F197935

General Info

Members Datasets Scaffolds Average Seq Length
146 92 146 450

Family's Representative Sequence

Representative Sequence 3300028800|Ga0265338_10021561|Ga0265338_100215616
Length 416
Sequence MTFLPAPPNTGIRFRRLDLDGRPEIEARVENVTETVRSTTLAKGNVKVHTVEHVLATFAGFGIDNAIVELDANEPPVADGSAREYCKMVTAAGIVPQTEKRESYKVTTPIEMETGETLMSVFPHDRLKITCTSAGKNGRFTQLFSLEVTPETWLKELSAARTFCFFEEIEFLIKNGLIKGGSLENAVVIRDDAVLTNEPLRYPEEFVRHKMLDILGDLALIGRPLQGHVIAVRPSHTGNCAFGRQILAQMRKPIVAAQTFSREAALPAPTLKDGATLDVMQIMRILPHRYPFLMVDKVTHVEGNKLTGVKNVSVNEPYFQGHFPNHPIMPGVLQLEAMAQVAGILMLQQAENAGKLAYFMSAESVKWRRPVRPGDTLVIKVELVKTRGKIGKAKGVCSVEGEVVSEADVTFMLIDA

Samples

Sample ID Description Type Environment
1 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
2 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
3 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
4 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
5 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
6 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
7 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
8 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
9 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
10 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
11 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
12 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
13 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
14 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
15 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
16 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
17 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
18 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
19 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
20 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
21 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
22 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
23 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
24 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
25 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
26 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
27 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
28 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
29 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
30 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
31 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
32 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
33 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
34 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
35 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
36 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
37 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
38 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
39 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
40 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
41 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
42 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
43 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
44 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
45 3300035084 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 Metagenome Rhizosphere
46 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
47 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
48 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
49 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
50 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
51 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
52 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
53 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
54 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
55 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
56 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
57 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
58 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
59 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
60 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
61 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
62 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
63 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
64 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
65 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
66 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
67 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
68 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
69 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
70 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
71 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
72 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
73 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
74 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
75 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
76 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
77 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
78 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
79 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
80 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
81 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
82 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
83 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
84 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
85 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
86 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
87 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
88 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
89 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
90 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
91 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
92 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.68
Nodule 0
Rhizoplane 0.68
Rhizosphere 97.95
Stem 0
Stem Tuber 0
Unclassified 0.68

