F196983

General Info

Members Datasets Scaffolds Average Seq Length
146 73 292 595

Family's Representative Sequence

Representative Sequence 3300005530|Ga0070679_100017395|Ga0070679_1000173954
Length 649
Sequence MGENIIILKHIQESFLLYVSGDSEKILQLALFRPLLNLGFVAKFDIQGRQGLYFMEIRNIAIIAHVDHGKTTLTDAILRQTGAEKEGVSMDSNNLERERGITIYAKNASIFYKGTKVNIVDTPGHADFGSEVERVLRSIDSVLLVVDAQEGPMPQTRFVLKKSLELGLRPIVVINKIDKPAADPKRAEDQVFELFLELGANDEQADFPIVYAIGREGVAMKKLDDERKDLTPLLDTVLERVMPASSDELLAKPLRLQPFNLAYDNYLGRMAVARIYEGSIKPGMNVFVNKPEGTSRAGKIIKVFSFEGLQRKETEEAGAGDIVMVAGIPDIEIGETIAANADAETLPAIAVDEPTITMDFLVNNSPFGGREGKFVTSRQLRERLEKELEINVGLRIDFSSGDTYKVSGRGELHIAILLENMRREGYEMQVSQPQVIMREENGVKTEPFEEVIIDTPSEFQGPIIEKLGQRGFIMTNLVPEDVTVRLTFEGPTRGLLGYRNQFVIDTKGEGIMSSRVIGFRHFSGTIQKRATGSMTSMATGKALGYSLWNLQERGTLYIPAGIEVYEGMVIGNTSKGEEMAVNPTKNKNLTNVRASASDDAIILTPPYELSIERGLEIMNDDEYLEITPSSVRLRKKLLTEVDRAKAKRQ

Samples

Sample ID Description Type Environment
1 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
2 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
3 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
4 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
5 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
6 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
7 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
8 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
9 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
10 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
11 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
12 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
13 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
14 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
15 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
16 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
17 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
18 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
19 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
20 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
21 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
23 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
24 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
26 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
27 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
28 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
29 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
30 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
31 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
32 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
33 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
34 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
35 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
36 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
37 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
38 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
39 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
40 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
41 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
42 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
43 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
44 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
45 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
46 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
47 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
48 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
49 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
50 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
51 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
52 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
53 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
54 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
55 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
56 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
57 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
58 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
59 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
60 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
61 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
62 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
63 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
64 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
65 3300049688 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_A_4_drought Metagenome Rhizosphere
66 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
67 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
68 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
69 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
70 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
71 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
72 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
73 2740891818 Desulfofaba hansenii DSM 12642 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 99.32
Metatranscriptomes 0
Isolates 0.68

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.74
Nodule 0
Rhizoplane 0
Rhizosphere 95.89
Stem 0
Stem Tuber 0
Unclassified 1.37

