F195350

General Info

Members Datasets Scaffolds Average Seq Length
145 92 290 285

Family's Representative Sequence

Representative Sequence 3300039437|Ga0436365_1204109|Ga0436365_1204109_1993_2910
Length 305
Sequence MNQLELANRFDRERRRLRAVAYRILGSLSEADDAVQEAWLRLQRTEADEIDNLAGWLTTVVARICLNILRDHRSHAEEPLDAFTPEPLISTRAGDDPEQEALLADAVGIALQVVLDALNPAERIAFVLHDMFAIPFEEIAALLERSPEATRQLASRARRRVRGAAPPPEPDLARQRAVVDAYFAAARDGDLEALVAVLDPDVLVRAHSRTGILELRGAEKVARAAMTARRFAPFVRPALVNGAAGAVAFDGDTPFAILAFTVVGGARAQHRHLQRSRAGAATGALARLLAGGGCVNPTSGGETLT

Samples

Sample ID Description Type Environment
1 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
2 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
6 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
7 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
8 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
9 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
10 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
11 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
12 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
13 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
14 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
15 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
16 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
17 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
18 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
19 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
20 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
21 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
22 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
23 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
24 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
25 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
26 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
27 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
28 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
29 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
30 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
31 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
32 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
33 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
46 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
47 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
48 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
49 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
50 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
51 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
52 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
53 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
54 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
55 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
56 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
57 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
58 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
59 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
60 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
61 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
62 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
63 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
64 3300042011 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0220FE14Z062817_5204 Metagenome Rhizosphere
65 3300042013 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z071817_5339 Metagenome Rhizosphere
66 3300042437 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z081617_5554 Metagenome Rhizosphere
67 3300042993 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z071817_5372 Metagenome Rhizosphere
68 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
69 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
70 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
71 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
72 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
73 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
74 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
75 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
76 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
77 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
78 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
79 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
80 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
81 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
82 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
83 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
84 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
85 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
86 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
87 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
88 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
89 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
90 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
91 2675903059 Asanoa hainanensis CGMCC 4.5593 Isolate Rhizosphere
92 2868088558 Phytoactinopolyspora endophytica EGI 60009 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 97.24
Metatranscriptomes 1.38
Isolates 1.38

