F189939

General Info

Members Datasets Scaffolds Average Seq Length
143 100 121 270

Family's Representative Sequence

Representative Sequence 3300049570|Ga0501033_0053068|Ga0501033_0053068_367_1251
Length 294
Sequence MSLPQTASGSLSSTAADSSTPDVHASGSAKSPPAYEVFALKYATRPARRPANFLGGDPHDAPMPMDYYVWVIRDGRRIVMVDTGFAQDMADKRHRTLLRHPAEALRLLDIRPEDVGDIVITHLHNDHAGTLGDYPNARFHLQDSEMAFATGRHMCCGMLNRAYEPDHVCGMVRLVYGDRVVFHDGDAVIAPGVSVHRVGGHTDGLQAVRVHTARGWVVLASDASHYYEHFEQDRCFPLVYSVGDVLQGYRRLKSLAASPAHVVPGHDPLVMARYPSAGPALDGIVARLDVAPKS

Samples

Sample ID Description Type Environment
1 2501025502 Paraburkholderia unamae MTI-641 Isolate Rhizosphere
2 2510917013 Paraburkholderia unamae MTI-641 Isolate Rhizosphere
3 2599185292 Achromobacter sp. NFACC18-2 Isolate Rhizoplane
4 2599185319 Pseudomonas sp. NFACC24-1 Isolate Rhizoplane
5 2599185323 Pseudomonas sp. NFACC37-1 Isolate Rhizoplane
6 2643221569 Achromobacter sp. Root565 Isolate Unclassified
7 2643221603 Noviherbaspirillum sp. Root189 Isolate Unclassified
8 2855730933 Achromobacter sp. HZ28 Isolate Nodule
9 2855767633 Achromobacter sp. HZ34 Isolate Nodule
10 2858950400 Achromobacter sp. K91 Isolate Unclassified
11 2881412998 Achromobacter aloeverae AVA-1 Isolate Unclassified
12 2941479691
13 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
14 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
15 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
16 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
17 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
18 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
19 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
20 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
21 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
22 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
23 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
24 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
25 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
26 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
27 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
28 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
29 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
30 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
31 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
32 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
33 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
34 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
35 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
36 3300015683 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_F04 Metagenome Rhizosphere
37 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
38 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
39 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
47 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
50 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
51 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
52 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
53 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
54 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
55 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
56 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
57 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
58 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
59 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
60 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
61 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
62 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
63 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
64 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
65 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
66 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
67 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
68 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
69 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
70 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
71 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
72 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
73 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
74 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
75 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
76 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
77 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
78 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
79 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
80 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
81 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
82 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
83 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
84 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
85 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
86 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
87 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
88 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
89 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
90 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
91 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
93 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
94 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
95 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
96 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
97 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
98 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
99 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
100 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 86.71
Metatranscriptomes 0
Isolates 13.29

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 12.59
Nodule 4.2
Rhizoplane 4.2
Rhizosphere 58.04
Stem 0
Stem Tuber 0
Unclassified 20.98