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070679_100017395 3300005530 Bacteria 6958
2 Ga0070671_100022590 3300005355 Bacteria 5138
3 Ga0070667_100000412 3300005367 Bacteria 45730
4 Ga0070711_100000016 3300005439 Bacteria 153972
5 Ga0070681_10000277 3300005458 Bacteria 41097
6 Ga0070681_10038167 3300005458 Bacteria 4817
7 Ga0070679_100026315 3300005530 Bacteria 5714
8 Ga0070679_100040304 3300005530 Bacteria 4647
9 Ga0070665_100013297 3300005548 Bacteria 8286
10 Ga0070704_100000001 3300005549 Bacteria 193214
11 Ga0068855_100004585 3300005563 Bacteria 16876
12 Ga0068856_100011804 3300005614 Bacteria 8467
13 Ga0068856_100130244 3300005614 Bacteria 2520
14 Ga0068860_100000180 3300005843 Bacteria 102463
15 Ga0075436_100005162 3300006914 Bacteria 8988
16 Ga0099794_10021847 3300007265 Bacteria 2911
17 Ga0105240_10004375 3300009093 Bacteria 21565
18 Ga0105240_10068120 3300009093 Bacteria 4409
19 Ga0105238_10002088 3300009551 Bacteria 20167
20 Ga0105239_10015456 3300010375 Bacteria 8455
21 Ga0207707_10000009 3300025912 Bacteria 300141
22 Ga0207707_10000010 3300025912 Bacteria 295156
23 Ga0207707_10000125 3300025912 Bacteria 79965
24 Ga0207695_10043311 3300025913 Bacteria 4798
25 Ga0207663_10000002 3300025916 Bacteria 534155
26 Ga0207652_10009592 3300025921 Bacteria 7784
27 Ga0207652_10011466 3300025921 Bacteria 7145
28 Ga0207652_10012094 3300025921 Bacteria 6968
29 Ga0207652_10051543 3300025921 Bacteria 3528
30 Ga0207694_10009914 3300025924 Bacteria 7189
31 Ga0207644_10052647 3300025931 Bacteria 2926
32 Ga0207702_10101572 3300026078 Bacteria 2540
33 Ga0207702_10126561 3300026078 Bacteria 2295
34 Ga0209588_1000469 3300027671 Bacteria 10369
35 Ga0268266_10108132 3300028379 Bacteria 2460
36 Ga0268264_10000259 3300028381 Bacteria 95725
37 Ga0265334_10012631 3300028573 Bacteria 3547
38 Ga0265318_10006428 3300028577 Bacteria 5412
39 Ga0265323_10011722 3300028653 Bacteria 3530
40 Ga0265336_10000046 3300028666 Bacteria 127637
41 Ga0265338_10000002 3300028800 Bacteria 856588
42 Ga0265338_10000164 3300028800 Bacteria 121166
43 Ga0265338_10000298 3300028800 Bacteria 89483
44 Ga0265338_10000588 3300028800 Bacteria 64114
45 Ga0265338_10000964 3300028800 Bacteria 48471
46 Ga0265338_10002149 3300028800 Bacteria 30287
47 Ga0265338_10010326 3300028800 Bacteria 10964
48 Ga0265338_10017175 3300028800 Bacteria 7818
49 Ga0265338_10040617 3300028800 Bacteria 4367
50 Ga0265338_10041996 3300028800 Bacteria 4267
51 Ga0265338_10129295 3300028800 Bacteria 1998
52 Ga0265330_10000979 3300031235 Bacteria 17473
53 Ga0265332_10004663 3300031238 Bacteria 6404
54 Ga0265340_10000905 3300031247 Bacteria 16806
55 Ga0265339_10006007 3300031249 Bacteria 8024
56 Ga0265331_10000365 3300031250 Bacteria 47433
57 Ga0265327_10000162 3300031251 Bacteria 144118
58 Ga0265327_10000828 3300031251 Bacteria 46477
59 Ga0265316_10000199 3300031344 Bacteria 69717
60 Ga0265316_10003716 3300031344 Bacteria 15361
61 Ga0265316_10015248 3300031344 Bacteria 6727
62 Ga0265316_10027188 3300031344 Bacteria 4742
63 Ga0265316_10099271 3300031344 Bacteria 2215
64 Ga0265313_10018155 3300031595 Bacteria 3962
65 Ga0316579_10027543 3300031691 Bacteria 2581
66 Ga0265314_10010349 3300031711 Bacteria 7787
67 Ga0265342_10000244 3300031712 Bacteria 61007
68 Ga0265342_10009609 3300031712 Bacteria 6790
69 Ga0307411_10003893 3300032005 Bacteria 7037
70 Ga0373925_0082515 3300037068 Bacteria 2447
71 Ga0400490_18294 3300038726 Bacteria 3686
