F187477

General Info

Members Datasets Scaffolds Average Seq Length
143 120 286 306

Family's Representative Sequence

Representative Sequence 3300003316|rootH1_10025167|rootH1_100251673
Length 328
Sequence MTDDTARHSVQDIWLSIPPEELDGLPEGPDYLFWDGGPDGTQPYPGDPARCAFYVVPYMKRQPVKIGPLAGMPNLKVVQTLTAGVDDIPARLDLLPPGVQLCNARGVHETSTAELALTLTLASLRGIPGFVRAQDRQEWQSGFHPALADRTVLILGYGAIGAAIEDRLAPFELARVVRVARAERTTERGPVHSIGELPQLLPLADVVIVVTPLTESTHKLVNEPFLARMKDGALLVNVARGAVVDTKALLAELESGRLTAALDVTDPEPLPPGHPLWSAPGVLISPHVGGPSSAFLPRAKRLLVEQLVRYMNQEPLRNVILTTGAAGE

Samples

Sample ID Description Type Environment
1 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
2 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
5 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
6 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
7 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
8 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
9 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
10 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
11 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
12 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
13 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
14 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
15 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
16 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
17 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
18 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
19 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
20 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
21 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
22 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
23 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
24 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
25 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
26 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
27 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
28 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
29 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
30 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
31 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
32 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
33 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
34 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
35 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
36 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
51 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
52 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
53 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
54 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
55 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
56 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
57 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
58 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
59 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
60 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
61 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
62 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
63 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
64 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
65 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
66 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
67 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
68 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
69 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
70 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
71 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
72 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
73 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
74 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
75 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
76 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
77 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
78 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
79 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
80 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
81 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
82 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
83 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
84 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
85 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
86 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
87 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
88 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
89 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
90 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
91 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
92 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
93 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
94 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
95 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
96 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
97 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
98 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
99 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
100 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
101 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
102 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
103 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
104 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
105 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
106 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
107 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
108 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
109 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
110 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
111 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
112 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
113 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
114 2811994880 Cellulomonas sp. SLBN-39 Isolate Unclassified
115 2811994882 Terrabacter sp. SLBN-196 Isolate Unclassified
116 2818991462 Terrabacter sp. 3264 Isolate Rhizosphere
117 2818991469 Terrabacter lapilli 3265 Isolate Rhizosphere
118 2837268691 Jiangella endophytica KE2-3 Isolate Rhizosphere
119 2855386786 Nocardioides ferulae EGI 63112 Isolate Unclassified
120 2954002825 Streptomyces turgidiscabies W2I16 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 94.41
Metatranscriptomes 0.7
Isolates 4.9

