F190227

General Info

Members Datasets Scaffolds Average Seq Length
143 113 286 322

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2818991459|2819672501
Length 351
Sequence ISHIYESPRFFLHFRRRMKALAATNMQRKERMKEMSTMSGQTTRNTKVSSSGSLLLRMKKNWELYLFIAPAFLYFLIFQYGPMYGIQIAFKNFTPSKGIFGSDWVGFAHFERFFHSYYFWDLLWNTFSLSLYELAIGFPLPIILALAFNEVRNGFFKKGVQTITYAPHFISVVVMAGMVITFLSPSSGIIVKLMELFGIHAPAFLTDPSWFKTVYVFSGVWQNTGWGTIIYLAALSGVDPQLHEAAIVDGASRFKRVIHINLPTIIPTITILLILNVGNILGVGYEKVLLLQNPLNINSSDVISTFVYRTGLVSAQYSFSTAVGLFNSLVNAILLISVNKIAKRTSQTSLW

Samples

Sample ID Description Type Environment
1 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
2 3300003751 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 Metagenome Endosphere
3 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
4 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
5 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
6 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
7 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
8 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
9 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
10 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
11 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
12 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
13 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
14 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
15 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
16 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
17 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
18 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
19 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
20 3300030734 Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 5 Metagenome Rhizosphere
21 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
22 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
23 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
24 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
25 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
26 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
27 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
28 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
29 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
30 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
31 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
32 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
33 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
34 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
35 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
36 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
37 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
38 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
39 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
40 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
41 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
42 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
43 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
44 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
45 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
46 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
47 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
48 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
49 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
50 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
51 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
52 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
53 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
54 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
55 2818991459 Paenibacillus sp. 597 Isolate Unclassified
56 2515154155 Actinopolymorpha alba DSM 45243 Isolate Rhizosphere
57 2524023129 Paenibacillus pinihumi DSM 23905 Isolate Rhizosphere
58 2563366752 Paenibacillus pini JCM 16418 Isolate Rhizosphere
59 2643221690 Cellulomonas sp. Root485 Isolate Unclassified
60 2738541272 Promicromonospora sp. AC04 Isolate Unclassified
61 2738543010 Bacillus sp. YR335 Isolate Unclassified
62 2738543027 Promicromonospora sp. CF082 Isolate Unclassified
63 2739367654 Promicromonospora sp. YR516 Isolate Unclassified
64 2758568522 Promicromonospora thailandica SAI-039 Isolate Unclassified
65 2758568621 Promicromonospora sukumoe SAI-064 Isolate Unclassified
66 2773857763 Microbacterium sp. SAI-030 Isolate Unclassified
67 2791355222 Paenibacillus oryzae 1DrF-4 Isolate Unclassified
68 2808606394 Promicromonospora sp. C35 Isolate Unclassified
69 2808606447 Microbacterium sp. HAR-UPW-R2A-48 Isolate Unclassified
70 2811994880 Cellulomonas sp. SLBN-39 Isolate Unclassified
71 2816332119 Kribbella amoyensis DSM 24683 Isolate Rhizosphere
72 2818991441 Niallia circulans 3243 Isolate Rhizosphere
73 2821111986 Paenibacillus illinoisensis 582 Isolate Unclassified
74 2857453340 Paenibacillus sp. R-74130 Isolate Unclassified
75 2884994152 Cellulomonas sp. H30R-01 Isolate Rhizosphere
76 2885526491 Paenibacillus sp. LK1 Isolate Rhizosphere
77 2888578766 Paenibacillus lycopersici 12200R-189 Isolate Rhizosphere
78 2889042446 Paenibacillus sp. 37 Isolate Rhizosphere
79 2889049205 Paenibacillus rhizovicinus 14171R-81 Isolate Rhizosphere
80 2904113452 Paenibacillus paridis py1325 Isolate Unclassified
81 2904162308 Paenibacillus sp. AD87 Isolate Unclassified
82 2904490793 Paenibacillus sp. 1295 Isolate Rhizosphere
83 2904755435 Paenibacillus aceris KACC 19194 Isolate Rhizosphere
84 2906799679 Microbacterium karelineae TRM80801 Isolate Unclassified
85 2907202186 Paenibacillus sp. HJL G12 Isolate Unclassified
86 2916971899 Alkalihalobacillus miscanthi AK13 Isolate Rhizosphere
87 2919160200 Paenibacillus sp. 2003 Isolate Unclassified
88 2925326138 Paenibacillus hemerocallicola KCTC 33185 Isolate Unclassified
89 2928090899 Microbacterium sp. 1262 Isolate Rhizosphere
90 2928510474 Sporosarcina psychrophila 1288 Isolate Rhizosphere
91 2929206907 Paenibacillus sp. R-74146 Hybrid assembly Isolate Unclassified
92 2931384279 Paenibacillus sp. DR312 Isolate Rhizosphere
93 2938649242 Paenibacillus helianthi P26E Isolate Rhizosphere
94 2945991243 Paenibacillus sp. B21a W2I17 Isolate Rhizosphere
95 2946041624 Microbacterium natoriense W4I9-1 Isolate Rhizosphere
96 2946053406 Paenibacillus sp. W4I10 Isolate Rhizosphere
97 2968558590 Paenibacillus sp. P3E Isolate Rhizosphere
98 2971403814 Paenibacillus tritici LMG 29502 Isolate Unclassified
99 2980182181 Paenibacillus cymbidii R196 Isolate Unclassified
100 2984527788 Paenibacillus sp. SORGH_AS306 Isolate Aerial Root
101 2984532647 Paenibacillus sp. SORGH_AS338 Isolate Aerial Root
102 2984580707 Microbacterium paludicola SORGH_AS919 Isolate Aerial Root
103 2996632988 Paenibacillus sp. P32E Isolate Rhizosphere
104 3001267043 Bacillus sp. FJAT-49870 Isolate Rhizosphere
105 3001272096 Lederbergia citrisecunda FJAT-49732 Isolate Rhizosphere
106 3006969106 Bacillus sp. FJAT-50079 Isolate Rhizosphere
107 3006988479 Bacillus sp. FJAT-49711 Isolate Rhizosphere
108 8002317523 Cohnella sp. GbtcB17 Isolate Unclassified
109 8045830549 Microbacterium yannicii DSM 23203 Isolate Unclassified
110 8054795415 Paenibacillus periandrae PM10 Isolate Nodule
111 8055632911 Paenibacillus radicibacter N1-5-1-14 Isolate Unclassified
112 8056579771 Promicromonospora iranensis UTMC 00792 Isolate Rhizosphere
113 8057733483 Paenibacillus apiarius MW-14 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 45.45
Metatranscriptomes 1.4
Isolates 53.15