72 Ga0451577_0000003 3300042876 Bacteria 921850
73 Ga0451577_0000039 3300042876 Bacteria 346861
74 Ga0451577_0000273 3300042876 Bacteria 101034
75 Ga0451577_0028405 3300042876 Bacteria 5059
76 Ga0453684_0000018 3300044712 Bacteria 921850
77 Ga0453684_0000030 3300044712 Bacteria 752725
78 Ga0453684_0000041 3300044712 Bacteria 690022
79 Ga0453684_0000042 3300044712 Bacteria 682980
80 Ga0453684_0000112 3300044712 Bacteria 359823
81 Ga0453684_0000175 3300044712 Bacteria 283848
82 Ga0453684_0000182 3300044712 Bacteria 279010
83 Ga0453684_0003582 3300044712 Bacteria 34661
84 Ga0453684_0008937 3300044712 Bacteria 17730
85 Ga0453684_0031276 3300044712 Bacteria 7487
86 Ga0453684_0069457 3300044712 Bacteria 4468
87 Ga0453684_0115340 3300044712 Bacteria 3255
88 Ga0453684_0168522 3300044712 Unclassified 2583
89 Ga0451576_0000028 3300045051 Unclassified 408351
90 Ga0451576_0000062 3300045051 Bacteria 284262
91 Ga0451576_0000110 3300045051 Bacteria 210334
92 Ga0451576_0000973 3300045051 Bacteria 53386
93 Ga0451576_0003325 3300045051 Bacteria 22288
94 Ga0451576_0005588 3300045051 Bacteria 15709
95 Ga0451576_0009024 3300045051 Bacteria 11612
96 Ga0451576_0010475 3300045051 Bacteria 10630
97 Ga0451576_0018384 3300045051 Bacteria 7663
98 Ga0451576_0019668 3300045051 Bacteria 7368
99 Ga0451576_0032261 3300045051 Bacteria 5581
100 Ga0451576_0088164 3300045051 Bacteria 3228
101 Ga0495616_0043308 3300046513 Bacteria 2287
102 Ga0501031_0000963 3300049568 Bacteria 17457
103 Ga0501032_0007567 3300049569 Bacteria 7932
104 Ga0501032_0040101 3300049569 Bacteria 3184
105 Ga0501033_0044719 3300049570 Bacteria 3296
106 Ga0501034_0000006 3300049571 Bacteria 358887
107 Ga0501034_0000246 3300049571 Bacteria 100202
108 Ga0501034_0000654 3300049571 Bacteria 53285
109 Ga0501034_0003367 3300049571 Bacteria 18244
110 Ga0501034_0041962 3300049571 Bacteria 4630
111 Ga0501034_0058921 3300049571 Bacteria 3858
112 Ga0501034_0065385 3300049571 Bacteria 3649
113 Ga0501034_0095637 3300049571 Bacteria 2967
114 Ga0501037_0000770 3300049573 Bacteria 24105
115 Ga0501037_0011341 3300049573 Bacteria 6561
116 Ga0501037_0017753 3300049573 Bacteria 5236
117 Ga0501038_0007378 3300049574 Bacteria 10142
118 Ga0501038_0138706 3300049574 Bacteria 1991
119 Ga0501039_0000135 3300049575 Bacteria 50642
120 Ga0501039_0079779 3300049575 Bacteria 2546
121 Ga0501040_0000526 3300049576 Bacteria 23036
122 Ga0501042_0008456 3300049578 Bacteria 6796
123 Ga0501043_0000001 3300049579 Bacteria 479879
124 Ga0501043_0007150 3300049579 Bacteria 8880
125 Ga0501046_0003624 3300049580 Bacteria 14147
126 Ga0501047_0005003 3300049581 Bacteria 12443
127 Ga0501047_0048329 3300049581 Bacteria 4108
128 Ga0501047_0051008 3300049581 Bacteria 3996
129 Ga0501067_0000559 3300049583 Bacteria 20118
130 Ga0501070_0004375 3300049586 Bacteria 12141
131 Ga0501073_0000001 3300049589 Bacteria 677932
132 Ga0501073_0055984 3300049589 Bacteria 2759
133 Ga0501074_0001082 3300049590 Bacteria 17795
134 Ga0501074_0064400 3300049590 Bacteria 2639
135 Ga0501259_000628 3300049688 Bacteria 5668
136 Ga0501080_0001998 3300049742 Bacteria 17605
137 Ga0501080_0025981 3300049742 Bacteria 5441
138 Ga0501083_0000624 3300049744 Bacteria 22863
139 nmdc:mga08x19_3795_c1 3300050514 Bacteria 8989
140 Ga0500556_0001338 3300053104 Bacteria 10894
141 Ga0500556_0004549 3300053104 Bacteria 3949
142 Ga0500568_0013336 3300053139 Bacteria 3750
143 Ga0500616_0000039 3300053153 Bacteria 383915