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 15.38
Nodule 0
Rhizoplane 2.8
Rhizosphere 69.93
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10025167 3300003316 Bacteria 5727
2 rootH1_10151637 3300003323 Bacteria 2848
3 Ga0070683_100169070 3300005329 Bacteria 2075
4 Ga0070670_100159901 3300005331 Bacteria 1952
5 Ga0070691_10074530 3300005341 Bacteria 1651
6 Ga0070687_100082659 3300005343 Bacteria 1757
7 Ga0070692_10066929 3300005345 Bacteria 1905
8 Ga0070668_100156240 3300005347 Bacteria 1848
9 Ga0070674_100012145 3300005356 Bacteria 5279
10 Ga0070659_100019867 3300005366 Bacteria 5099
11 Ga0070700_100011000 3300005441 Bacteria 5002
12 Ga0068867_100013043 3300005459 Bacteria 5881
13 Ga0070685_10131369 3300005466 Bacteria 1566
14 Ga0070684_100311446 3300005535 Bacteria 1445
15 Ga0070686_100214816 3300005544 Bacteria 1387
16 Ga0068852_100104267 3300005616 Bacteria 2566
17 Ga0068859_100172416 3300005617 Bacteria 2245
18 Ga0068870_10041639 3300005840 Bacteria 2387
19 Ga0075365_10009613 3300006038 Bacteria 5575
20 Ga0075365_10010887 3300006038 Bacteria 5324
21 Ga0075365_10209190 3300006038 Bacteria 1367
22 Ga0075363_100000616 3300006048 Bacteria 11772
23 Ga0075364_10000900 3300006051 Bacteria 15715
24 Ga0075364_10002933 3300006051 Bacteria 9612
25 Ga0075364_10081238 3300006051 Bacteria 2143
26 Ga0075367_10188075 3300006178 Bacteria 1288
27 Ga0075370_10021949 3300006353 Bacteria 3500
28 Ga0075428_100316342 3300006844 Bacteria 1678
29 Ga0068865_100090248 3300006881 Bacteria 2221
30 Ga0097620_100172420 3300006931 Bacteria 2245
31 Ga0111539_10015445 3300009094 Bacteria 9497
32 Ga0105245_10065110 3300009098 Bacteria 3296
33 Ga0105243_10077160 3300009148 Bacteria 2709
34 Ga0105248_10018268 3300009177 Bacteria 7743
35 Ga0105249_10248108 3300009553 Bacteria 1764
36 Ga0157372_10254828 3300013307 Bacteria 2037
37 Ga0157380_10079640 3300014326 Bacteria 2676
38 Ga0157377_10049293 3300014745 Bacteria 2367
39 Ga0206353_11104093 3300020082 Bacteria 2669
40 Ga0207642_10027708 3300025899 Bacteria 2322
41 Ga0207643_10005139 3300025908 Bacteria 7001
42 Ga0207662_10142642 3300025918 Bacteria 1518
43 Ga0207681_10154750 3300025923 Bacteria 1722
44 Ga0207687_10049344 3300025927 Bacteria 2927
45 Ga0207709_10123118 3300025935 Bacteria 1755
46 Ga0207669_10053658 3300025937 Bacteria 2430
47 Ga0207704_10062979 3300025938 Bacteria 2309
48 Ga0207691_10001309 3300025940 Bacteria 24825
49 Ga0207661_10179347 3300025944 Bacteria 1849
50 Ga0207708_10021700 3300026075 Bacteria 4845
51 Ga0207702_10495522 3300026078 Bacteria 1190
52 Ga0207648_10001262 3300026089 Bacteria 28251
53 Ga0207675_100002583 3300026118 Bacteria 17935
54 Ga0207428_10008333 3300027907 Bacteria 9367
55 Ga0307515_10021927 3300028794 Bacteria 11294
56 Ga0265340_10002467 3300031247 Bacteria 10518
57 Ga0265340_10018112 3300031247 Bacteria 3636
58 Ga0307513_10001532 3300031456 Bacteria 33084
59 Ga0307513_10061225 3300031456 Bacteria 3986
60 Ga0307514_10003130 3300031649 Bacteria 16263
61 Ga0307514_10055762 3300031649 Bacteria 3036
62 Ga0307516_10019338 3300031730 Bacteria 7054
63 Ga0307410_10098936 3300031852 Bacteria 2087
64 Ga0307407_10135143 3300031903 Bacteria 1583
65 Ga0307409_100041927 3300031995 Bacteria 3423
66 Ga0307416_100096217 3300032002 Bacteria 2560
67 Ga0307411_10025645 3300032005 Bacteria 3536
68 Ga0307510_10023833 3300033180 Bacteria 7086
69 Ga0395900_0307303 3300037418 Bacteria 1570
70 Ga0395905_0223559 3300037471 Bacteria 1762
71 Ga0395901_0122001 3300038443 Bacteria 2739
72 Ga0395901_0744828 3300038443 Bacteria 973
73 Ga0451841_0327726 3300041498 Bacteria 2186
74 Ga0451843_0569031 3300041509 Bacteria 1629
75 Ga0466969_0031263 3300044656 Bacteria 2711
76 Ga0466965_0011743 3300044683 Bacteria 4110
77 Ga0466966_0042381 3300044684 Bacteria 2921
78 Ga0466961_0046303 3300044693 Bacteria 2782
79 Ga0466961_0105408 3300044693 Bacteria 1775
80 Ga0466963_0001947 3300044694 Bacteria 11320
81 Ga0466971_0129131 3300044719 Bacteria 1172
82 Ga0466968_0043844 3300044735 Bacteria 1895
83 Ga0466970_0131247 3300044765 Bacteria 1376
84 Ga0466970_0156842 3300044765 Bacteria 1258
85 Ga0466960_0005994 3300044901 Bacteria 4853
86 Ga0466960_0021403 3300044901 Bacteria 2878
87 Ga0466960_0027695 3300044901 Bacteria 2588
88 Ga0466960_0124180 3300044901 Bacteria 1355
89 Ga0466959_0073325 3300045049 Bacteria 2476
90 Ga0466958_0024853 3300045836 Bacteria 3527
91 Ga0466967_0129690 3300045976 Bacteria 2339
92 Ga0466967_0347043 3300045976 Bacteria 1436
93 Ga0466967_0524508 3300045976 Bacteria 1164
94 Ga0495664_0217617 3300046477 Bacteria 1156
95 Ga0496109_0027833 3300048912 Bacteria 5052
96 Ga0496110_0090367 3300048913 Bacteria 2738
97 Ga0496113_0040126 3300048916 Bacteria 3448
98 Ga0496114_0157094 3300048917 Bacteria 1975
99 Ga0496122_0084851 3300048925 Bacteria 2188
100 Ga0496123_0158728 3300048926 Bacteria 1209
101 Ga0496124_0041125 3300048927 Bacteria 3993
102 Ga0501031_0042032 3300049568 Bacteria 2984
103 Ga0501032_0024949 3300049569 Bacteria 4125
104 Ga0501033_0021770 3300049570 Bacteria 4838
105 Ga0501034_0012765 3300049571 Bacteria 8663
