F190817

General Info

Members Datasets Scaffolds Average Seq Length
144 92 144 167

Family's Representative Sequence

Representative Sequence 3300005339|Ga0070660_100000750|Ga0070660_10000075024
Length 197
Sequence MAATIWPSKRLTTIMQQLLNKLQARHPELRFSAGKQFCWSPETSEIFYKKFPADGKQLTVEENQQARWSLLHETGHALLEHRNYQADFELLRMEVAAWEKARELAAELEIIIDGDHVQDCLDTYRDWLYKRSICPNCTTKCLQQDDYRHYRCFNCHTVWKVSTSRFARAYRATKNIPQPATFFLRQNCPHRSSAISK

Samples

Sample ID Description Type Environment
1 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
2 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
3 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
4 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
5 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
6 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
7 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
8 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
9 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
10 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
11 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
12 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
13 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
14 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
15 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
16 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
17 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
18 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
19 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
20 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
21 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
22 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
23 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
24 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
25 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
26 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
27 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
28 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
29 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
30 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
31 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300027717 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes) (version 2) Metagenome Rhizosphere
49 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
50 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
52 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
53 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
54 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
55 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
56 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
57 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
58 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
59 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
60 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
61 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
62 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
63 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
64 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
65 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
66 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
67 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
68 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
69 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
70 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
71 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
72 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
73 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
74 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
75 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
76 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
77 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
78 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
79 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
80 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
81 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
82 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
83 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
84 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
85 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
86 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
87 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
88 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
89 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
90 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
91 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
92 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.33
Nodule 0
Rhizoplane 0
Rhizosphere 90.97
Stem 0
Stem Tuber 0
Unclassified 0.69