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10135351 3300003320 Bacteria 14175
2 Ga0070690_100007964 3300005330 Bacteria 6082
3 Ga0070689_100010396 3300005340 Bacteria 6632
4 Ga0070684_100220544 3300005535 Bacteria 1730
5 Ga0068855_100039765 3300005563 Bacteria 5583
6 Ga0068856_100000264 3300005614 Bacteria 57155
7 Ga0075428_100001854 3300006844 Bacteria 22650
8 Ga0075431_100016724 3300006847 Bacteria 7449
9 Ga0075434_100231277 3300006871 Unclassified 1868
10 Ga0105240_10014045 3300009093 Bacteria 10953
11 Ga0111539_10139304 3300009094 Bacteria 2841
12 Ga0111539_10157524 3300009094 Bacteria 2657
13 Ga0105242_10033750 3300009176 Bacteria 4100
14 Ga0105248_10253502 3300009177 Bacteria 1981
15 Ga0105238_10031846 3300009551 Bacteria 5365
16 Ga0105238_10091139 3300009551 Bacteria 3036
17 Ga0157374_10046206 3300013296 Bacteria 4031
18 Ga0163163_10000020 3300014325 Bacteria 196885
19 Ga0207695_10056289 3300025913 Bacteria 4093
20 Ga0207663_10054296 3300025916 Bacteria 2508
21 Ga0207694_10086352 3300025924 Bacteria 2471
22 Ga0207694_10155008 3300025924 Bacteria 1847
23 Ga0207670_10010178 3300025936 Bacteria 5406
24 Ga0207667_10047247 3300025949 Bacteria 4557
25 Ga0207702_10008861 3300026078 Bacteria 8481
26 Ga0207674_10112291 3300026116 Bacteria 2699
27 Ga0207428_10089102 3300027907 Bacteria 2398
28 Ga0265337_1001965 3300028556 Bacteria 9776
29 Ga0265337_1008285 3300028556 Bacteria 3796
30 Ga0265337_1010359 3300028556 Bacteria 3270
31 Ga0265337_1014210 3300028556 Unclassified 2645
32 Ga0265337_1034967 3300028556 Bacteria 1474
33 Ga0265326_10009988 3300028558 Bacteria 2830
34 Ga0265319_1000013 3300028563 Bacteria 180699
35 Ga0265334_10014060 3300028573 Bacteria 3343
36 Ga0265318_10004759 3300028577 Bacteria 6507
37 Ga0265323_10000055 3300028653 Bacteria 61774
38 Ga0265323_10020046 3300028653 Bacteria 2579
39 Ga0265336_10006094 3300028666 Bacteria 4375
40 Ga0265336_10031520 3300028666 Bacteria 1646
41 Ga0265338_10000008 3300028800 Bacteria 481542
42 Ga0265338_10000067 3300028800 Bacteria 186731
43 Ga0265338_10000158 3300028800 Bacteria 123828
44 Ga0265338_10001364 3300028800 Bacteria 39752
45 Ga0265338_10002734 3300028800 Bacteria 25885
46 Ga0265338_10002875 3300028800 Bacteria 25126
47 Ga0265338_10004601 3300028800 Bacteria 18557
48 Ga0265338_10004732 3300028800 Bacteria 18207
49 Ga0265338_10008572 3300028800 Bacteria 12373
50 Ga0265338_10017706 3300028800 Bacteria 7662
51 Ga0265338_10021561 3300028800 Bacteria 6712
52 Ga0265338_10027227 3300028800 Bacteria 5740
53 Ga0265338_10050370 3300028800 Bacteria 3765
54 Ga0265338_10052585 3300028800 Bacteria 3652
55 Ga0265338_10110746 3300028800 Bacteria 2212
56 Ga0265324_10000790 3300029957 Bacteria 20763
57 Ga0265324_10002603 3300029957 Bacteria 9063
58 Ga0265324_10006499 3300029957 Bacteria 4861
59 Ga0265324_10007040 3300029957 Bacteria 4616
60 Ga0265332_10031506 3300031238 Bacteria 2313
61 Ga0265320_10006721 3300031240 Bacteria 7225
62 Ga0265320_10007145 3300031240 Bacteria 6961
63 Ga0265320_10013938 3300031240 Bacteria 4606
64 Ga0265325_10017595 3300031241 Unclassified 3972
65 Ga0265340_10010333 3300031247 Bacteria 4992
66 Ga0265340_10017547 3300031247 Bacteria 3703
67 Ga0265339_10019254 3300031249 Bacteria 4010
68 Ga0265327_10002435 3300031251 Bacteria 19664
69 Ga0265327_10013476 3300031251 Bacteria 5428
70 Ga0265316_10001873 3300031344 Bacteria 22101
71 Ga0265316_10053288 3300031344 Bacteria 3170
72 Ga0265313_10009354 3300031595 Bacteria 6369
73 Ga0265314_10004733 3300031711 Bacteria 12484
