F192211

General Info

Members Datasets Scaffolds Average Seq Length
144 106 102 229

Family's Representative Sequence

Representative Sequence 3300031911|Ga0307412_10005589|Ga0307412_100055894
Length 243
Sequence MNKSFGDKVIEFNQNLKYDGNLPDDFEVLNPYLDNPETLEVMQKFYHKYYNDSNRRKFIIGINPSRHGAGVTGVPFTDTKRLESVCGIKMESARTHEISSVFMYDMITEYGGAEGFYSDIYINSPFPLAIVRKSKKGWLNANYYDDKRLFEEVKDFMIDSLKKHINLNLDTSEVFILGKKNADFISKLNKEAKLFDKMTVLEHPRYIQQYKLKMKQLYVDKYILALKNKNPLKESRDFITLKH

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2511231000 Chryseobacterium populi CF314 Isolate Rhizosphere
3 2523533629 Kaistella palustris DSM 21579 Isolate Rhizosphere
4 2582581278 Chryseobacterium sp. CF365 Isolate Rhizosphere
5 2582581281 Chryseobacterium sp. CF284 Isolate Rhizosphere
6 2582581282 Chryseobacterium sp. CF299 Isolate Rhizosphere
7 2585428045 Chryseobacterium sp. OV705 Isolate Rhizosphere
8 2585428060 Chryseobacterium sp. OV715 Isolate Rhizosphere
9 2585428061 Chryseobacterium sp. CF356 Isolate Rhizosphere
10 2585428115 Chryseobacterium sp. YR561 Isolate Rhizosphere
11 2585428182 Chryseobacterium sp. YR477 Isolate Rhizosphere
12 2585428183 Chryseobacterium sp. YR485 Isolate Rhizosphere
13 2585428184 Chryseobacterium sp. YR480 Isolate Rhizosphere
14 2585428185 Chryseobacterium sp. YR459 Isolate Rhizosphere
15 2585428187 Chryseobacterium sp. YR460 Isolate Rhizosphere
16 2588253712 Chryseobacterium sp. OV279 Isolate Rhizosphere
17 2588254255 Chryseobacterium sp. YR221 Isolate Rhizosphere
18 2588254257 Chryseobacterium sp. YR203 Isolate Rhizosphere
19 2643221600 Flavobacterium sp. Root186 Isolate Unclassified
20 2721755487 Sphingobacterium sp. B29 Isolate Rhizosphere
21 2728369107 Chryseobacterium kwangjuense KJ1R5 Isolate Unclassified
22 2738541273 Elizabethkingia sp. YR214 Isolate Unclassified
23 2738543014 Elizabethkingia sp. YR191 Isolate Unclassified
24 2739367874 Chryseobacterium sp. T16E-39 Isolate Unclassified
25 2751185877 Chryseobacterium artocarpi UTM-3 Isolate Rhizosphere
26 2765235839 Chryseobacterium indologenes AA5 Isolate Unclassified
27 2772190705 Chryseobacterium contaminans C-26 Isolate Rhizosphere
28 2775506739 Chryseobacterium sp. 1335 Isolate Unclassified
29 2816332188 Chryseobacterium aquifrigidense 110 (version 2) Isolate Unclassified
30 2842083920 Chryseobacterium lathyri KCTC 22544 Isolate Rhizosphere
31 2871720351 Chryseobacterium sp. KLBC 52 Isolate Nodule
32 2889290771 Chryseobacterium sp. PvR013 Isolate Rhizosphere
33 2898713307 Sphingobacterium sp. SGG-5 Isolate Rhizosphere
34 2904780799 Sphingobacterium sp. 1304 Isolate Rhizosphere
35 2905999023 Chryseobacterium elymi KCTC 22547 Isolate Rhizosphere
36 2919097161 Chryseobacterium ginsenosidimutans 1394 Isolate Rhizosphere
37 2919177583 Sphingobacterium sp. 2149 Isolate Rhizosphere
38 2919399522 Chryseobacterium sp. 2987 Isolate Unclassified
39 2946019816 Chryseobacterium sp. W4I1 Isolate Rhizosphere
40 2977243572 Chryseobacterium sp. SORGH_AS 447 Isolate Unclassified
41 2984606641 Chryseobacterium sp. SORGH_AS1175 Isolate Aerial Root
42 2993372514 Chryseobacterium sp. SLBN-27 Isolate Rhizosphere
43 2993480792 Chryseobacterium nepalense SLBN-92 Isolate Rhizosphere
44 3300001915 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7 Metagenome Rhizosphere
45 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
46 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
47 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
48 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
49 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
50 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
51 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
52 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
53 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
54 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
55 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
56 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
57 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
58 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
59 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
60 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
61 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
62 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
63 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
69 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
70 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
71 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
72 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
73 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
74 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
75 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
76 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
77 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
78 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
79 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
80 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
81 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
82 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
83 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
84 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
85 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
86 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
87 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
88 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
89 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
90 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
91 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
92 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
93 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
94 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
95 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
96 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
97 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
98 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
99 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
100 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
101 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
102 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
103 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
104 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
105 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
106 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 70.83
Metatranscriptomes 0
Isolates 29.17