144 Ga0501082_0000001 3300060353 Bacteria 209420
145 Ga0501082_0001288 3300060353 Bacteria 21985
146 2740992229 2740891818 Bacteria 6711283
147 Ga0070679_100017395
148 Ga0070671_100022590
149 Ga0070667_100000412
150 Ga0070711_100000016
151 Ga0070681_10000277
152 Ga0070681_10038167
153 Ga0070679_100026315
154 Ga0070679_100040304
155 Ga0070665_100013297
156 Ga0070704_100000001
157 Ga0068855_100004585
158 Ga0068856_100011804
159 Ga0068856_100130244
160 Ga0068860_100000180
161 Ga0075436_100005162
162 Ga0099794_10021847
163 Ga0105240_10004375
164 Ga0105240_10068120
165 Ga0105238_10002088
166 Ga0105239_10015456
167 Ga0207707_10000009
168 Ga0207707_10000010
169 Ga0207707_10000125
170 Ga0207695_10043311
171 Ga0207663_10000002
172 Ga0207652_10009592
173 Ga0207652_10011466
174 Ga0207652_10012094
175 Ga0207652_10051543
176 Ga0207694_10009914
177 Ga0207644_10052647
178 Ga0207702_10101572
179 Ga0207702_10126561
180 Ga0209588_1000469
181 Ga0268266_10108132
182 Ga0268264_10000259
183 Ga0265334_10012631
184 Ga0265318_10006428
185 Ga0265323_10011722
186 Ga0265336_10000046
187 Ga0265338_10000002
188 Ga0265338_10000164
189 Ga0265338_10000298
190 Ga0265338_10000588
191 Ga0265338_10000964
192 Ga0265338_10002149
193 Ga0265338_10010326
194 Ga0265338_10017175
195 Ga0265338_10040617
196 Ga0265338_10041996
197 Ga0265338_10129295
198 Ga0265330_10000979
199 Ga0265332_10004663
200 Ga0265340_10000905
201 Ga0265339_10006007
202 Ga0265331_10000365
203 Ga0265327_10000162
204 Ga0265327_10000828
205 Ga0265316_10000199
206 Ga0265316_10003716
207 Ga0265316_10015248
208 Ga0265316_10027188
209 Ga0265316_10099271
210 Ga0265313_10018155
211 Ga0316579_10027543
212 Ga0265314_10010349
213 Ga0265342_10000244
214 Ga0265342_10009609
215 Ga0307411_10003893
216 Ga0373925_0082515
217 Ga0400490_18294
218 Ga0451577_0000003
219 Ga0451577_0000039
220 Ga0451577_0000273
221 Ga0451577_0028405
222 Ga0453684_0000018
223 Ga0453684_0000030
224 Ga0453684_0000041
225 Ga0453684_0000042
226 Ga0453684_0000112
227 Ga0453684_0000175
228 Ga0453684_0000182
229 Ga0453684_0003582
230 Ga0453684_0008937
231 Ga0453684_0031276
232 Ga0453684_0069457
233 Ga0453684_0115340
234 Ga0453684_0168522
235 Ga0451576_0000028
236 Ga0451576_0000062
237 Ga0451576_0000110
238 Ga0451576_0000973
239 Ga0451576_0003325
240 Ga0451576_0005588
241 Ga0451576_0009024
242 Ga0451576_0010475
243 Ga0451576_0018384
244 Ga0451576_0019668
245 Ga0451576_0032261
246 Ga0451576_0088164
247 Ga0495616_0043308
248 Ga0501031_0000963
249 Ga0501032_0007567
250 Ga0501032_0040101
251 Ga0501033_0044719
252 Ga0501034_0000006
253 Ga0501034_0000246
254 Ga0501034_0000654
255 Ga0501034_0003367
256 Ga0501034_0041962
257 Ga0501034_0058921
258 Ga0501034_0065385
259 Ga0501034_0095637
260 Ga0501037_0000770
261 Ga0501037_0011341
262 Ga0501037_0017753
263 Ga0501038_0007378
264 Ga0501038_0138706
265 Ga0501039_0000135
266 Ga0501039_0079779
267 Ga0501040_0000526
268 Ga0501042_0008456
269 Ga0501043_0000001
270 Ga0501043_0007150
271 Ga0501046_0003624
272 Ga0501047_0005003
273 Ga0501047_0048329
274 Ga0501047_0051008
275 Ga0501067_0000559
276 Ga0501070_0004375
277 Ga0501073_0000001
278 Ga0501073_0055984
279 Ga0501074_0001082
280 Ga0501074_0064400
281 Ga0501259_000628
282 Ga0501080_0001998
283 Ga0501080_0025981
284 Ga0501083_0000624
285 nmdc:mga08x19_3795_c1
286 Ga0500556_0001338
287 Ga0500556_0004549
288 Ga0500568_0013336
289 Ga0500616_0000039
290 Ga0501082_0000001
291 Ga0501082_0001288
292 2740992229

