401_8183 250
56 3300044656 Ga0466969_0066892 Ga0466969_0066892_327_1109 250
57 3300044684 Ga0466966_0008183 Ga0466966_0008183_3331_4113 250
58 3300045049 Ga0466959_0024366 Ga0466959_0024366_2072_2854 250
59 3300049822 Ga0501035_0001609 Ga0501035_0001609_5815_6594 250
60 3300050507 nmdc:mga05p37_288408_c1 nmdc:mga05p37_288408_c1_164_973 250
61 3300005331 Ga0070670_100055068 Ga0070670_1000550683 251
62 3300005347 Ga0070668_100006219 Ga0070668_1000062192 251
63 3300005347 Ga0070668_100011253 Ga0070668_1000112532 251
64 3300005353 Ga0070669_100254999 Ga0070669_1002549991 251
65 3300005466 Ga0070685_10018360 Ga0070685_100183602 251
66 3300005617 Ga0068859_100001942 Ga0068859_1000019423 251
67 3300005617 Ga0068859_100020201 Ga0068859_1000202012 251
68 3300005617 Ga0068859_100293163 Ga0068859_1002931632 251
69 3300005719 Ga0068861_100000007 Ga0068861_10000000720 251
70 3300005841 Ga0068863_100031996 Ga0068863_1000319962 251
71 3300005842 Ga0068858_100038930 Ga0068858_1000389302 251
72 3300005843 Ga0068860_100000104 Ga0068860_10000010455 251
73 3300005843 Ga0068860_100026529 Ga0068860_1000265294 251
74 3300005844 Ga0068862_100004389 Ga0068862_10000438912 251
75 3300005844 Ga0068862_100233036 Ga0068862_1002330362 251
76 3300005844 Ga0068862_100622285 Ga0068862_1006222851 251
77 3300006881 Ga0068865_100110258 Ga0068865_1001102582 251
78 3300006931 Ga0097620_100001942 Ga0097620_1000019423 251
79 3300006931 Ga0097620_100020200 Ga0097620_1000202002 251
80 3300006931 Ga0097620_100293147 Ga0097620_1002931472 251
81 3300009148 Ga0105243_10037680 Ga0105243_100376802 251
82 3300009177 Ga0105248_10000723 Ga0105248_1000072330 251
83 3300014325 Ga0163163_10402093 Ga0163163_104020932 251
84 3300014968 Ga0157379_10147629 Ga0157379_101476292 251
85 3300025925 Ga0207650_10040771 Ga0207650_100407712 251
86 3300025931 Ga0207644_10072522 Ga0207644_100725224 251
87 3300025935 Ga0207709_10032825 Ga0207709_100328252 251
88 3300025938 Ga0207704_10082111 Ga0207704_100821112 251
89 3300025972 Ga0207668_10104648 Ga0207668_101046482 251
90 3300025986 Ga0207658_10394207 Ga0207658_103942072 251
91 3300025986 Ga0207658_10546486 Ga0207658_105464861 251
92 3300026118 Ga0207675_100001249 Ga0207675_1000012496 251
93 3300028380 Ga0268265_10003268 Ga0268265_100032687 251
94 3300028380 Ga0268265_10587482 Ga0268265_105874822 251
95 3300028381 Ga0268264_10000008 Ga0268264_10000008431 251
96 3300028381 Ga0268264_10012766 Ga0268264_100127662 251
97 3300044694 Ga0466963_0007431 Ga0466963_0007431_4278_5060 251
98 3300044719 Ga0466971_0000149 Ga0466971_0000149_4215_4997 251
99 3300044842 Ga0466957_0018556 Ga0466957_0018556_3139_3921 251
100 3300045836 Ga0466958_0017639 Ga0466958_0017639_2166_2948 251
101 3300045976 Ga0466967_0225478 Ga0466967_0225478_590_1372 251
102 3300046512 Ga0495610_0000020 Ga0495610_0000020_149938_150720 251
103 3300046515 Ga0495620_0021397 Ga0495620_0021397_259_1041 251
104 3300046515 Ga0495620_0034324 Ga0495620_0034324_1435_2217 251
105 3300053177 Ga0500636_0043492 Ga0500636_0043492_1811_2584 251
106 3300061719 Ga0466962_0000260 Ga0466962_0000260_17250_18032 251
107 3300006048 Ga0075363_100000707 Ga0075363_1000007074 252
108 3300006186 Ga0075369_10004537 Ga0075369_100045372 252
109 3300006353 Ga0075370_10000026 Ga0075370_1000002611 252
110 3300006914 Ga0075436_100385997 Ga0075436_1003859971 252
111 3300046648 Ga0495611_0057696 Ga0495611_0057696_752_1534 252
112 3300050489 nmdc:mga03683_53_c1 nmdc:mga03683_53_c1_29547_30341 252
113 3300050490 nmdc:mga03n38_379_c1 nmdc:mga03n38_379_c1_8916_9710 252
114 3300050496 nmdc:mga07m45_30_c1 nmdc:mga07m45_30_c1_39688_40476 252
115 3300050514 nmdc:mga08x19_362610_c1 nmdc:mga08x19_362610_c1_129_917 252
116 3300050516 nmdc:mga0sz30_4274_c1 nmdc:mga0sz30_4274_c1_924_1718 252
117 3300005563 Ga0068855_100100789 Ga0068855_1001007892 253
118 3300009098 Ga0105245_10000357 Ga0105245_1000035731 253
119 3300013105 Ga0157369_10675691 Ga0157369_106756911 253
120 3300025927 Ga0207687_10000323 Ga0207687_1000032314 253
121 3300025949 Ga0207667_10105320 Ga0207667_101053202 253
122 3300031616 Ga0307508_10000960 Ga0307508_100009605 253
123 3300037312 Ga0395899_0000013 Ga0395899_0000013_123373_124161 253
124 3300048920 Ga0496117_0080213 Ga0496117_0080213_1054_1845 253
125 3300048921 Ga0496118_0004960 Ga0496118_0004960_13241_14032 253
126 3300048924 Ga0496121_0000170 Ga0496121_0000170_140351_141145 253
127 3300048924 Ga0496121_0000222 Ga0496121_0000222_104425_105216 253
128 3300048929 Ga0496126_0005957 Ga0496126_0005957_3355_4149 253
129 3300045049 Ga0466959_0104430 Ga0466959_0104430_49_840 254
130 iso_pu_bacteria 2599185359 2600224692 254
131 iso_pu_bacteria 2879163058 2879166258 254
132 3300026035 Ga0207703_10122414 Ga0207703_101224141 255
133 3300048919 Ga0496116_0029647 Ga0496116_0029647_677_1474 255
134 3300048920 Ga0496117_0023318 Ga0496117_0023318_2269_3066 255
135 3300048921 Ga0496118_0015565 Ga0496118_0015565_2508_3305 255
136 3300048924 Ga0496121_0000022 Ga0496121_0000022_123426_124217 255
137 3300005340 Ga0070689_100185345 Ga0070689_1001853452 256
138 3300005544 Ga0070686_100017880 Ga0070686_1000178802 256
139 3300005548 Ga0070665_100077587 Ga0070665_1000775873 256
140 3300005842 Ga0068858_100240835 Ga0068858_1002408352 256
141 3300025936 Ga0207670_10155638 Ga0207670_101556381 256
142 3300048915 Ga0496112_0178631 Ga0496112_0178631_1002_1820 256
143 3300048916 Ga0496113_0012633 Ga0496113_0012633_2493_3311 256
144 3300031616 Ga0307508_10003757 Ga0307508_100037576 259
145 iso_pu_bacteria 2818991466 2819713846 259
146 3300002459 JGI24751J29686_10000134 JGI24751J29686_1000013424 260