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10248574 3300003320 Bacteria 1469
2 Ga0068869_100160294 3300005334 Bacteria 1751
3 Ga0070666_10301341 3300005335 Unclassified 1141
4 Ga0070680_100009838 3300005336 Bacteria 7360
5 Ga0070680_100040061 3300005336 Bacteria 3791
6 Ga0070680_100075828 3300005336 Bacteria 2768
7 Ga0070660_100000750 3300005339 Bacteria 21559
8 Ga0070660_100010313 3300005339 Bacteria 6598
9 Ga0070669_100729436 3300005353 Unclassified 838
10 Ga0070671_100000001 3300005355 Bacteria 1228151
11 Ga0070659_100361721 3300005366 Bacteria 1219
12 Ga0070659_101123000 3300005366 Unclassified 693
13 Ga0070714_100000272 3300005435 Bacteria 39469
14 Ga0070714_101371205 3300005435 Unclassified 690
15 Ga0070700_100067066 3300005441 Bacteria 2279
16 Ga0070681_10136796 3300005458 Bacteria 2380
17 Ga0070679_100013155 3300005530 Bacteria 7924
18 Ga0070679_100014540 3300005530 Bacteria 7561
19 Ga0070679_100035351 3300005530 Bacteria 4957
20 Ga0070679_100146357 3300005530 Bacteria 2340
21 Ga0070679_100440598 3300005530 Bacteria 1248
22 Ga0068855_100036458 3300005563 Bacteria 5853
23 Ga0068855_100747342 3300005563 Bacteria 1043
24 Ga0068857_100025911 3300005577 Bacteria 5165
25 Ga0068856_100001111 3300005614 Bacteria 28419
26 Ga0068856_100089938 3300005614 Bacteria 3053
27 Ga0068856_102003475 3300005614 Unclassified 589
28 Ga0068860_101380839 3300005843 Bacteria 725
29 Ga0081455_10000465 3300005937 Bacteria 52932
30 Ga0081539_10011520 3300005985 Bacteria 6977
31 Ga0075365_10134073 3300006038 Bacteria 1715
32 Ga0075365_10471040 3300006038 Bacteria 887
33 Ga0075369_10000021 3300006186 Bacteria 44895
34 Ga0111539_10143525 3300009094 Bacteria 2795
35 Ga0105245_10166767 3300009098 Unclassified 2094
36 Ga0105245_10262136 3300009098 Bacteria 1682
37 Ga0105237_10300422 3300009545 Bacteria 1609
38 Ga0105238_10145437 3300009551 Unclassified 2347
39 Ga0105249_10626202 3300009553 Unclassified 1132
40 Ga0157373_10084649 3300013100 Bacteria 2235
41 Ga0157370_10058720 3300013104 Unclassified 3656
42 Ga0157369_10132066 3300013105 Bacteria 2645
43 Ga0157369_11170126 3300013105 Unclassified 785
44 Ga0157374_10004946 3300013296 Bacteria 11185
45 Ga0157374_10532558 3300013296 Unclassified 1181
46 Ga0157374_10658293 3300013296 Bacteria 1059
47 Ga0157372_10000356 3300013307 Bacteria 50272
48 Ga0157372_10128211 3300013307 Bacteria 2918
49 Ga0157372_10881627 3300013307 Unclassified 1038
50 Ga0207680_10271449 3300025903 Unclassified 1176
51 Ga0207705_10000011 3300025909 Bacteria 517768
52 Ga0207705_10015259 3300025909 Bacteria 5517
53 Ga0207707_10040609 3300025912 Bacteria 4063
54 Ga0207660_10011253 3300025917 Bacteria 5819
55 Ga0207657_10010392 3300025919 Bacteria 9290
56 Ga0207657_10017026 3300025919 Bacteria 6992
57 Ga0207652_10007767 3300025921 Bacteria 8617
58 Ga0207652_10048847 3300025921 Bacteria 3619
59 Ga0207652_10078571 3300025921 Unclassified 2881
60 Ga0207652_10119586 3300025921 Bacteria 2343
61 Ga0207687_10000004 3300025927 Bacteria 841177
62 Ga0207687_10557312 3300025927 Unclassified 962
63 Ga0207644_10000001 3300025931 Bacteria 1243214
64 Ga0207690_10160609 3300025932 Bacteria 1675
65 Ga0207690_10945092 3300025932 Unclassified 716
66 Ga0207689_10162098 3300025942 Bacteria 1842
67 Ga0207661_10452227 3300025944 Unclassified 1170
68 Ga0207667_10033792 3300025949 Bacteria 5495
69 Ga0207712_10610528 3300025961 Bacteria 944
70 Ga0207708_10099165 3300026075 Bacteria 2253
71 Ga0207702_10000527 3300026078 Bacteria 42758
72 Ga0207702_10038902 3300026078 Bacteria 3984