Biome Distribution

Category Percentage (%)
Aerial Root 0.69
Bulb 0
Endosphere 1.39
Nodule 0.69
Rhizoplane 2.78
Rhizosphere 71.53
Stem 0
Stem Tuber 0
Unclassified 22.92

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_2270302 2162886007 Bacteria 2353
2 SwRhRL2b_contig_2499519 2162886007 Bacteria 1576
3 JGI24741J21665_1001773 3300001915 Bacteria 5933
4 rootH1_10186889 3300003316 Bacteria 2160
5 Ga0055534_1025283 3300003784 Bacteria 955
6 Ga0065714_10002396 3300005288 Bacteria 27566
7 Ga0065714_10066161 3300005288 Bacteria 7464
8 Ga0065704_10071215 3300005289 Bacteria 12428
9 Ga0065704_10071541 3300005289 Bacteria 10764
10 Ga0065704_10076367 3300005289 Bacteria 5146
11 Ga0065704_10080258 3300005289 Bacteria 3970
12 Ga0070682_100000064 3300005337 Bacteria 100988
13 Ga0070684_100032322 3300005535 Bacteria 4459
14 Ga0105247_10025987 3300009101 Bacteria 3534
15 Ga0105243_10000003 3300009148 Bacteria 712931
16 Ga0105243_10000160 3300009148 Bacteria 76215
17 Ga0105249_10117299 3300009553 Bacteria 2524
18 Ga0157373_10008995 3300013100 Bacteria 7389
19 Ga0157371_10047038 3300013102 Bacteria 3066
20 Ga0157371_10056796 3300013102 Bacteria 2776
21 Ga0157370_10001365 3300013104 Bacteria 30203
22 Ga0157370_10102927 3300013104 Bacteria 2673
23 Ga0157370_10103692 3300013104 Bacteria 2662
24 Ga0157372_10000683 3300013307 Bacteria 37283
25 Ga0157375_10000598 3300013308 Bacteria 32026
26 Ga0182008_10000062 3300014497 Bacteria 90671
27 Ga0182006_1000001 3300015261 Bacteria 1091090
28 Ga0163161_10001207 3300017792 Bacteria 19457
29 Ga0163161_10265109 3300017792 Bacteria 1343
30 Ga0209675_1000146 3300025291 Bacteria 93829
31 Ga0207655_1000164 3300025728 Bacteria 121490
32 Ga0207710_10029858 3300025900 Bacteria 2375
33 Ga0207709_10000008 3300025935 Bacteria 713099
34 Ga0207709_10000212 3300025935 Bacteria 75306
35 Ga0207661_10000949 3300025944 Bacteria 19104
36 Ga0207668_10059516 3300025972 Bacteria 2677
37 Ga0207668_10148821 3300025972 Bacteria 1810
38 Ga0307408_100000069 3300031548 Bacteria 120480
39 Ga0307412_10000036 3300031911 Bacteria 192270
40 Ga0307412_10001511 3300031911 Bacteria 12915
41 Ga0307412_10005589 3300031911 Bacteria 7056
42 Ga0307416_100000044 3300032002 Bacteria 127948
43 Ga0307414_10000043 3300032004 Bacteria 137764
44 Ga0307414_10002596 3300032004 Bacteria 9503
45 Ga0307414_10043137 3300032004 Bacteria 3070
46 Ga0307414_10052405 3300032004 Bacteria 2839
47 Ga0307414_10062053 3300032004 Bacteria 2650
48 Ga0307414_10654521 3300032004 Bacteria 947