74 Ga0265314_10029203 3300031711 Bacteria 4102
75 Ga0265342_10026454 3300031712 Unclassified 3636
76 Ga0373926_0018153 3300035083 Bacteria 2418
77 Ga0373928_0000022 3300035084 Bacteria 27033
78 Ga0373929_0000066 3300035085 Bacteria 17808
79 Ga0373944_0000026 3300035089 Bacteria 25249
80 Ga0373949_0001738 3300035090 Bacteria 6019
81 Ga0373951_0002577 3300035091 Bacteria 4555
82 Ga0373932_0000005 3300035112 Bacteria 259528
83 Ga0373954_0001966 3300035118 Bacteria 8524
84 Ga0373954_0005396 3300035118 Bacteria 5526
85 Ga0373956_0026255 3300035119 Bacteria 2522
86 Ga0373962_0000721 3300035242 Bacteria 7476
87 Ga0316574_0051827 3300035398 Bacteria 2558
88 Ga0373931_0000016 3300035691 Bacteria 217932
89 Ga0373927_0004185 3300035695 Bacteria 10137
90 Ga0373927_0076387 3300035695 Bacteria 2169
91 Ga0373947_0023539 3300035725 Bacteria 3584
92 Ga0373947_0081257 3300035725 Bacteria 2006
93 Ga0373937_0035771 3300036401 Bacteria 4522
94 Ga0373925_0000371 3300037068 Bacteria 46792
95 Ga0373925_0002682 3300037068 Bacteria 14120
96 Ga0451577_0002975 3300042876 Bacteria 19377
97 Ga0451577_0004822 3300042876 Bacteria 14089
98 Ga0451577_0009579 3300042876 Bacteria 9307
99 Ga0453684_0002396 3300044712 Bacteria 45712
100 Ga0453684_0012728 3300044712 Bacteria 13813
101 Ga0451576_0039500 3300045051 Bacteria 4995
102 Ga0451576_0058421 3300045051 Bacteria 4031
103 Ga0451576_0072613 3300045051 Bacteria 3581
104 Ga0451576_0093252 3300045051 Bacteria 3131
105 Ga0451576_0201062 3300045051 Bacteria 2081
106 Ga0451576_0276478 3300045051 Bacteria 1756
107 Ga0451576_0282323 3300045051 Unclassified 1736
108 Ga0451576_0305897 3300045051 Unclassified 1663
109 Ga0495629_0051765 3300046459 Bacteria 2874
110 Ga0495582_0027089 3300046473 Bacteria 3141
111 Ga0495664_0088571 3300046477 Bacteria 1860
112 Ga0495618_0004049 3300046514 Bacteria 9035
113 Ga0495618_0154852 3300046514 Bacteria 1463
114 Ga0495628_0094163 3300046516 Bacteria 2316
115 Ga0495630_0127631 3300046517 Bacteria 1930
116 Ga0495630_0134696 3300046517 Bacteria 1877
117 Ga0495652_0054409 3300046529 Bacteria 3408
118 Ga0495640_0063053 3300046533 Bacteria 2512
119 Ga0495586_0006316 3300046535 Bacteria 6330
120 Ga0495586_0018468 3300046535 Bacteria 3713
121 Ga0495622_0009681 3300046557 Bacteria 4457
122 Ga0495634_0006447 3300046642 Bacteria 8915
123 Ga0495647_0016855 3300046681 Bacteria 2579
124 Ga0495658_0018931 3300046683 Bacteria 3588
125 Ga0495613_0008090 3300046689 Bacteria 7818
126 Ga0495613_0018015 3300046689 Bacteria 5263
127 Ga0495674_0082489 3300047319 Bacteria 2757
128 Ga0495676_0027776 3300047321 Bacteria 4848
129 Ga0495684_0064594 3300047471 Bacteria 2782
130 Ga0495684_0110404 3300047471 Bacteria 2075
131 Ga0496107_0044533 3300048910 Bacteria 3190
132 Ga0501031_0001479 3300049568 Bacteria 14597
133 Ga0501032_0005453 3300049569 Bacteria 9443
134 Ga0501032_0041626 3300049569 Bacteria 3119
135 Ga0501033_0005535 3300049570 Bacteria 9990
136 Ga0501037_0030243 3300049573 Bacteria 4003
137 Ga0501080_0017581 3300049742 Bacteria 6612
138 Ga0501035_0063497 3300049822 Bacteria 3284
139 Ga0501035_0171780 3300049822 Bacteria 1872
140 Ga0501044_0002137 3300049823 Bacteria 22644
141 Ga0501044_0078182 3300049823 Bacteria 3353
142 nmdc:mga06r32_36663_c1 3300050510 Bacteria 4636
143 nmdc:mga08y16_126457_c1 3300050511 Bacteria 2659
144 nmdc:mga0n895_212002_c1 3300050512 Unclassified 1967
145 Ga0495601_0055104 3300053077 Bacteria 2517
146 Ga0500650_0025804 3300053098 Unclassified 2630