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25151J46595_10000112 3300003187 Bacteria 109301
2 Ga0055525_1000004 3300003759 Bacteria 888039
3 Ga0068869_100024101 3300005334 Bacteria 4213
4 Ga0070666_10116655 3300005335 Bacteria 1849
5 Ga0070667_100542499 3300005367 Bacteria 1068
6 Ga0070694_100125341 3300005444 Bacteria 1848
7 Ga0070706_100012077 3300005467 Bacteria 8015
8 Ga0070707_100072419 3300005468 Bacteria 3321
9 Ga0070695_100245670 3300005545 Bacteria 1300
10 Ga0070704_100195718 3300005549 Bacteria 1628
11 Ga0068859_100016375 3300005617 Bacteria 7448
12 Ga0068860_100204773 3300005843 Bacteria 1913
13 Ga0075364_10078773 3300006051 Bacteria 2177
14 Ga0075369_10076010 3300006186 Bacteria 1484
15 Ga0075366_10024262 3300006195 Bacteria 3538
16 Ga0075366_10057655 3300006195 Bacteria 2308
17 Ga0075366_10184212 3300006195 Bacteria 1268
18 Ga0075428_100001017 3300006844 Bacteria 29740
19 Ga0075434_100629295 3300006871 Bacteria 1092
20 Ga0097620_100016375 3300006931 Bacteria 7448
21 Ga0111539_10006886 3300009094 Bacteria 14601
22 Ga0111539_10041407 3300009094 Bacteria 5538
23 Ga0157371_10000196 3300013102 Bacteria 89174
24 Ga0157371_10052259 3300013102 Bacteria 2902
25 Ga0157378_10167474 3300013297 Bacteria 2059
26 Ga0157372_10235780 3300013307 Unclassified 2122
27 Ga0163163_10098805 3300014325 Bacteria 2940
28 Ga0183362_10002 3300015683 Bacteria 1432711
29 Ga0209563_100013 3300025230 Bacteria 941463
30 Ga0209025_1000003 3300025294 Bacteria 1366495
31 Ga0209025_1000064 3300025294 Bacteria 301309
32 Ga0207684_10050989 3300025910 Bacteria 3511
33 Ga0207707_10221262 3300025912 Bacteria 1648
34 Ga0207695_10051415 3300025913 Bacteria 4327
35 Ga0207657_10154363 3300025919 Unclassified 1868
36 Ga0207652_10391706 3300025921 Unclassified 1254
37 Ga0207646_10084688 3300025922 Bacteria 2836
38 Ga0207689_10032504 3300025942 Bacteria 4340
39 Ga0207428_10037645 3300027907 Bacteria 3935
40 Ga0268266_10783091 3300028379 Bacteria 921
41 Ga0268264_10175264 3300028381 Bacteria 1943
42 Ga0307515_10095527 3300028794 Bacteria 3657
43 Ga0265338_10000857 3300028800 Bacteria 51426
44 Ga0265340_10033602 3300031247 Bacteria 2553
45 Ga0265327_10027534 3300031251 Bacteria 3269
46 Ga0265327_10136914 3300031251 Bacteria 1147
47 Ga0307410_10047130 3300031852 Bacteria 2879
48 Ga0307412_10000078 3300031911 Bacteria 94880
49 Ga0307409_100674496 3300031995 Bacteria 1030
50 Ga0395899_0009864 3300037312 Bacteria 7324
51 Ga0395900_0022754 3300037418 Bacteria 6414
52 Ga0395900_0059961 3300037418 Bacteria 3916
53 Ga0395900_0316055 3300037418 Bacteria 1543
54 Ga0395898_0008399 3300037466 Bacteria 10919
55 Ga0395905_0000498 3300037471 Bacteria 53933
56 Ga0395905_0030622 3300037471 Bacteria 5068
57 Ga0395905_0046317 3300037471 Bacteria 4077
58 Ga0395905_0049353 3300037471 Bacteria 3943
59 Ga0395901_0078544 3300038443 Bacteria 3446
60 Ga0395901_0342003 3300038443 Bacteria 1545