73 Ga0207702_12021394 3300026078 Unclassified 567
74 Ga0207674_10166154 3300026116 Unclassified 2161
75 Ga0207675_100089212 3300026118 Bacteria 2897
76 Ga0209998_10014946 3300027717 Unclassified 1623
77 Ga0207428_10373698 3300027907 Unclassified 1046
78 Ga0268264_10695237 3300028381 Bacteria 1010
79 Ga0265337_1000098 3300028556 Bacteria 42859
80 Ga0265337_1000797 3300028556 Bacteria 16593
81 Ga0265337_1001307 3300028556 Bacteria 12416
82 Ga0265334_10108512 3300028573 Unclassified 999
83 Ga0265322_10016411 3300028654 Bacteria 2137
84 Ga0265322_10124261 3300028654 Bacteria 735
85 Ga0265336_10001175 3300028666 Bacteria 12456
86 Ga0265338_10000905 3300028800 Bacteria 49902
87 Ga0265338_10006688 3300028800 Bacteria 14571
88 Ga0265338_10017889 3300028800 Bacteria 7613
89 Ga0265338_10095234 3300028800 Unclassified 2447
90 Ga0265338_10745257 3300028800 Unclassified 674
91 Ga0265324_10015177 3300029957 Bacteria 2837
92 Ga0265325_10028193 3300031241 Bacteria 3029
93 Ga0265339_10028673 3300031249 Unclassified 3164
94 Ga0265327_10000892 3300031251 Bacteria 44042
95 Ga0265327_10001541 3300031251 Bacteria 28417
96 Ga0265327_10046093 3300031251 Bacteria 2311
97 Ga0265327_10241804 3300031251 Unclassified 806
98 Ga0265316_10225142 3300031344 Unclassified 1383
99 Ga0265342_10090047 3300031712 Bacteria 1760
100 Ga0395899_0033792 3300037312 Unclassified 3841
101 Ga0395899_0116713 3300037312 Unclassified 1915
102 Ga0395900_0000815 3300037418 Bacteria 41253
103 Ga0395900_0018627 3300037418 Bacteria 7080
104 Ga0395898_0034419 3300037466 Bacteria 5049
105 Ga0395898_0052979 3300037466 Bacteria 3963
106 Ga0395905_0415306 3300037471 Bacteria 1241
107 Ga0395901_0023010 3300038443 Bacteria 6388
108 Ga0395901_0466530 3300038443 Unclassified 1289
109 Ga0395901_0561466 3300038443 Unclassified 1156
110 Ga0395901_1083747 3300038443 Unclassified 772
111 Ga0466967_0360841 3300045976 Unclassified 1408
112 Ga0495672_0000016 3300047320 Bacteria 500601
113 Ga0501031_0000213 3300049568 Bacteria 33204
114 Ga0501032_0012308 3300049569 Bacteria 6118
115 Ga0501034_0025030 3300049571 Bacteria 6073
116 Ga0501034_0544640 3300049571 Bacteria 1070
117 Ga0501036_0006077 3300049572 Bacteria 9795
118 Ga0501037_0001046 3300049573 Bacteria 20444
119 Ga0501037_0058676 3300049573 Bacteria 2808
120 Ga0501038_0004631 3300049574 Bacteria 12799
121 Ga0501039_0238070 3300049575 Unclassified 1431
122 Ga0501042_0011754 3300049578 Bacteria 5915
123 Ga0501043_0004765 3300049579 Bacteria 10997
124 Ga0501046_0000145 3300049580 Bacteria 74343
125 Ga0501047_0000332 3300049581 Bacteria 54345
126 Ga0501048_0000059 3300049582 Bacteria 54989
127 Ga0501070_0065934 3300049586 Bacteria 2998
128 Ga0501070_0110556 3300049586 Unclassified 2271
129 Ga0501073_0025878 3300049589 Bacteria 4203
130 Ga0501080_0425715 3300049742 Bacteria 1192
131 Ga0501083_0149793 3300049744 Bacteria 1527
132 Ga0501083_0179793 3300049744 Bacteria 1381
133 Ga0501035_0002792 3300049822 Bacteria 16889
134 Ga0501044_0051161 3300049823 Bacteria 4260
135 nmdc:mga00v17_142549_c1 3300050491 Bacteria 1537
136 nmdc:mga00v17_608677_c1 3300050491 Unclassified 704
137 nmdc:mga0yw44_174137_c1 3300050492 Bacteria 1414
138 nmdc:mga0yw44_407131_c1 3300050492 Unclassified 920
139 nmdc:mga0yw44_522281_c1 3300050492 Bacteria 806
140 nmdc:mga0yw44_659237_c1 3300050492 Bacteria 711
141 nmdc:mga08y16_22892_c1 3300050511 Bacteria 6594
142 nmdc:mga0sz30_2_c1 3300050516 Bacteria 626403
143 Ga0500643_000849 3300053087 Bacteria 19510
144 Ga0500568_0025122 3300053139 Bacteria 2517