Biome Distribution

Category Percentage (%)
Aerial Root 2.1
Bulb 0
Endosphere 11.19
Nodule 0.7
Rhizoplane 2.1
Rhizosphere 52.45
Stem 0
Stem Tuber 0
Unclassified 0.7

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10105264 3300003320 Bacteria 2083
2 Ga0055538_1000569 3300003751 Bacteria 12694
3 Ga0055538_1001208 3300003751 Bacteria 5416
4 Ga0055541_1000197 3300003841 Bacteria 26286
5 Ga0070668_100100131 3300005347 Bacteria 2295
6 Ga0070713_100130993 3300005436 Bacteria 2212
7 Ga0105251_10001659 3300009011 Bacteria 18803
8 Ga0105244_10028814 3300009036 Bacteria 2975
9 Ga0157372_10025037 3300013307 Bacteria 6485
10 Ga0157375_10209160 3300013308 Bacteria 2108
11 Ga0206356_10123634 3300020070 Bacteria 1371
12 Ga0224712_10002972 3300022467 Bacteria 4304
13 Ga0209784_100098 3300025224 Bacteria 103150
14 Ga0209784_100102 3300025224 Bacteria 99732
15 Ga0209784_100106 3300025224 Bacteria 98148
16 Ga0209784_100529 3300025224 Bacteria 14208
17 Ga0209566_100316 3300025225 Bacteria 43754
18 Ga0209566_102260 3300025225 Bacteria 3747
19 Ga0209566_104230 3300025225 Bacteria 1995
20 Ga0209437_100306 3300025233 Bacteria 67153
21 Ga0209437_101037 3300025233 Bacteria 9340
22 Ga0209258_103568 3300025242 Bacteria 3296
23 Ga0209676_1045263 3300025292 Bacteria 1199
24 Ga0209025_1004341 3300025294 Bacteria 12387
25 Ga0209025_1030757 3300025294 Bacteria 2560
26 Ga0207713_1001667 3300025735 Bacteria 17206
27 Ga0207668_10079455 3300025972 Bacteria 2373
28 Ga0316179_1111974 3300030734 Bacteria 1898
29 Ga0307408_100153359 3300031548 Bacteria 1821
30 Ga0307413_10227904 3300031824 Bacteria 1366
31 Ga0307416_100096001 3300032002 Bacteria 2562
32 Ga0395899_0086026 3300037312 Unclassified 2284
33 Ga0395899_0300395 3300037312 Bacteria 1086
34 Ga0395898_0228444 3300037466 Bacteria 1775
35 Ga0451797_1574288 3300041453 Bacteria 2100
36 Ga0466969_0010575 3300044656 Bacteria 4890
37 Ga0466961_0032073 3300044693 Bacteria 3376
38 Ga0466963_0056727 3300044694 Bacteria 2607
39 Ga0466971_0001642 3300044719 Bacteria 9445
40 Ga0466970_0061355 3300044765 Bacteria 2014
41 Ga0466959_0006539 3300045049 Bacteria 8086
42 Ga0495610_0116937 3300046512 Bacteria 1174
43 Ga0495626_0025796 3300048091 Bacteria 2871
44 Ga0496111_0047174 3300048914 Bacteria 3102
45 Ga0496114_0407044 3300048917 Bacteria 1205
46 Ga0496117_0037099 3300048920 Bacteria 3636
47 Ga0496119_0081162 3300048922 Bacteria 1869
48 Ga0496120_0052965 3300048923 Bacteria 2307
49 Ga0496122_0035861 3300048925 Bacteria 4025
50 Ga0496124_0016062 3300048927 Bacteria 7143
51 Ga0496124_0044956 3300048927 Bacteria 3787
52 Ga0496125_0000066 3300048928 Bacteria 249043
53 Ga0496126_0070633 3300048929 Bacteria 3110
54 Ga0501032_0090175 3300049569 Bacteria 2034
55 Ga0501034_0015249 3300049571 Bacteria 7898
56 Ga0501036_0051596 3300049572 Bacteria 3483
57 Ga0501038_0080564 3300049574 Bacteria 2744
58 Ga0501046_0097498 3300049580 Bacteria 2258
59 Ga0501047_0034148 3300049581 Bacteria 4911
60 Ga0501047_0214328 3300049581 Bacteria 1783
61 Ga0501083_0000162 3300049744 Bacteria 43696
62 Ga0501083_0005369 3300049744 Bacteria 9068