61 Ga0439466_0018611 3300041411 Bacteria 2491
62 Ga0495617_032983 3300046452 Bacteria 1739
63 Ga0495650_0011184 3300046471 Bacteria 4940
64 Ga0495605_0018506 3300046474 Bacteria 3733
65 Ga0495607_0002481 3300046501 Bacteria 14985
66 Ga0495606_0131578 3300046507 Bacteria 1487
67 Ga0495632_0002394 3300046519 Bacteria 14305
68 Ga0495632_0008585 3300046519 Bacteria 6246
69 Ga0495648_0000670 3300046524 Bacteria 36631
70 Ga0495642_0182307 3300046528 Bacteria 914
71 Ga0495625_0015121 3300046660 Bacteria 6125
72 Ga0495661_0059316 3300046665 Bacteria 2278
73 Ga0495660_0000346 3300046810 Bacteria 41018
74 Ga0495683_0000390 3300047323 Bacteria 35652
75 Ga0495681_0011226 3300047470 Bacteria 5354
76 Ga0495686_0168860 3300047472 Bacteria 1273
77 Ga0495626_0000035 3300048091 Bacteria 180770
78 Ga0496108_0640809 3300048911 Bacteria 924
79 Ga0496110_0588573 3300048913 Bacteria 1010
80 Ga0496116_0001646 3300048919 Bacteria 24574
81 Ga0496116_0051039 3300048919 Bacteria 2750
82 Ga0496116_0070386 3300048919 Bacteria 2220
83 Ga0496118_0021019 3300048921 Bacteria 5763
84 Ga0496119_0010930 3300048922 Bacteria 7581
85 Ga0496120_0002922 3300048923 Bacteria 16308
86 Ga0496121_0000359 3300048924 Bacteria 93676
87 Ga0496121_0001233 3300048924 Bacteria 44430
88 Ga0496121_0006517 3300048924 Bacteria 14436
89 Ga0496121_0014108 3300048924 Bacteria 8517
90 Ga0496122_0000115 3300048925 Bacteria 183402
91 Ga0496122_0010678 3300048925 Bacteria 9428
92 Ga0496123_0000129 3300048926 Bacteria 153816
93 Ga0496123_0013769 3300048926 Bacteria 6758
94 Ga0496124_0032608 3300048927 Bacteria 4596
95 Ga0496124_0139169 3300048927 Bacteria 1917
96 Ga0496125_0000023 3300048928 Bacteria 449042
97 Ga0496125_0012640 3300048928 Bacteria 8359
98 Ga0496126_0000254 3300048929 Bacteria 114937
99 Ga0496126_0000993 3300048929 Bacteria 48389
100 Ga0496126_0029896 3300048929 Bacteria 5171
101 Ga0495678_000720 3300049459 Bacteria 30033
102 Ga0501033_0014636 3300049570 Bacteria 5956
103 Ga0501033_0053068 3300049570 Bacteria 3003
104 Ga0501034_0000163 3300049571 Bacteria 125417
105 Ga0501034_0111891 3300049571 Bacteria 2721
106 Ga0501034_0287114 3300049571 Bacteria 1584
107 Ga0501043_0246561 3300049579 Bacteria 1377
108 Ga0501047_0059911 3300049581 Bacteria 3675
109 Ga0501047_0121713 3300049581 Bacteria 2491
110 Ga0501035_0025475 3300049822 Bacteria 5422
111 Ga0501044_0030380 3300049823 Bacteria 5695
112 Ga0501044_0032994 3300049823 Bacteria 5441
113 nmdc:mga00v17_3520_c1 3300050491 Bacteria 8092
114 nmdc:mga00v17_60_c1 3300050491 Bacteria 67387
115 nmdc:mga00v17_83454_c1 3300050491 Bacteria 1998
116 nmdc:mga0k408_21299_c1 3300050493 Bacteria 3639
117 nmdc:mga0k408_33947_c1 3300050493 Bacteria 2919
118 nmdc:mga0k408_52274_c1 3300050493 Bacteria 2368
119 nmdc:mga08y16_51234_c1 3300050511 Bacteria 4319
120 nmdc:mga0sz30_44511_c1 3300050516 Bacteria 1870
121 Ga0500578_0064484 3300053086 Bacteria 2336