49 Ga0307411_10000001 3300032005 Bacteria 931810
50 Ga0451807_1574396 3300041486 Bacteria 1139
51 Ga0451843_1128642 3300041509 Bacteria 1127
52 Ga0439445_0004436 3300042004 Bacteria 3178
53 Ga0495627_000081 3300046453 Bacteria 116262
54 Ga0495627_005385 3300046453 Bacteria 5165
55 Ga0495638_0076159 3300046460 Bacteria 2044
56 Ga0495638_0086063 3300046460 Bacteria 1900
57 Ga0495596_0009119 3300046500 Bacteria 4380
58 Ga0495606_0002427 3300046507 Bacteria 21719
59 Ga0495606_0101887 3300046507 Bacteria 1746
60 Ga0495610_0000005 3300046512 Bacteria 924111
61 Ga0495632_0023692 3300046519 Bacteria 3274
62 Ga0495643_0240985 3300046522 Bacteria 848
63 Ga0495663_0000043 3300046525 Bacteria 63128
64 Ga0495633_0000114 3300046558 Bacteria 108708
65 Ga0495633_0000890 3300046558 Bacteria 25575
66 Ga0495625_0000120 3300046660 Bacteria 121527
67 Ga0495686_0000133 3300047472 Bacteria 151597
68 Ga0496102_0038557 3300048905 Bacteria 4313
69 Ga0496114_0426847 3300048917 Unclassified 1174
70 Ga0496115_0137026 3300048918 Bacteria 2018
71 Ga0496116_0000191 3300048919 Bacteria 122348
72 Ga0496116_0023492 3300048919 Bacteria 4589
73 Ga0496117_0000188 3300048920 Bacteria 126828
74 Ga0496117_0078857 3300048920 Bacteria 2172
75 Ga0496118_0001654 3300048921 Bacteria 32740
76 Ga0496118_0142655 3300048921 Bacteria 1515
77 Ga0496119_0000098 3300048922 Bacteria 126786
78 Ga0496120_0058962 3300048923 Bacteria 2153
79 Ga0496122_0000307 3300048925 Bacteria 108043
80 Ga0496122_0000378 3300048925 Bacteria 95352
81 Ga0496122_0000774 3300048925 Bacteria 61588
82 Ga0496122_0001648 3300048925 Bacteria 34655
83 Ga0496122_0007259 3300048925 Bacteria 12395
84 Ga0496122_0022766 3300048925 Bacteria 5557
85 Ga0496123_0003199 3300048926 Bacteria 18677
86 Ga0496123_0011916 3300048926 Bacteria 7469
87 Ga0496124_0001097 3300048927 Bacteria 42578
88 Ga0496125_0001255 3300048928 Bacteria 37828
89 Ga0496125_0018903 3300048928 Bacteria 6523
90 Ga0496125_0102586 3300048928 Bacteria 2101
91 Ga0496126_0001794 3300048929 Bacteria 31570
92 Ga0501034_0064961 3300049571 Bacteria 3662
93 Ga0501034_0279216 3300049571 Bacteria 1610
94 Ga0501043_0049764 3300049579 Unclassified 3295
95 Ga0501080_0210708 3300049742 Unclassified 1781
96 Ga0501241_000025 3300049758 Bacteria 60000
97 Ga0501269_000013 3300049766 Bacteria 60610
98 Ga0501035_0494998 3300049822 Bacteria 1007
99 Ga0501044_0028957 3300049823 Bacteria 5842
100 Ga0501044_0068369 3300049823 Bacteria 3619
101 Ga0501044_0073733 3300049823 Bacteria 3469
102 Ga0501044_0135885 3300049823 Bacteria 2450