106 Ga0501036_0035015 3300049572 Bacteria 4247
107 Ga0501037_0016189 3300049573 Bacteria 5487
108 Ga0501038_0023270 3300049574 Bacteria 5541
109 Ga0501040_0065712 3300049576 Bacteria 2499
110 Ga0501042_0009668 3300049578 Bacteria 6438
111 Ga0501043_0019038 3300049579 Bacteria 5390
112 Ga0501047_0008187 3300049581 Bacteria 9876
113 Ga0501047_0066089 3300049581 Bacteria 3486
114 Ga0501047_0124386 3300049581 Bacteria 2459
115 Ga0501048_0004135 3300049582 Bacteria 11059
116 Ga0501067_0015610 3300049583 Bacteria 4204
117 Ga0501068_0060448 3300049584 Bacteria 2301
118 Ga0501068_0110400 3300049584 Bacteria 1710
119 Ga0501071_0198446 3300049587 Bacteria 1507
120 Ga0501035_0004667 3300049822 Bacteria 13006
121 Ga0501035_0108548 3300049822 Bacteria 2433
122 Ga0501044_0007499 3300049823 Bacteria 11999
123 nmdc:mga03n38_3137_c1 3300050490 Bacteria 5258
124 nmdc:mga00v17_189788_c1 3300050491 Bacteria 1327
125 nmdc:mga00v17_230944_c1 3300050491 Bacteria 1199
126 nmdc:mga00v17_4198_c1 3300050491 Bacteria 7474
127 nmdc:mga0yw44_109721_c1 3300050492 Bacteria 1767
128 nmdc:mga0yw44_127053_c1 3300050492 Bacteria 1647
129 nmdc:mga06z11_89022_c1 3300050494 Bacteria 1672
130 nmdc:mga07m45_43109_c1 3300050496 Bacteria 2530
131 nmdc:mga08y16_12607_c1 3300050511 Bacteria 8892
132 Ga0500644_0000053 3300053088 Bacteria 69275
133 Ga0500559_0028538 3300053136 Bacteria 2384
134 Ga0500604_0123518 3300053151 Bacteria 867
135 Ga0500616_0000613 3300053153 Bacteria 43249
136 Ga0500616_0000767 3300053153 Bacteria 36968
137 2812362141 2811994880 Bacteria 4147780
138 2812374033 2811994882 Bacteria 4688362
139 2819691111 2818991462 Bacteria 4320267
140 2819728998 2818991469 Bacteria 4644110
141 2837271447 2837268691 Bacteria 7850704
142 2855389887 2855386786 Bacteria 4752232
143 2954005684 2954002825 Bacteria 9173742
144 rootH1_10025167
145 rootH1_10151637
146 Ga0070683_100169070
147 Ga0070670_100159901
148 Ga0070691_10074530
149 Ga0070687_100082659
150 Ga0070692_10066929
151 Ga0070668_100156240
152 Ga0070674_100012145
153 Ga0070659_100019867
154 Ga0070700_100011000
155 Ga0068867_100013043
156 Ga0070685_10131369
157 Ga0070684_100311446
158 Ga0070686_100214816
159 Ga0068852_100104267
160 Ga0068859_100172416
161 Ga0068870_10041639
162 Ga0075365_10009613
163 Ga0075365_10010887
164 Ga0075365_10209190
165 Ga0075363_100000616
166 Ga0075364_10000900
167 Ga0075364_10002933
168 Ga0075364_10081238
169 Ga0075367_10188075
170 Ga0075370_10021949
171 Ga0075428_100316342
172 Ga0068865_100090248
173 Ga0097620_100172420
174 Ga0111539_10015445
175 Ga0105245_10065110
176 Ga0105243_10077160
177 Ga0105248_10018268
178 Ga0105249_10248108
179 Ga0157372_10254828
180 Ga0157380_10079640
181 Ga0157377_10049293
182 Ga0206353_11104093
183 Ga0207642_10027708
184 Ga0207643_10005139
185 Ga0207662_10142642
186 Ga0207681_10154750
187 Ga0207687_10049344
188 Ga0207709_10123118
189 Ga0207669_10053658
190 Ga0207704_10062979
191 Ga0207691_10001309
192 Ga0207661_10179347
193 Ga0207708_10021700
194 Ga0207702_10495522
195 Ga0207648_10001262
196 Ga0207675_100002583
197 Ga0207428_10008333
198 Ga0307515_10021927
199 Ga0265340_10002467
200 Ga0265340_10018112
201 Ga0307513_10001532
202 Ga0307513_10061225
203 Ga0307514_10003130
204 Ga0307514_10055762
205 Ga0307516_10019338
206 Ga0307410_10098936
207 Ga0307407_10135143
208 Ga0307409_100041927
209 Ga0307416_100096217
210 Ga0307411_10025645
211 Ga0307510_10023833
212 Ga0395900_0307303
213 Ga0395905_0223559
214 Ga0395901_0122001
215 Ga0395901_0744828
216 Ga0451841_0327726
217 Ga0451843_0569031
218 Ga0466969_0031263
219 Ga0466965_0011743
220 Ga0466966_0042381
221 Ga0466961_0046303
222 Ga0466961_0105408
223 Ga0466963_0001947
224 Ga0466971_0129131
225 Ga0466968_0043844
226 Ga0466970_0131247
227 Ga0466970_0156842
228 Ga0466960_0005994
229 Ga0466960_0021403
230 Ga0466960_0027695
231 Ga0466960_0124180
232 Ga0466959_0073325
233 Ga0466958_0024853
234 Ga0466967_0129690
235 Ga0466967_0347043
236 Ga0466967_0524508
237 Ga0495664_0217617
238 Ga0496109_0027833
239 Ga0496110_0090367
240 Ga0496113_0040126
241 Ga0496114_0157094
242 Ga0496122_0084851
243 Ga0496123_0158728
244 Ga0496124_0041125
245 Ga0501031_0042032
246 Ga0501032_0024949
247 Ga0501033_0021770
248 Ga0501034_0012765
249 Ga0501036_0035015
250 Ga0501037_0016189
251 Ga0501038_0023270
252 Ga0501040_0065712
253 Ga0501042_0009668
254 Ga0501043_0019038
255 Ga0501047_0008187
256 Ga0501047_0066089
257 Ga0501047_0124386
258 Ga0501048_0004135
259 Ga0501067_0015610
260 Ga0501068_0060448
261 Ga0501068_0110400
262 Ga0501071_0198446
263 Ga0501035_0004667
264 Ga0501035_0108548
265 Ga0501044_0007499
266 nmdc:mga03n38_3137_c1
267 nmdc:mga00v17_189788_c1
268 nmdc:mga00v17_230944_c1
269 nmdc:mga00v17_4198_c1
270 nmdc:mga0yw44_109721_c1
271 nmdc:mga0yw44_127053_c1
272 nmdc:mga06z11_89022_c1
273 nmdc:mga07m45_43109_c1
274 nmdc:mga08y16_12607_c1
275 Ga0500644_0000053
276 Ga0500559_0028538
277 Ga0500604_0123518
278 Ga0500616_0000613
279 Ga0500616_0000767
280 2812362141
281 2812374033
282 2819691111
283 2819728998
284 2837271447
285 2855389887
286 2954005684