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300006051 Ga0075364_10078773 Ga0075364_100787732 254
2 3300006195 Ga0075366_10184212 Ga0075366_101842122 254
3 3300028379 Ga0268266_10783091 Ga0268266_107830912 254
4 3300050491 nmdc:mga00v17_83454_c1 nmdc:mga00v17_83454_c1_244_1011 254
5 3300050493 nmdc:mga0k408_52274_c1 nmdc:mga0k408_52274_c1_1229_1996 254
6 iso_pu_bacteria 2599185292 2599903190 260
7 3300005467 Ga0070706_100012077 Ga0070706_1000120777 261
8 3300005468 Ga0070707_100072419 Ga0070707_1000724192 261
9 3300005545 Ga0070695_100245670 Ga0070695_1002456702 261
10 3300005549 Ga0070704_100195718 Ga0070704_1001957182 261
11 3300013297 Ga0157378_10167474 Ga0157378_101674742 261
12 3300025910 Ga0207684_10050989 Ga0207684_100509892 261
13 3300025912 Ga0207707_10221262 Ga0207707_102212622 261
14 3300025922 Ga0207646_10084688 Ga0207646_100846882 261
15 iso_pu_bacteria 2858950400 2858954468 261
16 iso_pu_bacteria 2941479691 2941484784 261
17 3300006186 Ga0075369_10076010 Ga0075369_100760102 262
18 3300006195 Ga0075366_10057655 Ga0075366_100576552 262
19 3300046507 Ga0495606_0131578 Ga0495606_0131578_283_1077 262
20 3300050493 nmdc:mga0k408_33947_c1 nmdc:mga0k408_33947_c1_1183_1974 262
21 3300050516 nmdc:mga0sz30_44511_c1 nmdc:mga0sz30_44511_c1_163_954 262
22 3300053086 Ga0500578_0064484 Ga0500578_0064484_403_1197 262
23 iso_pu_bacteria 2599185292 2599905100 262
24 iso_pu_bacteria 2643221569 2643860185 262
25 iso_pu_bacteria 2855730933 2855733368 262
26 iso_pu_bacteria 2855767633 2855772415 262
27 3300028800 Ga0265338_10000857 Ga0265338_1000085734 263
28 3300031247 Ga0265340_10033602 Ga0265340_100336024 263
29 3300048921 Ga0496118_0021019 Ga0496118_0021019_3274_4068 263
30 3300048924 Ga0496121_0000359 Ga0496121_0000359_38421_39215 263
31 3300048929 Ga0496126_0000254 Ga0496126_0000254_100249_101043 263
32 3300048929 Ga0496126_0000993 Ga0496126_0000993_43095_43889 263
33 iso_pu_bacteria 2599185319 2600044652 263
34 iso_pu_bacteria 2599185323 2600067861 263
35 3300005334 Ga0068869_100024101 Ga0068869_1000241012 264
36 3300005335 Ga0070666_10116655 Ga0070666_101166552 264
37 3300005367 Ga0070667_100542499 Ga0070667_1005424991 264
38 3300005444 Ga0070694_100125341 Ga0070694_1001253412 264
39 3300005617 Ga0068859_100016375 Ga0068859_1000163753 264
40 3300005843 Ga0068860_100204773 Ga0068860_1002047732 264
41 3300006844 Ga0075428_100001017 Ga0075428_10000101730 264
42 3300006871 Ga0075434_100629295 Ga0075434_1006292951 264
43 3300006931 Ga0097620_100016375 Ga0097620_1000163757 264
44 3300009094 Ga0111539_10006886 Ga0111539_1000688615 264
45 3300025942 Ga0207689_10032504 Ga0207689_100325045 264
46 3300027907 Ga0207428_10037645 Ga0207428_100376452 264
47 3300028381 Ga0268264_10175264 Ga0268264_101752642 264
48 3300046474 Ga0495605_0018506 Ga0495605_0018506_774_1571 264
49 3300046528 Ga0495642_0182307 Ga0495642_0182307_106_903 264
50 3300050511 nmdc:mga08y16_51234_c1 nmdc:mga08y16_51234_c1_1540_2337 264
51 iso_pu_bacteria 2501025502 2501084608 264
52 iso_pu_bacteria 2510917013 2511093040 264
53 iso_pu_bacteria 2643221603 2644031273 264
54 3300009094 Ga0111539_10041407 Ga0111539_100414072 265
55 3300013307 Ga0157372_10235780 Ga0157372_102357801 265
56 3300025919 Ga0207657_10154363 Ga0207657_101543632 265
57 3300031852 Ga0307410_10047130 Ga0307410_100471304 265
58 3300031995 Ga0307409_100674496 Ga0307409_1006744961 265
59 3300048911 Ga0496108_0640809 Ga0496108_0640809_21_821 265
60 3300048913 Ga0496110_0588573 Ga0496110_0588573_19_819 265
61 3300048919 Ga0496116_0051039 Ga0496116_0051039_334_1137 265
62 3300048922 Ga0496119_0010930 Ga0496119_0010930_5045_5848 265
63 3300048924 Ga0496121_0001233 Ga0496121_0001233_17655_18458 265
64 3300048925 Ga0496122_0010678 Ga0496122_0010678_1194_1997 265
65 3300048926 Ga0496123_0013769 Ga0496123_0013769_1338_2141 265
66 3300048927 Ga0496124_0032608 Ga0496124_0032608_1424_2227 265
67 3300048928 Ga0496125_0000023 Ga0496125_0000023_32574_33377 265
68 3300013102 Ga0157371_10052259 Ga0157371_100522592 266
69 3300031911 Ga0307412_10000078 Ga0307412_100000789 266
70 3300048923 Ga0496120_0002922 Ga0496120_0002922_8995_9804 266
71 3300014325 Ga0163163_10098805 Ga0163163_100988052 267
72 3300025913 Ga0207695_10051415 Ga0207695_100514153 267
73 3300028794 Ga0307515_10095527 Ga0307515_100955272 267