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 15.17
Rhizosphere 68.28
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0436365_1204109 3300039437 Bacteria 3488
2 JGI25407J50210_10010363 3300003373 Bacteria 2371
3 JGI25407J50210_10032684 3300003373 Bacteria 1345
4 Ga0070658_10031044 3300005327 Bacteria 4290
5 Ga0070683_100103626 3300005329 Bacteria 2681
6 Ga0070682_100359591 3300005337 Bacteria 1088
7 Ga0070714_100002606 3300005435 Bacteria 13292
8 Ga0070714_100063137 3300005435 Bacteria 3184
9 Ga0070714_100261514 3300005435 Bacteria 1603
10 Ga0070713_100102931 3300005436 Bacteria 2477
11 Ga0070684_100116266 3300005535 Bacteria 2402
12 Ga0070695_100295820 3300005545 Bacteria 1195
13 Ga0068855_100422188 3300005563 Bacteria 1458
14 Ga0070664_100058775 3300005564 Bacteria 3271
15 Ga0068856_100194001 3300005614 Bacteria 2045
16 Ga0068856_100419759 3300005614 Bacteria 1358
17 Ga0068863_100068056 3300005841 Bacteria 3368
18 Ga0081455_10071605 3300005937 Bacteria 2873
19 Ga0081538_10001991 3300005981 Bacteria 20410
20 Ga0081538_10003170 3300005981 Bacteria 15642
21 Ga0081538_10047559 3300005981 Bacteria 2629
22 Ga0081538_10053810 3300005981 Bacteria 2389
23 Ga0081538_10062647 3300005981 Bacteria 2119
24 Ga0081540_1083917 3300005983 Bacteria 1423
25 Ga0070717_10021246 3300006028 Bacteria 5114
26 Ga0070712_100315657 3300006175 Bacteria 1269
27 Ga0105240_10364307 3300009093 Bacteria 1636
28 Ga0105245_10804176 3300009098 Bacteria 978
29 Ga0105248_10032891 3300009177 Bacteria 5794
30 Ga0105239_10941587 3300010375 Bacteria 992
31 Ga0157370_10360471 3300013104 Bacteria 1340
32 Ga0157369_10410347 3300013105 Bacteria 1405
33 Ga0163163_10005562 3300014325 Bacteria 10913
34 Ga0157379_10198118 3300014968 Bacteria 1816
35 Ga0206354_11541184 3300020081 Bacteria 1222
36 Ga0206353_10139008 3300020082 Bacteria 3987
37 Ga0213873_10014011 3300021358 Bacteria 1770
38 Ga0213873_10016162 3300021358 Bacteria 1683
39 Ga0213874_10028442 3300021377 Bacteria 1597
40 Ga0213876_10003585 3300021384 Bacteria 8830
41 Ga0213876_10007053 3300021384 Bacteria 6126
42 Ga0213876_10091273 3300021384 Bacteria 1613
43 Ga0213876_10178011 3300021384 Bacteria 1131
44 Ga0213875_10000454 3300021388 Bacteria 35453
45 Ga0213875_10020642 3300021388 Bacteria 3160
46 Ga0213875_10055542 3300021388 Bacteria 1854
47 Ga0207693_10247381 3300025915 Bacteria 1399
48 Ga0207693_10281377 3300025915 Bacteria 1303
49 Ga0207663_10242664 3300025916 Bacteria 1322
50 Ga0207660_10194990 3300025917 Bacteria 1579
51 Ga0207652_10010958 3300025921 Bacteria 7310
52 Ga0207646_10049307 3300025922 Bacteria 3772
53 Ga0207700_10402226 3300025928 Bacteria 1200
54 Ga0207664_10000169 3300025929 Bacteria 51678
55 Ga0207664_10011829 3300025929 Bacteria 6223
56 Ga0207661_10005935 3300025944 Bacteria 8623
57 Ga0207661_10044229 3300025944 Bacteria 3519
58 Ga0207661_10046772 3300025944 Bacteria 3432
59 Ga0207661_10297653 3300025944 Bacteria 1446
60 Ga0207679_10420237 3300025945 Bacteria 1180
61 Ga0207702_10160317 3300026078 Bacteria 2054
62 Ga0207676_10028459 3300026095 Bacteria 4174
63 Ga0207674_10022821 3300026116 Bacteria 6714
64 Ga0307513_10011105 3300031456 Bacteria 11228
65 Ga0307408_100161156 3300031548 Bacteria 1782
66 Ga0307405_10277226 3300031731 Bacteria 1260
67 Ga0307410_10244016 3300031852 Bacteria 1393
68 Ga0307407_10078527 3300031903 Bacteria 1989
69 Ga0307407_10172803 3300031903 Bacteria 1425
70 Ga0307412_10180694 3300031911 Bacteria 1587
71 Ga0307412_10244577 3300031911 Bacteria 1390
72 Ga0307409_100052991 3300031995 Bacteria 3115
73 Ga0307409_100162817 3300031995 Bacteria 1953
74 Ga0307409_100741140 3300031995 Bacteria 985
75 Ga0307411_10011183 3300032005 Bacteria 4829
76 Ga0373943_0188298 3300035170 Bacteria 1137
77 Ga0373937_0573792 3300036401 Bacteria 1071
78 Ga0395899_0003362 3300037312 Bacteria 12693
79 Ga0395900_0002558 3300037418 Bacteria 19945
80 Ga0395898_0043181 3300037466 Bacteria 4443
81 Ga0395905_0002554 3300037471 Bacteria 20070
82 Ga0436364_0183590 3300037853 Bacteria 35367
83 Ga0436364_0406661 3300037853 Bacteria 3316
84 Ga0436364_1173252 3300037853 Bacteria 31575
85 Ga0436364_1462823 3300037853 Bacteria 3647
86 Ga0395901_0002375 3300038443 Bacteria 19144
87 Ga0436365_0005198 3300039437 Bacteria 2291
88 Ga0436365_0101629 3300039437 Bacteria 12636
89 Ga0436365_0806105 3300039437 Bacteria 1864
90 Ga0436365_0811350 3300039437 Bacteria 3513
91 Ga0436365_1040222 3300039437 Bacteria 17140
92 Ga0436365_1378694 3300039437 Bacteria 21822
93 Ga0436365_1422677 3300039437 Bacteria 2102
94 Ga0436365_1660117 3300039437 Bacteria 4555
95 Ga0436362_0340496 3300039453 Bacteria 1093
96 Ga0436362_0517586 3300039453 Bacteria 2288
97 Ga0436362_0813236 3300039453 Bacteria 2138
98 Ga0439461_0003690 3300041410 Bacteria 2528
99 Ga0451853_2005217 3300041512 Bacteria 3174
100 Ga0439454_001427 3300042011 Bacteria 2298
101 Ga0439456_013035 3300042013 Bacteria 1728
102 Ga0439444_0015327 3300042437 Bacteria 1293
103 Ga0439440_0002905 3300042993 Bacteria 3262
104 Ga0466963_0009592 3300044694 Bacteria 5833
105 Ga0466963_0096117 3300044694 Bacteria 2023
106 Ga0466970_0060122 3300044765 Bacteria 2035
