F188042

General Info

Members Datasets Scaffolds Average Seq Length
143 104 286 474

Family's Representative Sequence

Representative Sequence 3300005445|Ga0070708_100076959|Ga0070708_1000769592
Length 538
Sequence MEIIRSGRAVFSPEEPQTISATRFSVIRRGPQPANSPPSMDRTNHEVNPMSIPSRNGRARRSHRGRIDCLPLLCTACFLFVSGLSAQTPSRAGAPDSLHQLSSSVEALVRRVSPSVVQVLVTGYGPLEEGRGNTGLVIGRQRSIGSGVIIDPDGYIVTNAHVVSGAQRVQVIVSAPAADESPVQSIVRARGHTVEARIVGMAREIDLALLKTEAKGLPALPIGDYSKLRQGEVVFAFGSPEGLRNSVTMGVVSAVARQPEPDNPMVYIQTDAPINPGNSGGPLVNVSGELVGINSYILTESGGNQGLGFAIPSAIVTVACPQLRRYGHLHRGEIGTGVQTITPNLAAGLCLPRDWGVIVSDVLPGGPAEAAGMKVRDIILSINDKPIDSLPLLAFHLYTRSGGERVKLEILRETGKIFLDVPVIEHPHEMDRLADLVNPDKSLVGKLGVLGIEIDSKIAHMLPDLRVPSGIIVAARAADARSADVPLTTGDVIHAINGVAVASLEGLRSALSPLKPNSPVVLQIEREAKLMFVAFQVE

Samples

Sample ID Description Type Environment
1 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
2 3300000532 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNA_Illumina_Assembled Metagenome Rhizosphere
3 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
4 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
5 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
6 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
7 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
8 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
9 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
10 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
11 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
12 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
13 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
14 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
15 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
16 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
17 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
18 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
19 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
20 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
21 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
22 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
23 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
24 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
25 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
26 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
27 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
28 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
29 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
30 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
31 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
32 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
33 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
34 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
35 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
36 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
37 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
38 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
39 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
40 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
41 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
42 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
43 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
44 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
45 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300028016 Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 Metagenome Rhizosphere
67 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
70 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
71 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
72 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
73 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
74 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
75 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
76 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
77 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
78 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
79 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
80 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
81 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
82 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
83 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
84 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
85 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
86 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
87 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
88 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
89 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
90 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
91 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
92 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
93 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
94 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
95 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
96 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
97 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
98 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
99 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
100 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
101 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
102 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
103 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
104 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.3
Metatranscriptomes 0.7
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 97.9
Stem 0
Stem Tuber 0
Unclassified 5.59