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005577 Ga0068857_100025911 Ga0068857_1000259111 151
2 3300026116 Ga0207674_10166154 Ga0207674_101661541 151
3 3300050491 nmdc:mga00v17_608677_c1 nmdc:mga00v17_608677_c1_94_552 151
4 3300037471 Ga0395905_0415306 Ga0395905_0415306_402_923 152
5 3300049573 Ga0501037_0001046 Ga0501037_0001046_17311_17790 156
6 3300049578 Ga0501042_0011754 Ga0501042_0011754_4433_4912 156
7 3300049579 Ga0501043_0004765 Ga0501043_0004765_4001_4480 156
8 3300049580 Ga0501046_0000145 Ga0501046_0000145_47791_48270 156
9 3300005530 Ga0070679_100146357 Ga0070679_1001463572 157
10 3300005985 Ga0081539_10011520 Ga0081539_100115205 157
11 3300006038 Ga0075365_10134073 Ga0075365_101340732 157
12 3300013100 Ga0157373_10084649 Ga0157373_100846493 157
13 3300025921 Ga0207652_10119586 Ga0207652_101195863 157
14 3300028800 Ga0265338_10745257 Ga0265338_107452572 157
15 3300031251 Ga0265327_10000892 Ga0265327_1000089213 157
16 3300050491 nmdc:mga00v17_142549_c1 nmdc:mga00v17_142549_c1_1004_1486 157
17 3300050492 nmdc:mga0yw44_174137_c1 nmdc:mga0yw44_174137_c1_592_1074 157
18 3300005435 Ga0070714_100000272 Ga0070714_10000027222 158
19 3300005563 Ga0068855_100036458 Ga0068855_1000364585 158
20 3300006038 Ga0075365_10471040 Ga0075365_104710402 158
21 3300025949 Ga0207667_10033792 Ga0207667_100337924 158
22 3300026118 Ga0207675_100089212 Ga0207675_1000892122 158
23 3300027717 Ga0209998_10014946 Ga0209998_100149462 158
24 3300028654 Ga0265322_10124261 Ga0265322_101242612 158
25 3300028800 Ga0265338_10095234 Ga0265338_100952343 158
26 3300031251 Ga0265327_10001541 Ga0265327_1000154129 158
27 3300050492 nmdc:mga0yw44_407131_c1 nmdc:mga0yw44_407131_c1_274_759 158
28 3300050492 nmdc:mga0yw44_522281_c1 nmdc:mga0yw44_522281_c1_200_685 158
29 3300053087 Ga0500643_000849 Ga0500643_000849_3537_4022 158
30 3300005336 Ga0070680_100075828 Ga0070680_1000758284 159
31 3300005530 Ga0070679_100440598 Ga0070679_1004405982 159
32 3300006186 Ga0075369_10000021 Ga0075369_100000215 159
33 3300050516 nmdc:mga0sz30_2_c1 nmdc:mga0sz30_2_c1_51907_52389 159
34 3300047320 Ga0495672_0000016 Ga0495672_0000016_450972_451466 160
35 3300050492 nmdc:mga0yw44_659237_c1 nmdc:mga0yw44_659237_c1_93_596 160
36 3300005366 Ga0070659_100361721 Ga0070659_1003617212 161
37 3300005441 Ga0070700_100067066 Ga0070700_1000670663 161
38 3300005530 Ga0070679_100035351 Ga0070679_1000353516 161
39 3300005563 Ga0068855_100747342 Ga0068855_1007473422 161
40 3300005614 Ga0068856_100089938 Ga0068856_1000899382 161
41 3300005843 Ga0068860_101380839 Ga0068860_1013808392 161
42 3300009094 Ga0111539_10143525 Ga0111539_101435256 161
43 3300009098 Ga0105245_10262136 Ga0105245_102621362 161
44 3300009545 Ga0105237_10300422 Ga0105237_103004222 161
45 3300009553 Ga0105249_10626202 Ga0105249_106262022 161
46 3300013296 Ga0157374_10658293 Ga0157374_106582932 161
47 3300013307 Ga0157372_10881627 Ga0157372_108816272 161
48 3300025921 Ga0207652_10048847 Ga0207652_100488473 161
49 3300025932 Ga0207690_10160609 Ga0207690_101606092 161
50 3300025961 Ga0207712_10610528 Ga0207712_106105282 161
51 3300026075 Ga0207708_10099165 Ga0207708_100991652 161
52 3300026078 Ga0207702_10038902 Ga0207702_100389022 161
53 3300027907 Ga0207428_10373698 Ga0207428_103736982 161
54 3300028381 Ga0268264_10695237 Ga0268264_106952371 161
55 3300028556 Ga0265337_1000098 Ga0265337_100009813 161
56 3300028556 Ga0265337_1000797 Ga0265337_10007972 161
57 3300028556 Ga0265337_1001307 Ga0265337_10013076 161
58 3300028573 Ga0265334_10108512 Ga0265334_101085122 161
59 3300028654 Ga0265322_10016411 Ga0265322_100164113 161
60 3300028666 Ga0265336_10001175 Ga0265336_100011752 161
61 3300028800 Ga0265338_10000905 Ga0265338_100009055 161
62 3300028800 Ga0265338_10006688 Ga0265338_100066884 161
63 3300028800 Ga0265338_10017889 Ga0265338_100178892 161
64 3300029957 Ga0265324_10015177 Ga0265324_100151771 161
65 3300031241 Ga0265325_10028193 Ga0265325_100281933 161
66 3300031249 Ga0265339_10028673 Ga0265339_100286734 161
67 3300031251 Ga0265327_10046093 Ga0265327_100460933 161
68 3300031344 Ga0265316_10225142 Ga0265316_102251422 161
69 3300031712 Ga0265342_10090047 Ga0265342_100900472 161
70 3300050511 nmdc:mga08y16_22892_c1 nmdc:mga08y16_22892_c1_178_672 161
71 3300005937 Ga0081455_10000465 Ga0081455_1000046515 162
72 3300037312 Ga0395899_0116713 Ga0395899_0116713_91_588 162