107 Ga0466957_0006107 3300044842 Bacteria 6798
108 Ga0466958_0001491 3300045836 Bacteria 11179
109 Ga0466958_0112657 3300045836 Bacteria 1699
110 Ga0466967_0007628 3300045976 Bacteria 7829
111 Ga0466967_0011008 3300045976 Bacteria 6824
112 Ga0466967_0037553 3300045976 Bacteria 4146
113 Ga0466967_0038945 3300045976 Bacteria 4081
114 Ga0466967_0360894 3300045976 Bacteria 1408
115 Ga0495603_0101247 3300046455 Bacteria 1682
116 Ga0495629_0052458 3300046459 Bacteria 2854
117 Ga0495641_0026768 3300046461 Bacteria 2811
118 Ga0495594_0016081 3300046499 Bacteria 3936
119 Ga0495581_0185114 3300047315 Bacteria 1218
120 Ga0495604_0295623 3300047317 Bacteria 1089
121 Ga0496100_0194990 3300048903 Bacteria 1473
122 Ga0496104_0007183 3300048907 Bacteria 9820
123 Ga0496104_0039557 3300048907 Bacteria 4415
124 Ga0496105_0031963 3300048908 Bacteria 4316
125 Ga0496107_0132923 3300048910 Bacteria 1838
126 Ga0496108_0015067 3300048911 Bacteria 6311
127 Ga0496108_0032112 3300048911 Bacteria 4359
128 Ga0496109_0005873 3300048912 Bacteria 10295
129 Ga0496109_0040434 3300048912 Bacteria 4224
130 Ga0496109_0048967 3300048912 Bacteria 3846
131 Ga0496110_0015916 3300048913 Bacteria 6272
132 Ga0496110_0019506 3300048913 Bacteria 5708
133 Ga0496110_0154110 3300048913 Bacteria 2081
134 Ga0496111_0023394 3300048914 Bacteria 4337
135 Ga0496111_0026228 3300048914 Bacteria 4114
136 Ga0496111_0045337 3300048914 Bacteria 3163
137 Ga0496112_0027133 3300048915 Bacteria 5520
138 Ga0496112_0034044 3300048915 Bacteria 4957
139 Ga0496112_0123238 3300048915 Bacteria 2563
140 Ga0496114_0047904 3300048917 Bacteria 3555
141 Ga0496115_0016727 3300048918 Bacteria 5589
142 Ga0496115_0179607 3300048918 Bacteria 1750
143 Ga0501046_0226745 3300049580 Bacteria 1382
144 2676481566 2675903059 Bacteria 8644972
145 2868095080 2868088558 Bacteria 7609351
146 Ga0436365_1204109
147 JGI25407J50210_10010363
148 JGI25407J50210_10032684
149 Ga0070658_10031044
150 Ga0070683_100103626
151 Ga0070682_100359591
152 Ga0070714_100002606
153 Ga0070714_100063137
154 Ga0070714_100261514
155 Ga0070713_100102931
156 Ga0070684_100116266
157 Ga0070695_100295820
158 Ga0068855_100422188
159 Ga0070664_100058775
160 Ga0068856_100194001
161 Ga0068856_100419759
162 Ga0068863_100068056
163 Ga0081455_10071605
164 Ga0081538_10001991
165 Ga0081538_10003170
166 Ga0081538_10047559
167 Ga0081538_10053810
168 Ga0081538_10062647
169 Ga0081540_1083917
170 Ga0070717_10021246
171 Ga0070712_100315657
172 Ga0105240_10364307
173 Ga0105245_10804176
174 Ga0105248_10032891
175 Ga0105239_10941587
176 Ga0157370_10360471
177 Ga0157369_10410347
178 Ga0163163_10005562
179 Ga0157379_10198118
180 Ga0206354_11541184
181 Ga0206353_10139008
182 Ga0213873_10014011
183 Ga0213873_10016162
184 Ga0213874_10028442
185 Ga0213876_10003585
186 Ga0213876_10007053
187 Ga0213876_10091273
188 Ga0213876_10178011
189 Ga0213875_10000454
190 Ga0213875_10020642
191 Ga0213875_10055542
192 Ga0207693_10247381
193 Ga0207693_10281377
194 Ga0207663_10242664
195 Ga0207660_10194990
196 Ga0207652_10010958
197 Ga0207646_10049307
198 Ga0207700_10402226
199 Ga0207664_10000169
200 Ga0207664_10011829
201 Ga0207661_10005935
202 Ga0207661_10044229
203 Ga0207661_10046772
204 Ga0207661_10297653
205 Ga0207679_10420237
206 Ga0207702_10160317
207 Ga0207676_10028459
208 Ga0207674_10022821
209 Ga0307513_10011105
210 Ga0307408_100161156
211 Ga0307405_10277226
212 Ga0307410_10244016
213 Ga0307407_10078527
214 Ga0307407_10172803
215 Ga0307412_10180694
216 Ga0307412_10244577
217 Ga0307409_100052991
218 Ga0307409_100162817
219 Ga0307409_100741140
220 Ga0307411_10011183
221 Ga0373943_0188298
222 Ga0373937_0573792
223 Ga0395899_0003362
224 Ga0395900_0002558
225 Ga0395898_0043181
226 Ga0395905_0002554
227 Ga0436364_0183590
228 Ga0436364_0406661
229 Ga0436364_1173252
230 Ga0436364_1462823
231 Ga0395901_0002375
232 Ga0436365_0005198
233 Ga0436365_0101629
234 Ga0436365_0806105
235 Ga0436365_0811350
236 Ga0436365_1040222
237 Ga0436365_1378694
238 Ga0436365_1422677
239 Ga0436365_1660117
240 Ga0436362_0340496
241 Ga0436362_0517586
242 Ga0436362_0813236
243 Ga0439461_0003690
244 Ga0451853_2005217
245 Ga0439454_001427
246 Ga0439456_013035
247 Ga0439444_0015327
248 Ga0439440_0002905
249 Ga0466963_0009592
250 Ga0466963_0096117
251 Ga0466970_0060122
252 Ga0466957_0006107
253 Ga0466958_0001491
254 Ga0466958_0112657
255 Ga0466967_0007628
256 Ga0466967_0011008
257 Ga0466967_0037553
258 Ga0466967_0038945
259 Ga0466967_0360894
260 Ga0495603_0101247
261 Ga0495629_0052458
262 Ga0495641_0026768
263 Ga0495594_0016081
264 Ga0495581_0185114
265 Ga0495604_0295623
266 Ga0496100_0194990
267 Ga0496104_0007183
268 Ga0496104_0039557
269 Ga0496105_0031963
270 Ga0496107_0132923
271 Ga0496108_0015067
272 Ga0496108_0032112
273 Ga0496109_0005873
274 Ga0496109_0040434
275 Ga0496109_0048967
276 Ga0496110_0015916
277 Ga0496110_0019506
278 Ga0496110_0154110
279 Ga0496111_0023394
280 Ga0496111_0026228
281 Ga0496111_0045337
282 Ga0496112_0027133
283 Ga0496112_0034044
284 Ga0496112_0123238
285 Ga0496114_0047904
286 Ga0496115_0016727
287 Ga0496115_0179607
288 Ga0501046_0226745
289 2676481566
290 2868095080