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049822 Ga0501035_0494998 Ga0501035_0494998_49_654 201
2 3300048917 Ga0496114_0426847 Ga0496114_0426847_531_1145 202
3 3300046525 Ga0495663_0000043 Ga0495663_0000043_18043_18669 207
4 iso_pu_bacteria 2993480792 2993481807 222
5 iso_pu_bacteria 2585428060 2587748779 223
6 iso_pu_bacteria 2588253712 2588447716 223
7 iso_pu_bacteria 2511231000 2511234948 224
8 iso_pu_bacteria 2582581278 2585144246 224
9 iso_pu_bacteria 2582581281 2585157962 224
10 iso_pu_bacteria 2582581282 2585162262 224
11 iso_pu_bacteria 2585428045 2587680520 224
12 iso_pu_bacteria 2585428182 2588212154 224
13 iso_pu_bacteria 2585428187 2588234756 224
14 iso_pu_bacteria 2588254255 2590604562 224
15 iso_pu_bacteria 2738541273 2738701434 224
16 iso_pu_bacteria 2738543014 2739255732 224
17 iso_pu_bacteria 2765235839 2765575850 224
18 iso_pu_bacteria 2775506739 2775674196 224
19 iso_pu_bacteria 2816332188 2816876374 224
20 iso_pu_bacteria 2842083920 2842086399 224
21 iso_pu_bacteria 2871720351 2871721901 224
22 iso_pu_bacteria 2889290771 2889293660 224
23 iso_pu_bacteria 2919097161 2919100510 224
24 iso_pu_bacteria 2919399522 2919403623 224
25 iso_pu_bacteria 2993372514 2993374955 224
26 iso_pu_bacteria 2523533629 2524006260 225
27 iso_pu_bacteria 2585428183 2588216969 225
28 iso_pu_bacteria 2585428184 2588217199 225
29 iso_pu_bacteria 2585428185 2588222052 225
30 iso_pu_bacteria 2588254257 2590610357 225
31 iso_pu_bacteria 2643221600 2644011096 225
32 iso_pu_bacteria 2721755487 2722730610 225
33 iso_pu_bacteria 2751185877 2753671446 225
34 iso_pu_bacteria 2772190705 2772604325 225
35 iso_pu_bacteria 2898713307 2898715655 225
36 iso_pu_bacteria 2904780799 2904785122 225
37 iso_pu_bacteria 2905999023 2906001040 225
38 iso_pu_bacteria 2919177583 2919181692 225
39 iso_pu_bacteria 2946019816 2946024225 225
40 iso_pu_bacteria 2984606641 2984608045 225
41 iso_pu_bacteria 2585428061 2587753412 226
42 iso_pu_bacteria 2585428115 2587945455 226
43 iso_pu_bacteria 2739367874 2740060581 226
44 2162886007 SwRhRL2b_contig_2499519 SwRhRL2b_0932.00000660 227
45 3300003784 Ga0055534_1025283 Ga0055534_10252832 227
46 3300005288 Ga0065714_10002396 Ga0065714_100023966 227
47 3300005289 Ga0065704_10071541 Ga0065704_1007154113 227
48 3300005289 Ga0065704_10076367 Ga0065704_100763672 227
49 3300009101 Ga0105247_10025987 Ga0105247_100259872 227
50 3300009148 Ga0105243_10000160 Ga0105243_100001605 227
51 3300009553 Ga0105249_10117299 Ga0105249_101172992 227
52 3300013104 Ga0157370_10001365 Ga0157370_1000136521 227
53 3300013308 Ga0157375_10000598 Ga0157375_100005983 227
54 3300015261 Ga0182006_1000001 Ga0182006_1000001995 227
55 3300025291 Ga0209675_1000146 Ga0209675_100014649 227
56 3300025728 Ga0207655_1000164 Ga0207655_100016472 227
57 3300025900 Ga0207710_10029858 Ga0207710_100298582 227
58 3300025935 Ga0207709_10000212 Ga0207709_100002124 227
59 3300025972 Ga0207668_10059516 Ga0207668_100595162 227
60 3300025972 Ga0207668_10148821 Ga0207668_101488212 227
61 3300031911 Ga0307412_10001511 Ga0307412_1000151117 227
62 3300032004 Ga0307414_10654521 Ga0307414_106545212 227
63 3300042004 Ga0439445_0004436 Ga0439445_0004436_1219_1905 227
64 3300046453 Ga0495627_005385 Ga0495627_005385_1353_2048 227
65 3300046460 Ga0495638_0086063 Ga0495638_0086063_1137_1823 227
66 3300046500 Ga0495596_0009119 Ga0495596_0009119_448_1134 227
67 3300046512 Ga0495610_0000005 Ga0495610_0000005_46013_46699 227
68 3300046519 Ga0495632_0023692 Ga0495632_0023692_933_1619 227
69 3300046558 Ga0495633_0000890 Ga0495633_0000890_4781_5467 227
70 3300046660 Ga0495625_0000120 Ga0495625_0000120_62346_63032 227
71 3300047472 Ga0495686_0000133 Ga0495686_0000133_141496_142182 227
72 3300048921 Ga0496118_0142655 Ga0496118_0142655_510_1196 227
73 3300048925 Ga0496122_0000307 Ga0496122_0000307_34837_35523 227
74 3300048925 Ga0496122_0022766 Ga0496122_0022766_3929_4615 227
75 3300048926 Ga0496123_0011916 Ga0496123_0011916_2024_2710 227
76 3300048928 Ga0496125_0001255 Ga0496125_0001255_22255_22941 227
77 3300048928 Ga0496125_0102586 Ga0496125_0102586_1306_1992 227
