F187054

General Info

Members Datasets Scaffolds Average Seq Length
142 120 138 336

Family's Representative Sequence

Representative Sequence 3300050492|nmdc:mga0yw44_903_c2|nmdc:mga0yw44_903_c2_3957_5075
Length 372
Sequence VWLYRGARACNGRKNIEKTAEQNDTYHLKVKNRRNFSMTIRVAINGYGRIGRNILRAHYESKKHKDIQIVAINDLGDVNTNAHLTRYDTTHGKFPGTVEVEGQDMIVNGDRIRVVAERDPKKLPWGELNVDVVFECTGFFTSKEKASMHLEAGAKKVIISAPATGVDATIVYGVNQNILKATDTVISNASCTTNCLAPLVMPLHEAIGIEHGLMNTIHSYTNDQALLDVSHADLRRARAAAHSMIPTKTGAAAAVGLIFPELDGKLDGFSVRVPTINVSVVDFTFNAKRETSVDEINSLMKKAAAGPLKGVLEINEEPLVSVDFNHNPASSIFDMSYTKVMGNLVKIMAWYDNEWGFSNRMLDTTVALMKAK

Samples

Sample ID Description Type Environment
1 2643221654 Rhizobacter sp. Root404 Isolate Unclassified
2 2687453129 Halotalea alkalilenta IHB B 13600 Isolate Unclassified
3 2857542790 Achromobacter sp. R-72367 Isolate Unclassified
4 2956897341 Ectobacillus funiculus W18-2 Isolate Rhizosphere
5 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
6 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
7 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
8 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
9 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
10 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
11 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
12 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
13 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
14 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
15 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
16 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
17 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
18 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
19 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
20 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
21 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
22 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
23 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
24 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
25 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
26 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
27 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
28 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
29 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
30 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
31 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
32 3300006194 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 Metagenome Rhizosphere
33 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
34 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
35 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
36 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
37 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
38 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
39 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
40 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
41 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
42 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
43 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
44 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
58 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
62 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
63 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
64 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
65 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
66 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
67 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
68 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
69 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
70 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
71 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
72 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
73 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
74 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
75 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
76 3300042127 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030F_E14_070516_91 Metagenome Rhizosphere
77 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
78 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
79 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
80 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
81 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
82 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
83 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
84 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
85 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
86 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
87 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
88 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
89 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
90 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
91 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
92 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
93 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
94 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
95 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
96 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
97 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
98 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
99 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
100 3300049528 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_A_2_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
101 3300049532 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G5_B_2_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
102 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
103 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
104 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
105 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
106 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
107 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
108 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
109 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
110 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
111 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
112 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
113 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
114 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
115 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
116 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
117 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
118 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
119 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
120 3300059491 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 12R_AW_T1_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 95.07
Metatranscriptomes 2.11
Isolates 2.82

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 19.72
Nodule 0
Rhizoplane 5.63
Rhizosphere 66.2
Stem 0
Stem Tuber 0
Unclassified 8.45