74 3300041411 Ga0439466_0018611 Ga0439466_0018611_1514_2317 267
75 3300046452 Ga0495617_032983 Ga0495617_032983_665_1474 267
76 3300046471 Ga0495650_0011184 Ga0495650_0011184_2091_2894 267
77 3300046501 Ga0495607_0002481 Ga0495607_0002481_10488_11297 267
78 3300046519 Ga0495632_0002394 Ga0495632_0002394_2810_3619 267
79 3300046519 Ga0495632_0008585 Ga0495632_0008585_708_1511 267
80 3300046524 Ga0495648_0000670 Ga0495648_0000670_24365_25168 267
81 3300046660 Ga0495625_0015121 Ga0495625_0015121_4534_5343 267
82 3300046665 Ga0495661_0059316 Ga0495661_0059316_424_1233 267
83 3300046810 Ga0495660_0000346 Ga0495660_0000346_24332_25135 267
84 3300047323 Ga0495683_0000390 Ga0495683_0000390_13809_14618 267
85 3300047470 Ga0495681_0011226 Ga0495681_0011226_1683_2492 267
86 3300047472 Ga0495686_0168860 Ga0495686_0168860_148_957 267
87 3300048091 Ga0495626_0000035 Ga0495626_0000035_38244_39053 267
88 3300049459 Ga0495678_000720 Ga0495678_000720_16770_17579 267
89 3300050491 nmdc:mga00v17_60_c1 nmdc:mga00v17_60_c1_10556_11362 267
90 iso_pu_bacteria 2855730933 2855735003 267
91 iso_pu_bacteria 2855767633 2855770787 267
92 iso_pu_bacteria 2881412998 2881417237 267
93 iso_pu_bacteria 2881412998 2881417249 267
94 iso_pu_bacteria 2881412998 2881418183 267
95 3300003759 Ga0055525_1000004 Ga0055525_1000004639 268
96 3300025230 Ga0209563_100013 Ga0209563_100013640 268
97 3300037312 Ga0395899_0009864 Ga0395899_0009864_4054_4866 268
98 3300037418 Ga0395900_0022754 Ga0395900_0022754_1987_2796 268
99 3300037418 Ga0395900_0059961 Ga0395900_0059961_2624_3436 268
100 3300037466 Ga0395898_0008399 Ga0395898_0008399_4498_5310 268
101 3300037471 Ga0395905_0030622 Ga0395905_0030622_2834_3646 268
102 3300037471 Ga0395905_0049353 Ga0395905_0049353_1962_2771 268
103 3300038443 Ga0395901_0078544 Ga0395901_0078544_992_1801 268
104 3300048919 Ga0496116_0001646 Ga0496116_0001646_12291_13100 268
105 3300048919 Ga0496116_0070386 Ga0496116_0070386_1363_2172 268
106 3300048924 Ga0496121_0014108 Ga0496121_0014108_7592_8401 268
107 3300048925 Ga0496122_0000115 Ga0496122_0000115_55853_56662 268
108 3300048926 Ga0496123_0000129 Ga0496123_0000129_19606_20415 268
109 3300048927 Ga0496124_0139169 Ga0496124_0139169_478_1287 268
110 3300048928 Ga0496125_0012640 Ga0496125_0012640_5335_6144 268
111 3300048929 Ga0496126_0029896 Ga0496126_0029896_3776_4585 268
112 3300049571 Ga0501034_0000163 Ga0501034_0000163_62010_62828 268
113 3300050491 nmdc:mga00v17_3520_c1 nmdc:mga00v17_3520_c1_127_945 268
114 3300006195 Ga0075366_10024262 Ga0075366_100242622 269
115 3300015683 Ga0183362_10002 Ga0183362_10002974 269
116 3300025921 Ga0207652_10391706 Ga0207652_103917061 269
117 3300031251 Ga0265327_10027534 Ga0265327_100275342 269
118 3300031251 Ga0265327_10136914 Ga0265327_101369142 269
119 3300048924 Ga0496121_0006517 Ga0496121_0006517_13172_14035 269
120 3300048924 Ga0496121_0006517 Ga0496121_0006517_7693_8517 269
121 3300049570 Ga0501033_0014636 Ga0501033_0014636_4621_5445 269
122 3300049570 Ga0501033_0053068 Ga0501033_0053068_367_1251 269
123 3300049571 Ga0501034_0000163 Ga0501034_0000163_65694_66521 269
124 3300049571 Ga0501034_0111891 Ga0501034_0111891_1420_2304 269
125 3300049571 Ga0501034_0287114 Ga0501034_0287114_526_1350 269
126 3300049579 Ga0501043_0246561 Ga0501043_0246561_31_915 269
127 3300049581 Ga0501047_0059911 Ga0501047_0059911_1154_1978 269
128 3300049581 Ga0501047_0121713 Ga0501047_0121713_1015_1899 269
129 3300049822 Ga0501035_0025475 Ga0501035_0025475_2793_3677 269
130 3300049823 Ga0501044_0030380 Ga0501044_0030380_3262_4146 269
131 3300049823 Ga0501044_0032994 Ga0501044_0032994_3159_3983 269
132 3300050493 nmdc:mga0k408_21299_c1 nmdc:mga0k408_21299_c1_891_1718 269
133 3300025294 Ga0209025_1000003 Ga0209025_10000031232 270
134 3300037418 Ga0395900_0316055 Ga0395900_0316055_542_1381 270
135 3300037466 Ga0395898_0008399 Ga0395898_0008399_8132_8971 270
136 3300037471 Ga0395905_0000498 Ga0395905_0000498_2182_3006 270
137 3300037471 Ga0395905_0046317 Ga0395905_0046317_1459_2298 270
138 3300038443 Ga0395901_0342003 Ga0395901_0342003_292_1131 270
139 iso_pu_bacteria 2855730933 2855731340 270
140 iso_pu_bacteria 2855767633 2855768046 270
141 3300003187 JGI25151J46595_10000112 JGI25151J46595_1000011271 271
142 3300013102 Ga0157371_10000196 Ga0157371_1000019664 271
143 3300025294 Ga0209025_1000064 Ga0209025_1000064254 271