73 3300038443 Ga0395901_0023010 Ga0395901_0023010_2394_2891 162
74 3300005336 Ga0070680_100009838 Ga0070680_1000098383 163
75 3300005336 Ga0070680_100040061 Ga0070680_1000400612 163
76 3300005339 Ga0070660_100010313 Ga0070660_1000103133 163
77 3300005366 Ga0070659_101123000 Ga0070659_1011230002 163
78 3300005435 Ga0070714_101371205 Ga0070714_1013712051 163
79 3300005458 Ga0070681_10136796 Ga0070681_101367963 163
80 3300005530 Ga0070679_100013155 Ga0070679_1000131558 163
81 3300005530 Ga0070679_100014540 Ga0070679_1000145402 163
82 3300005614 Ga0068856_102003475 Ga0068856_1020034751 163
83 3300009098 Ga0105245_10166767 Ga0105245_101667672 163
84 3300013105 Ga0157369_10132066 Ga0157369_101320663 163
85 3300013105 Ga0157369_11170126 Ga0157369_111701261 163
86 3300013296 Ga0157374_10004946 Ga0157374_1000494610 163
87 3300013296 Ga0157374_10532558 Ga0157374_105325581 163
88 3300013307 Ga0157372_10000356 Ga0157372_100003567 163
89 3300013307 Ga0157372_10128211 Ga0157372_101282113 163
90 3300025909 Ga0207705_10015259 Ga0207705_100152596 163
91 3300025912 Ga0207707_10040609 Ga0207707_100406094 163
92 3300025917 Ga0207660_10011253 Ga0207660_100112534 163
93 3300025919 Ga0207657_10017026 Ga0207657_100170267 163
94 3300025921 Ga0207652_10007767 Ga0207652_100077676 163
95 3300025921 Ga0207652_10078571 Ga0207652_100785713 163
96 3300025927 Ga0207687_10557312 Ga0207687_105573121 163
97 3300025932 Ga0207690_10945092 Ga0207690_109450922 163
98 3300025944 Ga0207661_10452227 Ga0207661_104522272 163
99 3300026078 Ga0207702_12021394 Ga0207702_120213941 163
100 3300031251 Ga0265327_10241804 Ga0265327_102418041 163
101 3300037312 Ga0395899_0033792 Ga0395899_0033792_2307_2813 163
102 3300037418 Ga0395900_0000815 Ga0395900_0000815_37684_38190 163
103 3300037466 Ga0395898_0052979 Ga0395898_0052979_3168_3674 163
104 3300038443 Ga0395901_0561466 Ga0395901_0561466_564_1064 163
105 3300045976 Ga0466967_0360841 Ga0466967_0360841_325_825 163
106 3300013104 Ga0157370_10058720 Ga0157370_100587203 164
107 3300025927 Ga0207687_10000004 Ga0207687_10000004257 164
108 3300037418 Ga0395900_0018627 Ga0395900_0018627_4259_4768 164
109 3300037466 Ga0395898_0034419 Ga0395898_0034419_2195_2704 164
110 3300049571 Ga0501034_0544640 Ga0501034_0544640_255_770 164
111 3300049573 Ga0501037_0058676 Ga0501037_0058676_1141_1656 164
112 3300049586 Ga0501070_0110556 Ga0501070_0110556_44_556 164
113 3300053139 Ga0500568_0025122 Ga0500568_0025122_1179_1700 164
114 3300005334 Ga0068869_100160294 Ga0068869_1001602944 165
115 3300025942 Ga0207689_10162098 Ga0207689_101620982 165
116 3300049744 Ga0501083_0149793 Ga0501083_0149793_765_1271 165
117 3300005355 Ga0070671_100000001 Ga0070671_1000000016 166
118 3300009551 Ga0105238_10145437 Ga0105238_101454372 166
119 3300025903 Ga0207680_10271449 Ga0207680_102714492 166
120 3300025931 Ga0207644_10000001 Ga0207644_1000000178 166
121 3300049568 Ga0501031_0000213 Ga0501031_0000213_23114_23629 166
122 3300049569 Ga0501032_0012308 Ga0501032_0012308_1222_1737 166
123 3300049571 Ga0501034_0025030 Ga0501034_0025030_1098_1613 166
124 3300049572 Ga0501036_0006077 Ga0501036_0006077_156_671 166
125 3300049574 Ga0501038_0004631 Ga0501038_0004631_1734_2249 166
126 3300049575 Ga0501039_0238070 Ga0501039_0238070_226_741 166
127 3300049581 Ga0501047_0000332 Ga0501047_0000332_23114_23629 166
128 3300049582 Ga0501048_0000059 Ga0501048_0000059_3036_3551 166
129 3300049586 Ga0501070_0065934 Ga0501070_0065934_336_851 166
130 3300049589 Ga0501073_0025878 Ga0501073_0025878_448_963 166
131 3300049742 Ga0501080_0425715 Ga0501080_0425715_342_857 166
132 3300049744 Ga0501083_0179793 Ga0501083_0179793_417_932 166
133 3300049822 Ga0501035_0002792 Ga0501035_0002792_8291_8806 166
134 3300049823 Ga0501044_0051161 Ga0501044_0051161_178_693 166
135 3300005335 Ga0070666_10301341 Ga0070666_103013412 170
136 3300005353 Ga0070669_100729436 Ga0070669_1007294361 170
137 3300038443 Ga0395901_0466530 Ga0395901_0466530_37_573 171
138 3300038443 Ga0395901_1083747 Ga0395901_1083747_160_696 171
139 3300025909 Ga0207705_10000011 Ga0207705_10000011591 172
140 3300003320 rootH2_10248574 rootH2_102485742 174
141 3300005339 Ga0070660_100000750 Ga0070660_10000075024 174
142 3300005614 Ga0068856_100001111 Ga0068856_10000111125 174
143 3300025919 Ga0207657_10010392 Ga0207657_100103929 174
144 3300026078 Ga0207702_10000527 Ga0207702_100005279 174