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300025913 Ga0207695_10056289 Ga0207695_100562892 404
2 3300026116 Ga0207674_10112291 Ga0207674_101122914 411
3 3300028800 Ga0265338_10021561 Ga0265338_100215616 414
4 3300009094 Ga0111539_10139304 Ga0111539_101393042 415
5 3300031251 Ga0265327_10002435 Ga0265327_100024354 417
6 3300045051 Ga0451576_0282323 Ga0451576_0282323_48_1391 417
7 3300005330 Ga0070690_100007964 Ga0070690_1000079646 418
8 3300025936 Ga0207670_10010178 Ga0207670_100101782 418
9 3300028800 Ga0265338_10000067 Ga0265338_1000006795 418
10 3300029957 Ga0265324_10000790 Ga0265324_100007908 418
11 3300035695 Ga0373927_0076387 Ga0373927_0076387_22_1281 418
12 3300045051 Ga0451576_0072613 Ga0451576_0072613_1600_2883 418
13 3300046514 Ga0495618_0154852 Ga0495618_0154852_170_1444 418
14 3300028573 Ga0265334_10014060 Ga0265334_100140604 419
15 3300028556 Ga0265337_1034967 Ga0265337_10349671 424
16 3300009093 Ga0105240_10014045 Ga0105240_100140458 429
17 3300042876 Ga0451577_0004822 Ga0451577_0004822_6937_8343 431
18 3300042876 Ga0451577_0009579 Ga0451577_0009579_3079_4425 431
19 3300006844 Ga0075428_100001854 Ga0075428_10000185410 432
20 3300009094 Ga0111539_10157524 Ga0111539_101575242 432
21 3300009551 Ga0105238_10031846 Ga0105238_100318467 432
22 3300025924 Ga0207694_10155008 Ga0207694_101550082 432
23 3300027907 Ga0207428_10089102 Ga0207428_100891022 432
24 3300050511 nmdc:mga08y16_126457_c1 nmdc:mga08y16_126457_c1_497_1891 432
25 3300031247 Ga0265340_10017547 Ga0265340_100175472 435
26 3300049569 Ga0501032_0041626 Ga0501032_0041626_706_2082 435
27 3300049822 Ga0501035_0063497 Ga0501035_0063497_1345_2721 435
28 3300049823 Ga0501044_0078182 Ga0501044_0078182_918_2294 435
29 3300045051 Ga0451576_0201062 Ga0451576_0201062_373_1743 436
30 3300045051 Ga0451576_0039500 Ga0451576_0039500_734_2086 437
31 3300031247 Ga0265340_10010333 Ga0265340_100103332 438
32 3300035398 Ga0316574_0051827 Ga0316574_0051827_726_2081 438
33 3300045051 Ga0451576_0093252 Ga0451576_0093252_781_2289 438
34 3300013296 Ga0157374_10046206 Ga0157374_100462063 439
35 3300042876 Ga0451577_0002975 Ga0451577_0002975_1022_2380 439
36 3300044712 Ga0453684_0002396 Ga0453684_0002396_16810_18159 439
37 3300044712 Ga0453684_0012728 Ga0453684_0012728_9115_10473 439
38 3300045051 Ga0451576_0058421 Ga0451576_0058421_754_2112 439
39 3300045051 Ga0451576_0305897 Ga0451576_0305897_27_1379 439
40 3300009176 Ga0105242_10033750 Ga0105242_100337502 440
41 3300029957 Ga0265324_10007040 Ga0265324_100070404 441
42 3300035083 Ga0373926_0018153 Ga0373926_0018153_953_2305 441
43 3300035695 Ga0373927_0004185 Ga0373927_0004185_4599_5951 441
44 3300035725 Ga0373947_0081257 Ga0373947_0081257_447_1799 441
45 3300037068 Ga0373925_0002682 Ga0373925_0002682_3012_4370 441
46 3300005535 Ga0070684_100220544 Ga0070684_1002205441 442
47 3300009177 Ga0105248_10253502 Ga0105248_102535021 442
48 3300028558 Ga0265326_10009988 Ga0265326_100099881 442
49 3300028800 Ga0265338_10001364 Ga0265338_1000136420 442