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00753

Lactamase_B

Metallo-beta-lactamase superfamily

63

266

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
2br6-assembly1.cif.gz_A crystal structure of quorum-quenching n-acyl homoserine lactone lactonase 0.8651 7 246
3aj3-assembly1.cif.gz_A crystal structure of selenomethionine substituted 4-pyridoxolactonase from mesorhizobium loti 0.8485 9 244
6n9i-assembly2.cif.gz_B structure of the quorum quenching lactonase from parageobacillus caldoxylosilyticus - free 0.8408 9 252
2r2d-assembly1.cif.gz_A structure of a quorum-quenching lactonase (aiib) from agrobacterium tumefaciens 0.8326 9 246
7y7u-assembly1.cif.gz_B dimeric structure of a quorum-quenching metallo-hydrolase, lrsl 0.8305 8 245
ID Description Score Start End Superfamily
af_Q5VZ18_360_494_3.30.505.10 Alpha Beta;2-Layer Sandwich;SHC Adaptor Protein;SH2 domain 0.8928 182 196 3.30.505.10
af_O88582_31_158_3.30.505.10 Alpha Beta;2-Layer Sandwich;SHC Adaptor Protein;SH2 domain 0.8601 182 196 3.30.505.10
6n9qD00 Alpha Beta;4-Layer Sandwich;Metallo-beta-lactamase; Chain A;Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.8406 10 251 3.60.15.10
3aj0A00 Alpha Beta;4-Layer Sandwich;Metallo-beta-lactamase; Chain A;Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.8231 9 244 3.60.15.10
6c2cA00 Alpha Beta;4-Layer Sandwich;Metallo-beta-lactamase; Chain A;Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.8152 1 243 3.60.15.10
ID Description Score Start End GO Terms
AF-A0A848YAR3-F1-model_v4 N-acyl homoserine lactonase family protein 0.9803 8 271
AF-A0A4Q4CHF4-F1-model_v4 N-acyl homoserine lactonase family protein 0.9778 94 270
AF-A0A0M3CYE6-F1-model_v4 deleted 0.9772 7 271
AF-A0A846V8G8-F1-model_v4 deleted 0.977 5 271
AF-A0A258K6G5-F1-model_v4 MBL fold hydrolase 0.977 114 270 GO:0016787

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pLDDT pTM Quality
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Predicted Structure (AlphaFold2)

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