78 3300049758 Ga0501241_000025 Ga0501241_000025_26245_26931 227
79 3300049766 Ga0501269_000013 Ga0501269_000013_30353_31039 227
80 iso_pu_bacteria 2728369107 2729200613 227
81 iso_pu_bacteria 2977243572 2977247610 227
82 3300001915 JGI24741J21665_1001773 JGI24741J21665_10017735 228
83 3300003316 rootH1_10186889 rootH1_101868893 228
84 3300005288 Ga0065714_10066161 Ga0065714_100661612 228
85 3300005337 Ga0070682_100000064 Ga0070682_10000006454 228
86 3300005535 Ga0070684_100032322 Ga0070684_1000323222 228
87 3300013100 Ga0157373_10008995 Ga0157373_100089953 228
88 3300013102 Ga0157371_10056796 Ga0157371_100567962 228
89 3300013104 Ga0157370_10102927 Ga0157370_101029273 228
90 3300013104 Ga0157370_10103692 Ga0157370_101036923 228
91 3300014497 Ga0182008_10000062 Ga0182008_1000006242 228
92 3300017792 Ga0163161_10001207 Ga0163161_1000120717 228
93 3300017792 Ga0163161_10265109 Ga0163161_102651092 228
94 3300025944 Ga0207661_10000949 Ga0207661_100009495 228
95 3300031548 Ga0307408_100000069 Ga0307408_10000006929 228
96 3300031911 Ga0307412_10000036 Ga0307412_1000003651 228
97 3300031911 Ga0307412_10005589 Ga0307412_100055894 228
98 3300032002 Ga0307416_100000044 Ga0307416_10000004452 228
99 3300032004 Ga0307414_10000043 Ga0307414_1000004391 228
100 3300032004 Ga0307414_10002596 Ga0307414_100025963 228
101 3300032004 Ga0307414_10052405 Ga0307414_100524052 228
102 3300032004 Ga0307414_10062053 Ga0307414_100620534 228
103 3300032005 Ga0307411_10000001 Ga0307411_10000001151 228
104 3300041486 Ga0451807_1574396 Ga0451807_1574396_88_777 228
105 3300041509 Ga0451843_1128642 Ga0451843_1128642_113_805 228
106 3300046453 Ga0495627_000081 Ga0495627_000081_76198_76890 228
107 3300046460 Ga0495638_0076159 Ga0495638_0076159_67_768 228
108 3300046507 Ga0495606_0002427 Ga0495606_0002427_9593_10294 228
109 3300046507 Ga0495606_0101887 Ga0495606_0101887_290_994 228
110 3300046522 Ga0495643_0240985 Ga0495643_0240985_116_805 228
111 3300046558 Ga0495633_0000114 Ga0495633_0000114_74067_74756 228
112 3300048905 Ga0496102_0038557 Ga0496102_0038557_273_968 228
113 3300048918 Ga0496115_0137026 Ga0496115_0137026_540_1229 228
114 3300048919 Ga0496116_0000191 Ga0496116_0000191_44701_45396 228
115 3300048920 Ga0496117_0000188 Ga0496117_0000188_48789_49484 228
116 3300048921 Ga0496118_0001654 Ga0496118_0001654_22386_23081 228
117 3300048922 Ga0496119_0000098 Ga0496119_0000098_48789_49484 228
118 3300048923 Ga0496120_0058962 Ga0496120_0058962_1324_2019 228
119 3300048925 Ga0496122_0000378 Ga0496122_0000378_17337_18032 228
120 3300048925 Ga0496122_0000774 Ga0496122_0000774_10522_11211 228
121 3300048925 Ga0496122_0001648 Ga0496122_0001648_29151_29849 228
122 3300048926 Ga0496123_0003199 Ga0496123_0003199_17317_18012 228
123 3300048927 Ga0496124_0001097 Ga0496124_0001097_34820_35515 228
124 3300048928 Ga0496125_0018903 Ga0496125_0018903_780_1475 228
125 3300048929 Ga0496126_0001794 Ga0496126_0001794_11037_11732 228
126 3300049571 Ga0501034_0064961 Ga0501034_0064961_1749_2438 228
127 3300049571 Ga0501034_0279216 Ga0501034_0279216_503_1192 228
128 3300049579 Ga0501043_0049764 Ga0501043_0049764_1151_1840 228
129 3300049823 Ga0501044_0073733 Ga0501044_0073733_292_981 228
130 2162886007 SwRhRL2b_contig_2270302 SwRhRL2b_0187.00002560 229
131 3300005289 Ga0065704_10071215 Ga0065704_100712152 229
132 3300005289 Ga0065704_10080258 Ga0065704_100802584 229
133 3300009148 Ga0105243_10000003 Ga0105243_10000003496 229
134 3300013102 Ga0157371_10047038 Ga0157371_100470382 229
135 3300013307 Ga0157372_10000683 Ga0157372_1000068314 229
136 3300025935 Ga0207709_10000008 Ga0207709_1000000877 229
137 3300032004 Ga0307414_10043137 Ga0307414_100431372 229
138 3300048919 Ga0496116_0023492 Ga0496116_0023492_942_1631 229
139 3300048920 Ga0496117_0078857 Ga0496117_0078857_1352_2041 229
140 3300048925 Ga0496122_0007259 Ga0496122_0007259_3597_4286 229
141 3300049742 Ga0501080_0210708 Ga0501080_0210708_290_1000 229
142 3300049823 Ga0501044_0028957 Ga0501044_0028957_337_1047 229
143 3300049823 Ga0501044_0068369 Ga0501044_0068369_360_1058 229
144 3300049823 Ga0501044_0135885 Ga0501044_0135885_292_1002 229