63 Ga0501035_0032395 3300049822 Bacteria 4755
64 Ga0501044_0044218 3300049823 Bacteria 4624
65 Ga0501044_0104010 3300049823 Bacteria 2853
66 Ga0501082_0013602 3300060353 Bacteria 6992
67 Ga0466962_0006724 3300061719 Bacteria 5511
68 2819672501 2818991459 Bacteria 8736032
69 2515851191 2515154155 Bacteria 7985436
70 2524187999 2524023129 Bacteria 6762600
71 2563928414 2563366752 Bacteria 4961801
72 2644505364 2643221690 Bacteria 4654705
73 2738697101 2738541272 Bacteria 6848551
74 2739234200 2738543010 Bacteria 5583595
75 2739324273 2738543027 Bacteria 6409078
76 2739607111 2739367654 Bacteria 6049412
77 2760304981 2758568522 Bacteria 5953541
78 2760621183 2758568621 Bacteria 5967089
79 2774398235 2773857763 Bacteria 4180068
80 2793183390 2791355222 Bacteria 5898266
81 2809025984 2808606394 Bacteria 6248540
82 2809228766 2808606447 Bacteria 3572005
83 2812363960 2811994880 Bacteria 4147780
84 2816425473 2816332119 Bacteria 8120218
85 2819570319 2818991441 Bacteria 5062707
86 2819670040 2818991459 Bacteria 8736032
87 2821112380 2821111986 Bacteria 6894338
88 2821114560 2821111986 Bacteria 6894338
89 2857454463 2857453340 Bacteria 8090534
90 2884996909 2884994152 Bacteria 4492978
91 2885528722 2885526491 Bacteria 7164189
92 2885531173 2885526491 Bacteria 7164189
93 2888578768 2888578766 Bacteria 6743310
94 2888579927 2888578766 Bacteria 6743310
95 2889043719 2889042446 Bacteria 7618936
96 2889046268 2889042446 Bacteria 7618936
97 2889052705 2889049205 Bacteria 7524325
98 2904118844 2904113452 Bacteria 7796941
99 2904166564 2904162308 Bacteria 7086713
100 2904493171 2904490793 Bacteria 7046938
101 2904495085 2904490793 Bacteria 7046938
102 2904760573 2904755435 Bacteria 7986759
103 2906802739 2906799679 Bacteria 4031749
104 2907204619 2907202186 Bacteria 6632024
105 2916972647 2916971899 Bacteria 4250608
106 2919162459 2919160200 Bacteria 6929020
107 2919163714 2919160200 Bacteria 6929020
108 2925333186 2925326138 Bacteria 9652120
109 2928091981 2928090899 Bacteria 3158267
110 2928512316 2928510474 Bacteria 4815308
111 2929207987 2929206907 Bacteria 5918291
112 2931387180 2931384279 Bacteria 7299545
113 2931389717 2931384279 Bacteria 7299545
114 2938650122 2938649242 Bacteria 7118381
115 2945991591 2945991243 Bacteria 7008369
116 2945994231 2945991243 Bacteria 7008369
117 2946045478 2946041624 Bacteria 4191385
118 2946054305 2946053406 Bacteria 6978655
119 2946056994 2946053406 Bacteria 6978655
120 2968559230 2968558590 Bacteria 6956864
121 2971405145 2971403814 Bacteria 7370929
122 2980182975 2980182181 Bacteria 9454109
123 2980183896 2980182181 Bacteria 9454109
124 2980184822 2980182181 Bacteria 9454109
125 2980185551 2980182181 Bacteria 9454109
126 2980187804 2980182181 Bacteria 9454109
127 2980188596 2980182181 Bacteria 9454109
128 2984529365 2984527788 Bacteria 5288478
129 2984535471 2984532647 Bacteria 5288506
130 2984581251 2984580707 Bacteria 3351387
131 2996635923 2996632988 Bacteria 6921523
132 3001269806 3001267043 Bacteria 4823521
133 3001272386 3001272096 Bacteria 4729684