50 3300028800 Ga0265338_10017706 Ga0265338_100177067 442
51 3300031251 Ga0265327_10013476 Ga0265327_100134764 442
52 3300048910 Ga0496107_0044533 Ga0496107_0044533_423_1781 442
53 3300049742 Ga0501080_0017581 Ga0501080_0017581_4491_5822 442
54 3300053098 Ga0500650_0025804 Ga0500650_0025804_980_2359 442
55 3300005340 Ga0070689_100010396 Ga0070689_1000103965 443
56 3300005563 Ga0068855_100039765 Ga0068855_1000397654 443
57 3300005614 Ga0068856_100000264 Ga0068856_10000026418 443
58 3300009551 Ga0105238_10091139 Ga0105238_100911391 443
59 3300014325 Ga0163163_10000020 Ga0163163_1000002033 443
60 3300025924 Ga0207694_10086352 Ga0207694_100863521 443
61 3300025949 Ga0207667_10047247 Ga0207667_100472475 443
62 3300026078 Ga0207702_10008861 Ga0207702_100088615 443
63 3300028556 Ga0265337_1010359 Ga0265337_10103593 443
64 3300028556 Ga0265337_1014210 Ga0265337_10142102 443
65 3300028563 Ga0265319_1000013 Ga0265319_100001377 443
66 3300028577 Ga0265318_10004759 Ga0265318_100047595 443
67 3300028653 Ga0265323_10000055 Ga0265323_1000005546 443
68 3300028653 Ga0265323_10020046 Ga0265323_100200461 443
69 3300028800 Ga0265338_10000008 Ga0265338_10000008195 443
70 3300028800 Ga0265338_10000158 Ga0265338_1000015861 443
71 3300028800 Ga0265338_10008572 Ga0265338_1000857213 443
72 3300028800 Ga0265338_10027227 Ga0265338_100272272 443
73 3300029957 Ga0265324_10002603 Ga0265324_100026035 443
74 3300029957 Ga0265324_10006499 Ga0265324_100064994 443
75 3300031240 Ga0265320_10006721 Ga0265320_100067213 443
76 3300031240 Ga0265320_10007145 Ga0265320_100071455 443
77 3300031241 Ga0265325_10017595 Ga0265325_100175952 443
78 3300031249 Ga0265339_10019254 Ga0265339_100192544 443
79 3300031344 Ga0265316_10053288 Ga0265316_100532883 443
80 3300031595 Ga0265313_10009354 Ga0265313_100093546 443
81 3300031711 Ga0265314_10004733 Ga0265314_1000473310 443
82 3300031712 Ga0265342_10026454 Ga0265342_100264544 443
83 3300035084 Ga0373928_0000022 Ga0373928_0000022_9120_10496 443
84 3300035085 Ga0373929_0000066 Ga0373929_0000066_10068_11444 443
85 3300035089 Ga0373944_0000026 Ga0373944_0000026_19199_20575 443
86 3300035090 Ga0373949_0001738 Ga0373949_0001738_2887_4263 443
87 3300035091 Ga0373951_0002577 Ga0373951_0002577_2951_4327 443
88 3300035112 Ga0373932_0000005 Ga0373932_0000005_127063_128439 443
89 3300035118 Ga0373954_0001966 Ga0373954_0001966_4461_5795 443
90 3300035118 Ga0373954_0005396 Ga0373954_0005396_3300_4670 443
91 3300035119 Ga0373956_0026255 Ga0373956_0026255_142_1476 443
92 3300035242 Ga0373962_0000721 Ga0373962_0000721_792_2168 443
93 3300035691 Ga0373931_0000016 Ga0373931_0000016_131090_132466 443
94 3300035725 Ga0373947_0023539 Ga0373947_0023539_2164_3540 443
95 3300036401 Ga0373937_0035771 Ga0373937_0035771_1758_3092 443
96 3300037068 Ga0373925_0000371 Ga0373925_0000371_28330_29706 443
97 3300046459 Ga0495629_0051765 Ga0495629_0051765_507_1841 443
98 3300046473 Ga0495582_0027089 Ga0495582_0027089_371_1741 443