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070708_100076959 3300005445 Bacteria 3014
2 CNAas_1000752 3300000532 Unclassified 3094
3 Ga0070676_10006106 3300005328 Bacteria 6432
4 Ga0070687_100022007 3300005343 Bacteria 3007
5 Ga0070675_100003191 3300005354 Bacteria 12418
6 Ga0070671_100040138 3300005355 Bacteria 3887
7 Ga0070673_100014289 3300005364 Bacteria 5522
8 Ga0070667_100232632 3300005367 Bacteria 1644
9 Ga0070709_10006357 3300005434 Bacteria 6434
10 Ga0070709_10012831 3300005434 Bacteria 4698
11 Ga0070709_10066132 3300005434 Bacteria 2317
12 Ga0070714_100029577 3300005435 Bacteria 4555
13 Ga0070713_100007930 3300005436 Bacteria 7497
14 Ga0070713_100020122 3300005436 Bacteria 5110
15 Ga0070713_100035095 3300005436 Bacteria 4035
16 Ga0070701_10028030 3300005438 Bacteria 2766
17 Ga0070711_100023061 3300005439 Bacteria 4043
18 Ga0070705_100003870 3300005440 Bacteria 7320
19 Ga0070700_100032171 3300005441 Bacteria 3150
20 Ga0070700_100044586 3300005441 Bacteria 2733
21 Ga0070708_100042207 3300005445 Bacteria 4003
22 Ga0070708_100138090 3300005445 Bacteria 2259
23 Ga0068867_100000994 3300005459 Bacteria 19345
24 Ga0068867_100050528 3300005459 Bacteria 3065
25 Ga0070706_100035197 3300005467 Bacteria 4624
26 Ga0070706_100050626 3300005467 Bacteria 3833
27 Ga0070707_100007524 3300005468 Bacteria 10117
28 Ga0070707_100121027 3300005468 Bacteria 2542
29 Ga0070698_100006339 3300005471 Bacteria 12848
30 Ga0070697_100025821 3300005536 Bacteria 4685
31 Ga0070695_100000940 3300005545 Bacteria 15770
32 Ga0070695_100002347 3300005545 Bacteria 10854
33 Ga0070696_100118386 3300005546 Unclassified 1915
34 Ga0070704_100002244 3300005549 Bacteria 10786
35 Ga0068863_100012102 3300005841 Bacteria 8334
36 Ga0070717_10001334 3300006028 Bacteria 16947
37 Ga0070717_10108287 3300006028 Bacteria 2367
38 Ga0070716_100001224 3300006173 Bacteria 11297
39 Ga0070712_100014734 3300006175 Bacteria 5021
40 Ga0075431_100019190 3300006847 Bacteria 6969
41 Ga0075433_10029079 3300006852 Unclassified 4706
42 Ga0075433_10030739 3300006852 Bacteria 4585
43 Ga0075433_10035233 3300006852 Bacteria 4303
44 Ga0075434_100004291 3300006871 Bacteria 12805
45 Ga0075435_100027935 3300007076 Bacteria 4419
46 Ga0099794_10012548 3300007265 Bacteria 3660
47 Ga0099794_10058726 3300007265 Bacteria 1865
48 Ga0099794_10073547 3300007265 Unclassified 1677
49 Ga0099795_10021779 3300007788 Bacteria 2108
50 Ga0105245_10018809 3300009098 Bacteria 6045
51 Ga0114129_10014368 3300009147 Bacteria 11286
52 Ga0114129_10047506 3300009147 Bacteria 6031
53 Ga0114129_10135391 3300009147 Unclassified 3381
54 Ga0105243_10000027 3300009148 Bacteria 191224
55 Ga0105243_10004929 3300009148 Bacteria 10459
56 Ga0105243_10007054 3300009148 Bacteria 8641
57 Ga0105242_10000056 3300009176 Bacteria 76052
58 Ga0105242_10041670 3300009176 Bacteria 3704
59 Ga0105248_10107400 3300009177 Unclassified 3147
60 Ga0105248_10136446 3300009177 Bacteria 2767
61 Ga0105248_10308483 3300009177 Bacteria 1782
62 Ga0099796_10008053 3300010159 Bacteria 2791
63 Ga0157372_10166829 3300013307 Bacteria 2547
64 Ga0163163_10033681 3300014325 Bacteria 4957
65 Ga0163163_10085729 3300014325 Bacteria 3158
66 Ga0157380_10080363 3300014326 Bacteria 2664
67 Ga0157379_10034302 3300014968 Unclassified 4524
68 Ga0213876_10023273 3300021384 Bacteria 3273
69 Ga0207642_10009029 3300025899 Bacteria 3450
70 Ga0207699_10006228 3300025906 Bacteria 5760