134 3006970951 3006969106 Bacteria 4739423
135 3006989328 3006988479 Bacteria 4767936
136 8002317971 8002317523 Bacteria 8051857
137 8002319299 8002317523 Bacteria 8051857
138 8045833489 8045830549 Bacteria 4444727
139 8054800635 8054795415 Bacteria 9785225
140 8055634319 8055632911 Bacteria 5283357
141 8056579919 8056579771 Bacteria 5840325
142 8057733607 8057733483 Bacteria 6578323
143 8057735960 8057733483 Bacteria 6578323
144 rootH2_10105264
145 Ga0055538_1000569
146 Ga0055538_1001208
147 Ga0055541_1000197
148 Ga0070668_100100131
149 Ga0070713_100130993
150 Ga0105251_10001659
151 Ga0105244_10028814
152 Ga0157372_10025037
153 Ga0157375_10209160
154 Ga0206356_10123634
155 Ga0224712_10002972
156 Ga0209784_100098
157 Ga0209784_100102
158 Ga0209784_100106
159 Ga0209784_100529
160 Ga0209566_100316
161 Ga0209566_102260
162 Ga0209566_104230
163 Ga0209437_100306
164 Ga0209437_101037
165 Ga0209258_103568
166 Ga0209676_1045263
167 Ga0209025_1004341
168 Ga0209025_1030757
169 Ga0207713_1001667
170 Ga0207668_10079455
171 Ga0316179_1111974
172 Ga0307408_100153359
173 Ga0307413_10227904
174 Ga0307416_100096001
175 Ga0395899_0086026
176 Ga0395899_0300395
177 Ga0395898_0228444
178 Ga0451797_1574288
179 Ga0466969_0010575
180 Ga0466961_0032073
181 Ga0466963_0056727
182 Ga0466971_0001642
183 Ga0466970_0061355
184 Ga0466959_0006539
185 Ga0495610_0116937
186 Ga0495626_0025796
187 Ga0496111_0047174
188 Ga0496114_0407044
189 Ga0496117_0037099
190 Ga0496119_0081162
191 Ga0496120_0052965
192 Ga0496122_0035861
193 Ga0496124_0016062
194 Ga0496124_0044956
195 Ga0496125_0000066
196 Ga0496126_0070633
197 Ga0501032_0090175
198 Ga0501034_0015249
199 Ga0501036_0051596
200 Ga0501038_0080564
201 Ga0501046_0097498
202 Ga0501047_0034148
203 Ga0501047_0214328
204 Ga0501083_0000162
205 Ga0501083_0005369
206 Ga0501035_0032395
207 Ga0501044_0044218
208 Ga0501044_0104010
209 Ga0501082_0013602
210 Ga0466962_0006724
211 2819672501
212 2515851191
213 2524187999
214 2563928414
215 2644505364
216 2738697101
217 2739234200
218 2739324273
219 2739607111
220 2760304981
221 2760621183
222 2774398235
223 2793183390
224 2809025984
225 2809228766
226 2812363960
227 2816425473
228 2819570319
229 2819670040
230 2821112380
231 2821114560
232 2857454463
233 2884996909
234 2885528722
235 2885531173
236 2888578768
237 2888579927
238 2889043719
239 2889046268
240 2889052705
241 2904118844
242 2904166564
243 2904493171
244 2904495085
245 2904760573
246 2906802739
247 2907204619
248 2916972647
249 2919162459
250 2919163714
251 2925333186
252 2928091981
253 2928512316
254 2929207987
255 2931387180
256 2931389717
257 2938650122
258 2945991591
259 2945994231
260 2946045478
261 2946054305
262 2946056994
263 2968559230
264 2971405145
265 2980182975
266 2980183896
267 2980184822
268 2980185551
269 2980187804
270 2980188596
271 2984529365
272 2984535471
273 2984581251
274 2996635923
275 3001269806
276 3001272386
277 3006970951
278 3006989328
279 8002317971
280 8002319299
281 8045833489
282 8054800635
283 8055634319
284 8056579919
285 8057733607
286 8057735960