99 3300046514 Ga0495618_0004049 Ga0495618_0004049_2923_4257 443
100 3300046517 Ga0495630_0134696 Ga0495630_0134696_211_1581 443
101 3300046533 Ga0495640_0063053 Ga0495640_0063053_504_1874 443
102 3300046535 Ga0495586_0006316 Ga0495586_0006316_3760_5130 443
103 3300046535 Ga0495586_0018468 Ga0495586_0018468_2030_3364 443
104 3300046557 Ga0495622_0009681 Ga0495622_0009681_934_2307 443
105 3300046642 Ga0495634_0006447 Ga0495634_0006447_5969_7303 443
106 3300046681 Ga0495647_0016855 Ga0495647_0016855_1021_2391 443
107 3300046683 Ga0495658_0018931 Ga0495658_0018931_623_1993 443
108 3300046689 Ga0495613_0008090 Ga0495613_0008090_4823_6193 443
109 3300046689 Ga0495613_0018015 Ga0495613_0018015_2287_3621 443
110 3300047321 Ga0495676_0027776 Ga0495676_0027776_1659_3029 443
111 3300047471 Ga0495684_0064594 Ga0495684_0064594_954_2288 443
112 3300006871 Ga0075434_100231277 Ga0075434_1002312772 444
113 3300025916 Ga0207663_10054296 Ga0207663_100542963 444
114 3300028556 Ga0265337_1001965 Ga0265337_10019653 444
115 3300028556 Ga0265337_1008285 Ga0265337_10082853 444
116 3300028666 Ga0265336_10006094 Ga0265336_100060942 444
117 3300028666 Ga0265336_10031520 Ga0265336_100315202 444
118 3300028800 Ga0265338_10002734 Ga0265338_100027343 444
119 3300028800 Ga0265338_10002875 Ga0265338_100028752 444
120 3300028800 Ga0265338_10004732 Ga0265338_1000473215 444
121 3300028800 Ga0265338_10050370 Ga0265338_100503702 444
122 3300028800 Ga0265338_10052585 Ga0265338_100525855 444
123 3300028800 Ga0265338_10110746 Ga0265338_101107462 444
124 3300031238 Ga0265332_10031506 Ga0265332_100315062 444
125 3300031240 Ga0265320_10013938 Ga0265320_100139384 444
126 3300031711 Ga0265314_10029203 Ga0265314_100292032 444
127 3300045051 Ga0451576_0276478 Ga0451576_0276478_106_1479 444
128 3300046477 Ga0495664_0088571 Ga0495664_0088571_330_1703 444
129 3300046516 Ga0495628_0094163 Ga0495628_0094163_834_2207 444
130 3300046517 Ga0495630_0127631 Ga0495630_0127631_224_1597 444
131 3300046529 Ga0495652_0054409 Ga0495652_0054409_185_1558 444
132 3300047319 Ga0495674_0082489 Ga0495674_0082489_1206_2579 444
133 3300047471 Ga0495684_0110404 Ga0495684_0110404_96_1469 444
134 3300049568 Ga0501031_0001479 Ga0501031_0001479_5343_6722 444
135 3300049569 Ga0501032_0005453 Ga0501032_0005453_1606_2985 444
136 3300049570 Ga0501033_0005535 Ga0501033_0005535_6887_8266 444
137 3300049573 Ga0501037_0030243 Ga0501037_0030243_1894_3273 444
138 3300049822 Ga0501035_0171780 Ga0501035_0171780_372_1751 444
139 3300049823 Ga0501044_0002137 Ga0501044_0002137_7940_9319 444
140 3300050512 nmdc:mga0n895_212002_c1 nmdc:mga0n895_212002_c1_238_1596 444
141 3300003320 rootH2_10135351 rootH2_101353515 445
142 3300006847 Ga0075431_100016724 Ga0075431_1000167244 445
143 3300028800 Ga0265338_10004601 Ga0265338_100046011 445
144 3300031344 Ga0265316_10001873 Ga0265316_1000187317 445
145 3300050510 nmdc:mga06r32_36663_c1 nmdc:mga06r32_36663_c1_3070_4503 445
146 3300053077 Ga0495601_0055104 Ga0495601_0055104_435_1850 445