71 Ga0207645_10022105 3300025907 Bacteria 4142
72 Ga0207684_10042609 3300025910 Bacteria 3848
73 Ga0207693_10007350 3300025915 Bacteria 9060
74 Ga0207646_10000817 3300025922 Bacteria 40503
75 Ga0207646_10045667 3300025922 Bacteria 3932
76 Ga0207650_10037207 3300025925 Bacteria 3545
77 Ga0207659_10003652 3300025926 Bacteria 9269
78 Ga0207659_10034034 3300025926 Bacteria 3510
79 Ga0207659_10069768 3300025926 Bacteria 2561
80 Ga0207664_10008712 3300025929 Bacteria 7092
81 Ga0207686_10000008 3300025934 Bacteria 245575
82 Ga0207709_10000025 3300025935 Bacteria 364795
83 Ga0207709_10008838 3300025935 Bacteria 5558
84 Ga0207709_10009077 3300025935 Bacteria 5484
85 Ga0207669_10036892 3300025937 Bacteria 2798
86 Ga0207665_10002994 3300025939 Bacteria 11342
87 Ga0207711_10097298 3300025941 Bacteria 2599
88 Ga0207689_10002172 3300025942 Bacteria 18450
89 Ga0207658_10111908 3300025986 Bacteria 2160
90 Ga0207708_10018068 3300026075 Bacteria 5306
91 Ga0207708_10050918 3300026075 Bacteria 3152
92 Ga0207648_10000358 3300026089 Bacteria 50234
93 Ga0207648_10069489 3300026089 Bacteria 3069
94 Ga0207675_100092467 3300026118 Bacteria 2845
95 Ga0207675_100140736 3300026118 Bacteria 2292
96 Ga0207683_10031980 3300026121 Bacteria 4569
97 Ga0207683_10089078 3300026121 Bacteria 2746
98 Ga0209588_1019292 3300027671 Bacteria 2128
99 Ga0265354_1000004 3300028016 Bacteria 35979
100 Ga0268265_10021638 3300028380 Bacteria 4508
101 Ga0268264_10060591 3300028381 Bacteria 3172
102 Ga0265338_10013884 3300028800 Bacteria 9042
103 Ga0265760_10000042 3300031090 Bacteria 38544
104 Ga0265339_10006389 3300031249 Bacteria 7746
105 Ga0307513_10152382 3300031456 Unclassified 2218
106 Ga0265314_10030046 3300031711 Bacteria 4027
107 Ga0265342_10002716 3300031712 Bacteria 15061
108 Ga0373953_0004648 3300035117 Bacteria 4392
109 Ga0373954_0001423 3300035118 Bacteria 9693
110 Ga0373943_0053853 3300035170 Bacteria 1988
111 Ga0373927_0000862 3300035695 Bacteria 23125
112 Ga0373947_0005873 3300035725 Bacteria 7150
113 Ga0373937_0001290 3300036401 Bacteria 20976
114 Ga0436365_0111621 3300039437 Bacteria 4851
115 Ga0495592_0045731 3300046454 Bacteria 3265
116 Ga0495580_0042679 3300046472 Bacteria 3230
117 Ga0495608_0035931 3300046511 Bacteria 3337
118 Ga0495628_0010822 3300046516 Bacteria 7724
119 Ga0495587_0000811 3300046536 Bacteria 20846
120 Ga0495645_0002911 3300046543 Bacteria 11623
121 Ga0495645_0003974 3300046543 Bacteria 10082
122 Ga0495634_0063795 3300046642 Bacteria 2444
123 Ga0495623_0007994 3300046679 Bacteria 6871
124 Ga0495604_0001323 3300047317 Bacteria 20225
125 Ga0495674_0074391 3300047319 Bacteria 2926
126 Ga0495675_0040626 3300047444 Bacteria 2964
127 Ga0495684_0017838 3300047471 Bacteria 5468
128 Ga0495602_0002174 3300048088 Bacteria 19788
129 Ga0501042_0111596 3300049578 Bacteria 1969
130 Ga0501083_0109127 3300049744 Bacteria 1820
131 nmdc:mga05p37_238714_c1 3300050507 Bacteria 2187
132 nmdc:mga05p37_5622_c1 3300050507 Bacteria 14732
133 nmdc:mga05p37_74774_c1 3300050507 Bacteria 4170
134 nmdc:mga06r32_50520_c1 3300050510 Bacteria 3978
135 nmdc:mga0n895_50685_c1 3300050512 Bacteria 4070
136 nmdc:mga0rr50_48781_c1 3300050513 Bacteria 3132
137 nmdc:mga0a205_13244_c1 3300050515 Bacteria 7669
138 nmdc:mga0a205_34405_c1 3300050515 Bacteria 4861
139 nmdc:mga0a205_87035_c1 3300050515 Bacteria 3018
140 Ga0495601_0046301 3300053077 Bacteria 2738
141 Ga0495595_0010766 3300053084 Bacteria 3811