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00590

TP_methylase

Tetrapyrrole (Corrin/Porphyrin) Methylases

17

229

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
1pjs-assembly1.cif.gz_A the co-crystal structure of cysg, the multifunctional methyltransferase/dehydrogenase/ferrochelatase for siroheme synthesis, in complex with it nad cofactor 0.9539 2 233
6p7d-assembly1.cif.gz_A d104n s. typhimurium siroheme synthase 0.9536 2 233
6veb-assembly1.cif.gz_A precorrin-2-bound s128a s. typhimurium siroheme synthase 0.9528 2 233
6pqz-assembly1.cif.gz_A p133g/s128a s. typhimurium siroheme synthase 0.9523 2 233
6p5z-assembly1.cif.gz_A cobalt-sirohydrochlorin-bound s. typhimurium siroheme synthase 0.9512 2 232
ID Description Score Start End Superfamily
af_A0A0R0IWM0_102_225_3.40.1010.10 Alpha Beta;3-Layer(aba) Sandwich;Cobalt-precorrin-4 Transmethylase; domain 1;Tetrapyrrole methylase, N-terminal domain 0.9713 2 115 3.40.1010.10
1pjsA04 Alpha Beta;3-Layer(aba) Sandwich;Cobalt-precorrin-4 Transmethylase; domain 1;Tetrapyrrole methylase, N-terminal domain 0.9705 2 115 3.40.1010.10
1s4dE01 Alpha Beta;3-Layer(aba) Sandwich;Cobalt-precorrin-4 Transmethylase; domain 1;Tetrapyrrole methylase, N-terminal domain 0.9477 2 114 3.40.1010.10
af_Q2FVM0_1_122_3.40.1010.10 Alpha Beta;3-Layer(aba) Sandwich;Cobalt-precorrin-4 Transmethylase; domain 1;Tetrapyrrole methylase, N-terminal domain 0.9372 2 115 3.40.1010.10
1pjsB05 Alpha Beta;2-Layer Sandwich;Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2;Tetrapyrrole methylase, C-terminal domain 0.9324 117 233 3.30.950.10
ID Description Score Start End GO Terms
AF-A0A0T6XES6-F1-model_v4 Uncharacterized protein 0.9799 2 131 GO:0004851
GO:0009236
GO:0016829
GO:0019354
GO:0032259
GO:0043115
AF-A0A547PA75-F1-model_v4 uroporphyrinogen-III C-methyltransferase (EC 2.1.1.107) 0.9761 2 236 GO:0004851
GO:0019354
GO:0032259
AF-A0A435TUZ2-F1-model_v4 deleted 0.9752 2 139
AF-A0A1R3L513-F1-model_v4 uroporphyrinogen-III C-methyltransferase (EC 2.1.1.107) 0.974 2 115 GO:0004851
GO:0019354
GO:0032259
AF-A0A1Q3N5Z3-F1-model_v4 precorrin-2 dehydrogenase (EC 1.3.1.76) 0.9726 2 107 GO:0004325
GO:0008168
GO:0019354
GO:0043115

Feature Viewer

pLDDT pTM Quality
85.3 0.81 High
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Predicted Structure (AlphaFold2)

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