Structural Annotation

Top 5 Hits

ID Description Score Start End
2ba1-assembly1.cif.gz_A archaeal exosome core 0.8445 116 145
7oqy-assembly1.cif.gz_Y cryo-em structure of the cellular negative regulator tfs4 bound to the archaeal rna polymerase 0.7549 118 146
5n5y-assembly1.cif.gz_I cryo-em structure of rna polymerase i in complex with rrn3 and core factor (orientation iii) 0.7462 116 146
5g5l-assembly1.cif.gz_I rna polymerase i-rrn3 complex at 4.8 a resolution 0.7312 116 147
2akl-assembly1.cif.gz_A solution structure for phn-a like protein pa0128 from pseudomonas aeruginosa 0.7234 118 147
ID Description Score Start End Superfamily
af_Q9LQM5_462_520_3.30.40.10 Alpha Beta;2-Layer Sandwich;Herpes Virus-1;Zinc/RING finger domain, C3HC4 (zinc finger) 0.8278 117 145 3.30.40.10
af_O59821_47_180_2.40.50.140 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.8237 118 145 2.40.50.140
2ba1A03 Mainly Beta;Single Sheet;Ubiquitin Ligase Nedd4; Chain: W;; 0.8217 116 146 2.20.70.10
af_Q9VM61_6_48_3.30.160.60 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Classic Zinc Finger 0.7922 126 147 3.30.160.60
af_A0A0R4IWH1_120_161_3.30.160.60 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Classic Zinc Finger 0.7595 126 148 3.30.160.60
ID Description Score Start End GO Terms
AF-A0A1F7QNS9-F1-model_v4 IrrE N-terminal-like domain-containing protein 0.9906 11 149
AF-A0A1M3BTR2-F1-model_v4 IrrE N-terminal-like domain-containing protein 0.9779 12 151
AF-A0A7X6P5P0-F1-model_v4 ImmA/IrrE family metallo-endopeptidase 0.9774 14 144
AF-A0A7C7HUM4-F1-model_v4 IrrE N-terminal-like domain-containing protein 0.976 15 147
AF-A0A857MMT3-F1-model_v4 IrrE N-terminal-like domain-containing protein 0.9739 14 144

Feature Viewer

pLDDT pTM Quality
84.73 0.77 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map