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03331

LpxC

UDP-3-O-acyl N-acetylglycosamine deacetylase

1

248

0.98

PF07977

FabA

FabA-like domain

286

408

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
7k99-assembly2.cif.gz_C crystal structure of p. aeruginosa lpxc with n-hydroxyformamide inhibitor 19 0.9077 1 276
4okg-assembly2.cif.gz_B lpxc from p.aeruginosa with the inhibitor 6-(benzimidazol-1-yl)-5-[4-[2-[6-[(4-methylpiperazin-1-yl)methyl]-3-pyridyl]ethynyl]phenyl]pyridine-3-carbohydroxamic acid 0.9069 1 276
7ci8-assembly2.cif.gz_B crystal structure of p.aeruginosa lpxc in complex with inhibitor 0.9057 1 273
7k9a-assembly2.cif.gz_C crystal structure of p. aeruginosa lpxc with n-hydroxyformamide inhibitor 0.9019 1 273
5u3b-assembly2.cif.gz_B pseudomonas aeruginosa lpxc in complex with nvs-lpxc-01 0.9004 1 276
ID Description Score Start End Superfamily
3p3gA01 Alpha Beta;2-Layer Sandwich;Ribosomal Protein S5; domain 2;lpxc deacetylase, domain 1 0.9585 1 127 3.30.230.20
3p3gA01 Alpha Beta;2-Layer Sandwich;Ribosomal Protein S5; domain 2;lpxc deacetylase, domain 1 0.9441 1 127 3.30.230.20
af_Q10PS1_24_147_3.30.230.20 Alpha Beta;2-Layer Sandwich;Ribosomal Protein S5; domain 2;lpxc deacetylase, domain 1 0.9133 2 125 3.30.230.20
af_Q10PS1_24_147_3.30.230.20 Alpha Beta;2-Layer Sandwich;Ribosomal Protein S5; domain 2;lpxc deacetylase, domain 1 0.9064 2 125 3.30.230.20
4zw0B00 Alpha Beta;Roll;Thiol Ester Dehydrase; Chain A;Hotdog Thioesterase 0.8843 301 439 3.10.129.10
ID Description Score Start End GO Terms
AF-A0A7V9P8J7-F1-model_v4 UDP-3-O-acyl-N-acetylglucosamine deacetylase 0.9786 2 129 GO:0009245
GO:0016020
GO:0103117
AF-A0A2V5RU94-F1-model_v4 UDP-3-O-acyl-N-acetylglucosamine deacetylase (EC 3.5.1.108) 0.978 3 189 GO:0009245
GO:0016020
GO:0046872
GO:0103117
AF-A0A356KG56-F1-model_v4 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 0.9761 4 118 GO:0009245
GO:0016020
GO:0103117
AF-A0A1I8AMA8-F1-model_v4 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 0.9756 1 99 GO:0009245
GO:0016020
GO:0103117
AF-W7WXB8-F1-model_v4 deleted 0.9754 1 140

Feature Viewer

pLDDT pTM Quality
81.06 0.63 Medium
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Predicted Structure (AlphaFold2)

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