142 Ga0495619_0019389 3300053085 Bacteria 4323
143 Ga0495619_0146112 3300053085 Bacteria 1630
144 Ga0070708_100076959
145 CNAas_1000752
146 Ga0070676_10006106
147 Ga0070687_100022007
148 Ga0070675_100003191
149 Ga0070671_100040138
150 Ga0070673_100014289
151 Ga0070667_100232632
152 Ga0070709_10006357
153 Ga0070709_10012831
154 Ga0070709_10066132
155 Ga0070714_100029577
156 Ga0070713_100007930
157 Ga0070713_100020122
158 Ga0070713_100035095
159 Ga0070701_10028030
160 Ga0070711_100023061
161 Ga0070705_100003870
162 Ga0070700_100032171
163 Ga0070700_100044586
164 Ga0070708_100042207
165 Ga0070708_100138090
166 Ga0068867_100000994
167 Ga0068867_100050528
168 Ga0070706_100035197
169 Ga0070706_100050626
170 Ga0070707_100007524
171 Ga0070707_100121027
172 Ga0070698_100006339
173 Ga0070697_100025821
174 Ga0070695_100000940
175 Ga0070695_100002347
176 Ga0070696_100118386
177 Ga0070704_100002244
178 Ga0068863_100012102
179 Ga0070717_10001334
180 Ga0070717_10108287
181 Ga0070716_100001224
182 Ga0070712_100014734
183 Ga0075431_100019190
184 Ga0075433_10029079
185 Ga0075433_10030739
186 Ga0075433_10035233
187 Ga0075434_100004291
188 Ga0075435_100027935
189 Ga0099794_10012548
190 Ga0099794_10058726
191 Ga0099794_10073547
192 Ga0099795_10021779
193 Ga0105245_10018809
194 Ga0114129_10014368
195 Ga0114129_10047506
196 Ga0114129_10135391
197 Ga0105243_10000027
198 Ga0105243_10004929
199 Ga0105243_10007054
200 Ga0105242_10000056
201 Ga0105242_10041670
202 Ga0105248_10107400
203 Ga0105248_10136446
204 Ga0105248_10308483
205 Ga0099796_10008053
206 Ga0157372_10166829
207 Ga0163163_10033681
208 Ga0163163_10085729
209 Ga0157380_10080363
210 Ga0157379_10034302
211 Ga0213876_10023273
212 Ga0207642_10009029
213 Ga0207699_10006228
214 Ga0207645_10022105
215 Ga0207684_10042609
216 Ga0207693_10007350
217 Ga0207646_10000817
218 Ga0207646_10045667
219 Ga0207650_10037207
220 Ga0207659_10003652
221 Ga0207659_10034034
222 Ga0207659_10069768
223 Ga0207664_10008712
224 Ga0207686_10000008
225 Ga0207709_10000025
226 Ga0207709_10008838
227 Ga0207709_10009077
228 Ga0207669_10036892
229 Ga0207665_10002994
230 Ga0207711_10097298
231 Ga0207689_10002172
232 Ga0207658_10111908
233 Ga0207708_10018068
234 Ga0207708_10050918
235 Ga0207648_10000358
236 Ga0207648_10069489
237 Ga0207675_100092467
238 Ga0207675_100140736
239 Ga0207683_10031980
240 Ga0207683_10089078
241 Ga0209588_1019292
242 Ga0265354_1000004
243 Ga0268265_10021638
244 Ga0268264_10060591
245 Ga0265338_10013884
246 Ga0265760_10000042
247 Ga0265339_10006389
248 Ga0307513_10152382
249 Ga0265314_10030046
250 Ga0265342_10002716
251 Ga0373953_0004648
252 Ga0373954_0001423
253 Ga0373943_0053853
254 Ga0373927_0000862
255 Ga0373947_0005873
256 Ga0373937_0001290
257 Ga0436365_0111621
258 Ga0495592_0045731
259 Ga0495580_0042679
260 Ga0495608_0035931
261 Ga0495628_0010822
262 Ga0495587_0000811
263 Ga0495645_0002911
264 Ga0495645_0003974
265 Ga0495634_0063795
266 Ga0495623_0007994
267 Ga0495604_0001323
268 Ga0495674_0074391
269 Ga0495675_0040626
270 Ga0495684_0017838
271 Ga0495602_0002174
272 Ga0501042_0111596
273 Ga0501083_0109127
274 nmdc:mga05p37_238714_c1
275 nmdc:mga05p37_5622_c1
276 nmdc:mga05p37_74774_c1
277 nmdc:mga06r32_50520_c1
278 nmdc:mga0n895_50685_c1
279 nmdc:mga0rr50_48781_c1
280 nmdc:mga0a205_13244_c1
281 nmdc:mga0a205_34405_c1
282 nmdc:mga0a205_87035_c1
283 Ga0495601_0046301
284 Ga0495595_0010766
285 Ga0495619_0019389
286 Ga0495619_0146112