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00528

BPD_transp_1

Binding-protein-dependent transport system inner membrane component

137

347

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
4xtc-assembly1.cif.gz_M crystal structure of bacterial alginate abc transporter in complex with alginate pentasaccharide-bound periplasmic protein 0.9231 42 335
4tqv-assembly4.cif.gz_M crystal structure of a bacterial abc transporter involved in the import of the acidic polysaccharide alginate 0.9217 42 330
4tqu-assembly1.cif.gz_M crystal structure of a bacterial abc transporter involved in the import of the acidic polysaccharide alginate 0.9192 42 330
4xtc-assembly1.cif.gz_M crystal structure of bacterial alginate abc transporter in complex with alginate pentasaccharide-bound periplasmic protein 0.9078 42 335
4tqv-assembly4.cif.gz_M crystal structure of a bacterial abc transporter involved in the import of the acidic polysaccharide alginate 0.9002 42 330
ID Description Score Start End Superfamily
4tquM01 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.9539 90 330 1.10.3720.10
4tquM01 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.9351 90 330 1.10.3720.10
af_P71896_49_286_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.8931 89 329 1.10.3720.10
af_O53484_49_294_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.8909 90 333 1.10.3720.10
af_O53484_49_294_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.8807 90 333 1.10.3720.10
ID Description Score Start End GO Terms
AF-A0A0A0BL21-F1-model_v4 Protein lplB 0.9642 149 336 GO:0005886
GO:0055085
AF-A0A854XSR2-F1-model_v4 deleted 0.9614 56 336
AF-A0A2N5N932-F1-model_v4 ABC-type polysaccharide transport system, permease component 0.9608 84 336 GO:0005886
GO:0055085
AF-A0A4Y7X0Y2-F1-model_v4 deleted 0.9595 71 336
AF-A0A0A0BL21-F1-model_v4 Protein lplB 0.9593 149 336 GO:0005886
GO:0055085

Map