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03167

UDG

Uracil DNA glycosylase superfamily

47

227

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
5h0j-assembly1.cif.gz_A the crystal structure of wt pedobacter heparinus smug2 0.9265 1 228
5h0k-assembly1.cif.gz_A the crystal structure of wt pedobacter heparinus smug2 0.9264 1 228
5h0k-assembly1.cif.gz_A the crystal structure of wt pedobacter heparinus smug2 0.9187 1 228
5h0j-assembly1.cif.gz_A the crystal structure of wt pedobacter heparinus smug2 0.9187 1 228
5h98-assembly1.cif.gz_A crystal structure of geobacter metallireducens smug1 0.6968 4 228
ID Description Score Start End Superfamily
af_Q9VEM1_36_278_3.40.470.10 Alpha Beta;3-Layer(aba) Sandwich;Uracil-DNA Glycosylase, subunit E;Uracil-DNA glycosylase-like domain 0.7079 4 224 3.40.470.10
5h98A00 Alpha Beta;3-Layer(aba) Sandwich;Uracil-DNA Glycosylase, subunit E;Uracil-DNA glycosylase-like domain 0.6968 4 228 3.40.470.10
af_Q9VEM1_36_278_3.40.470.10 Alpha Beta;3-Layer(aba) Sandwich;Uracil-DNA Glycosylase, subunit E;Uracil-DNA glycosylase-like domain 0.6844 4 224 3.40.470.10
5h98A00 Alpha Beta;3-Layer(aba) Sandwich;Uracil-DNA Glycosylase, subunit E;Uracil-DNA glycosylase-like domain 0.6788 4 228 3.40.470.10
1oe5B00 Alpha Beta;3-Layer(aba) Sandwich;Uracil-DNA Glycosylase, subunit E;Uracil-DNA glycosylase-like domain 0.6559 4 228 3.40.470.10
ID Description Score Start End GO Terms
AF-A0A2W4KAF7-F1-model_v4 deleted 0.9507 1 189
AF-A0A066WSQ6-F1-model_v4 Uracil-DNA glycosylase-like domain-containing protein 0.942 1 226
AF-A0A101GGE5-F1-model_v4 Uracil-DNA glycosylase-like domain-containing protein 0.9415 3 202
AF-A0A7T9I3L2-F1-model_v4 deleted 0.9406 1 229
AF-A0A3G8WSR8-F1-model_v4 deleted 0.9404 1 229

Feature Viewer

pLDDT pTM Quality
87.73 0.87 High
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Predicted Structure (AlphaFold2)

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