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF08281

Sigma70_r4_2

Sigma-70, region 4

109

161

0.96

PF04542

Sigma70_r2

Sigma-70 region 2

9

75

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
5fgm-assembly1.cif.gz_A streptomyces coelicolor sigr region 4 0.891 114 164
3vfz-assembly3.cif.gz_A crystal structure of -35 promoter binding domain of sigd of mycobacterium tuberculosis 0.8834 114 164
2h27-assembly2.cif.gz_D crystal structure of escherichia coli sigmae region 4 bound to its-35 element dna 0.8032 104 164
2o8x-assembly1.cif.gz_B "crystal structure of the ""-35 element"" promoter recognition domain of mycobacterium tuberculosis sigc" 0.7928 104 162
5wur-assembly2.cif.gz_B crystal structure of sigw in complex with its anti-sigma rsiw, an oxdized form 0.783 2 164
ID Description Score Start End Superfamily
af_P9WGH3_4_93_1.10.1740.10 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.9273 8 82 1.10.1740.10
af_L0TCG5_5_78_1.10.1740.10 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.9076 11 79 1.10.1740.10
af_P23484_2_79_1.10.1740.10 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.8953 11 71 1.10.1740.10
3vepH00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8896 114 164 1.10.10.10
3vfzA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8834 114 164 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A7K2NX36-F1-model_v4 RNA polymerase subunit sigma-70 0.9333 184 293 GO:0016987
AF-A0A7X0GMB5-F1-model_v4 Uncharacterized protein 0.9302 197 285 GO:0016987
AF-A0A7H0ITH2-F1-model_v4 Sigma-70 family RNA polymerase sigma factor 0.9139 3 288 GO:0003677
GO:0006352
GO:0016987
AF-A0A7M4DEM4-F1-model_v4 ECF RNA polymerase sigma factor SigJ 0.9133 1 287 GO:0003677
GO:0006352
GO:0016987
AF-A0A6B2UX92-F1-model_v4 RNA polymerase subunit sigma-70 0.911 182 290 GO:0016987

Map