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF21018

BipA_C

TypA/BipA C-terminal domain

531

640

0.98

PF00679

EFG_C

Elongation factor G C-terminus

443

530

0.96

PF03144

GTP_EFTU_D2

Elongation factor Tu domain 2

268

338

0.93

PF22042

EF-G_D2

Elongation factor G domain 2

258

340

0.93

PF00009

GTP_EFTU

Elongation factor Tu GTP binding domain

55

243

0.91

PF01926

MMR_HSR1

50S ribosome-binding GTPase

59

176

0.77

Structural Annotation

Top 5 Hits

ID Description Score Start End
3e3x-assembly1.cif.gz_A-2 the c-terminal part of bipa protein from vibrio parahaemolyticus rimd 2210633 0.941 297 598
3e3x-assembly1.cif.gz_A-2 the c-terminal part of bipa protein from vibrio parahaemolyticus rimd 2210633 0.9283 297 598
4zck-assembly1.cif.gz_A crystal structure of c-terminal fragment of escherichia coli bipa/typa 0.8567 298 601
4zck-assembly1.cif.gz_A crystal structure of c-terminal fragment of escherichia coli bipa/typa 0.8515 298 601
6o9k-assembly1.cif.gz_z 70s initiation complex 0.8275 3 282
ID Description Score Start End Superfamily
af_P0DTT0_303_388_3.30.70.870 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Elongation Factor G (Translational Gtpase), domain 3 0.9685 296 388 3.30.70.870
af_Q75JG3_110_302_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9683 3 189 3.40.50.300
af_Q2G1Y6_202_302_2.40.30.10 Mainly Beta;Beta Barrel;Elongation Factor Tu (Ef-tu); domain 3;Translation factors 0.9632 195 291 2.40.30.10
af_G3K3T1_274_374_2.40.30.10 Mainly Beta;Beta Barrel;Elongation Factor Tu (Ef-tu); domain 3;Translation factors 0.9612 195 291 2.40.30.10
af_A4I155_22_213_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9603 3 189 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A812IU49-F1-model_v4 BipA protein 1.002 86 158 GO:0003924
GO:0005525
GO:0005829
GO:1990904
AF-A0A0B4EE04-F1-model_v4 GTP-binding protein TypA 0.9802 53 197 GO:0003924
GO:0005525
GO:0005829
GO:1990904
AF-X1IHK4-F1-model_v4 Elongation factor EFG domain-containing protein 0.9768 397 474 GO:0005525
GO:0032790
AF-A0A351Q5Q9-F1-model_v4 Translational GTPase TypA 0.9713 3 299 GO:0003924
GO:0005525
GO:0005829
GO:0097216
GO:1990904
AF-A0A227J114-F1-model_v4 Elongation factor EFG domain-containing protein 0.9712 397 474 GO:0003746
GO:0005525
GO:0017111
GO:0032790

Map