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13365

Trypsin_2

Trypsin-like peptidase domain

145

293

0.96

PF17820

PDZ_6

PDZ domain

358

412

0.96

PF13180

PDZ_2

PDZ domain

332

423

0.88

PF00595

PDZ

PDZ domain

325

411

0.84

PF00089

Trypsin

Trypsin

128

318

0.8

PF13180

PDZ_2

PDZ domain

448

537

0.77

Structural Annotation

Top 5 Hits

ID Description Score Start End
3i18-assembly1.cif.gz_A crystal structure of the pdz domain of the sdrc-like protein (lmo2051) from listeria monocytogenes, northeast structural genomics consortium target lmr166b 0.9352 282 350
2p3w-assembly2.cif.gz_B-3 crystal structure of the htra3 pdz domain bound to a phage-derived ligand (fgrwv) 0.8993 256 349
7xfu-assembly1.cif.gz_B mucp pdz2 domain with peptide gpavla 0.8991 284 350
2kl1-assembly1.cif.gz_A solution structure of gtr34c from geobacillus thermodenitrificans. northeast structural genomics consortium target gtr34c 0.8887 282 348
2zpm-assembly1.cif.gz_A crystal structure analysis of pdz domain b 0.8845 284 348
ID Description Score Start End Superfamily
2z9iA03 Mainly Beta;Roll;Pdz3 Domain;PDZ domain 0.9142 257 350 2.30.42.10
af_Q58381_199_269_2.30.42.10 Mainly Beta;Roll;Pdz3 Domain;PDZ domain 0.9102 411 463 2.30.42.10
af_O53340_130_222_2.30.42.10 Mainly Beta;Roll;Pdz3 Domain;PDZ domain 0.9075 281 351 2.30.42.10
af_P0C0V0_287_387_2.30.42.10 Mainly Beta;Roll;Pdz3 Domain;PDZ domain 0.9057 257 355 2.30.42.10
2p3wB01 Mainly Beta;Roll;Pdz3 Domain;PDZ domain 0.8961 256 353 2.30.42.10
ID Description Score Start End GO Terms
AF-M5UH79-F1-model_v4 Aminopeptidase 0.9521 258 352 GO:0004177
GO:0006508
GO:0008235
AF-A0A3N5GC34-F1-model_v4 PDZ domain-containing protein 0.9397 259 350 GO:0004676
GO:0004677
GO:0004679
GO:0004711
GO:0005524
GO:0016020
GO:0035175
GO:0035402
GO:0035403
GO:0035979
GO:0044022
GO:0044023
GO:0044024
GO:0044025
GO:0072354
GO:0072371
GO:0072518
GO:0140823
GO:0140855
GO:0140857
GO:1990244
AF-A0A3L7VFX7-F1-model_v4 PDZ domain-containing protein 0.9391 257 353
AF-A0A2N6BWQ1-F1-model_v4 deleted 0.9385 258 352
AF-A0A661R393-F1-model_v4 Peptidase 0.9369 259 348 GO:0004252
GO:0006508

Map