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00389

2-Hacid_dh

D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

52

321

0.95

PF02826

2-Hacid_dh_C

D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

117

289

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
5unn-assembly1.cif.gz_B crystal structure of nadph-dependent glyoxylate/hydroxypyruvate reductase smc02828 (smghra) from sinorhizobium meliloti in apo form 0.895 107 293
6rj6-assembly1.cif.gz_A crystal structure of phgdh in complex with bi-4924 0.8733 111 306
7cvp-assembly1.cif.gz_B the crystal structure of human phgdh from biortus. 0.8712 103 306
6rj6-assembly1.cif.gz_B crystal structure of phgdh in complex with bi-4924 0.8639 106 310
5vg6-assembly5.cif.gz_G crystal structure of d-isomer specific 2-hydroxyacid dehydrogenase from xanthobacter autotrophicus py2 in complex with nadph and mes. 0.8626 83 321
ID Description Score Start End Superfamily
5mhaA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9352 110 290 3.40.50.720
af_Q9VII9_150_293_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9285 147 287 3.40.50.720
af_Q9VII9_107_293_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.927 109 287 3.40.50.720
af_Q2G281_98_281_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9253 112 292 3.40.50.720
2fssD02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9175 111 290 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A1D8SVB0-F1-model_v4 deleted 0.9837 13 325
AF-A0A7W3WPV5-F1-model_v4 2-hydroxyacid dehydrogenase 0.9836 51 326 GO:0016616
GO:0051287
AF-A0A2A3GXY5-F1-model_v4 Dihydrofolate reductase 0.9827 10 325 GO:0016616
GO:0051287
AF-A0A2B8B5I4-F1-model_v4 Dihydrofolate reductase 0.9824 10 324 GO:0005829
GO:0016618
GO:0030267
GO:0051287
AF-A0A7J0CAR5-F1-model_v4 Dehydrogenase 0.9819 13 324 GO:0005829
GO:0016618
GO:0030267
GO:0051287

Map