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25159J45721_1003387 3300002987 Bacteria 5655
2 JGI25151J46595_10006509 3300003187 Bacteria 5861
3 JGI25151J46595_10020816 3300003187 Bacteria 2758
4 Ga0070670_100000052 3300005331 Bacteria 129346
5 Ga0070666_10024997 3300005335 Bacteria 3892
6 Ga0070669_100082264 3300005353 Bacteria 2400
7 Ga0070671_100000043 3300005355 Bacteria 89426
8 Ga0070671_100012308 3300005355 Bacteria 6888
9 Ga0070673_100163916 3300005364 Bacteria 1892
10 Ga0070688_100074361 3300005365 Bacteria 2182
11 Ga0070667_100000021 3300005367 Bacteria 205662
12 Ga0070713_100010839 3300005436 Bacteria 6606
13 Ga0070685_10000002 3300005466 Bacteria 295205
14 Ga0070695_100052712 3300005545 Bacteria 2615
15 Ga0070665_100073749 3300005548 Bacteria 3418
16 Ga0068859_100075188 3300005617 Bacteria 3418
17 Ga0068864_100000219 3300005618 Bacteria 51801
18 Ga0068858_100006642 3300005842 Bacteria 11249
19 Ga0068858_100065532 3300005842 Bacteria 3361
20 Ga0068860_100001568 3300005843 Bacteria 24630
21 Ga0068862_100001673 3300005844 Bacteria 20087
22 Ga0075365_10000607 3300006038 Bacteria 14086
23 Ga0075365_10010547 3300006038 Bacteria 5387
24 Ga0075368_10037328 3300006042 Bacteria 1900
25 Ga0075363_100003551 3300006048 Bacteria 6661
26 Ga0075364_10000542 3300006051 Bacteria 19294
27 Ga0075364_10033129 3300006051 Bacteria 3324
28 Ga0070716_100038249 3300006173 Bacteria 2656
29 Ga0070712_100139362 3300006175 Bacteria 1849
30 Ga0075362_10010950 3300006177 Bacteria 3560
31 Ga0075367_10024528 3300006178 Bacteria 3403
32 Ga0075369_10000072 3300006186 Bacteria 26574
33 Ga0075369_10014546 3300006186 Bacteria 3146
34 Ga0075427_10000031 3300006194 Bacteria 9476
35 Ga0075370_10000085 3300006353 Bacteria 28579
36 Ga0068865_100050910 3300006881 Bacteria 2864
37 Ga0097620_100075187 3300006931 Bacteria 3418
38 Ga0105240_10191842 3300009093 Bacteria 2402
39 Ga0105240_10592815 3300009093 Bacteria 1221
40 Ga0105245_10000553 3300009098 Bacteria 33948
41 Ga0105247_10065330 3300009101 Bacteria 2263
42 Ga0114129_10082788 3300009147 Bacteria 4458
43 Ga0105248_10122788 3300009177 Bacteria 2930
44 Ga0157374_10161872 3300013296 Bacteria 2180
45 Ga0163163_10002672 3300014325 Bacteria 15078
46 Ga0213875_10032835 3300021388 Bacteria 2452
47 Ga0207663_10006635 3300025916 Bacteria 5946
48 Ga0207681_10000800 3300025923 Bacteria 20723
49 Ga0207650_10000002 3300025925 Bacteria 1439222
50 Ga0207687_10000245 3300025927 Bacteria 36917
51 Ga0207700_10135043 3300025928 Bacteria 2019
52 Ga0207664_10077353 3300025929 Bacteria 2696
53 Ga0207644_10004184 3300025931 Bacteria 9364
54 Ga0207665_10051981 3300025939 Bacteria 2760
55 Ga0207711_10002070 3300025941 Bacteria 18119
56 Ga0207658_10000001 3300025986 Bacteria 1439333
57 Ga0207703_10039949 3300026035 Bacteria 3752
58 Ga0207641_10122992 3300026088 Bacteria 2318
59 Ga0207676_10000001 3300026095 Bacteria 1439222
60 Ga0209813_10019124 3300027866 Bacteria 1900
61 Ga0268266_10016014 3300028379 Bacteria 6412
62 Ga0268265_10000517 3300028380 Bacteria 39538
63 Ga0268264_10000004 3300028381 Bacteria 1116842
64 Ga0265319_1021674 3300028563 Bacteria 2355
65 Ga0265334_10000005 3300028573 Bacteria 242590
66 Ga0265318_10024802 3300028577 Bacteria 2374
67 Ga0307408_100092244 3300031548 Bacteria 2289
68 Ga0265313_10000157 3300031595 Bacteria 70659
69 Ga0316576_10019631 3300031727 Bacteria 4633
70 Ga0316577_10060389 3300031733 Bacteria 2116
71 Ga0307410_10196751 3300031852 Bacteria 1536
72 Ga0316574_0065891 3300035398 Bacteria 2281
73 Ga0373947_0149595 3300035725 Bacteria 1503
74 Ga0373937_0078901 3300036401 Bacteria 3043
75 Ga0373937_0128597 3300036401 Bacteria 2365
76 Ga0316584_0003883 3300036712 Bacteria 9806
77 Ga0395900_0003560 3300037418 Bacteria 16750
78 Ga0395900_0037851 3300037418 Bacteria 4973
79 Ga0436364_0006370 3300037853 Bacteria 3296
80 Ga0436365_0165425 3300039437 Bacteria 8526
81 Ga0436365_1400688 3300039437 Bacteria 11159
82 Ga0450890_004753 3300042127 Bacteria 1765
83 Ga0453684_0015173 3300044712 Bacteria 12220
84 Ga0495603_0030670 3300046455 Bacteria 3238
85 Ga0495582_0001250 3300046473 Bacteria 14280
86 Ga0495582_0015213 3300046473 Bacteria 4230
87 Ga0495606_0000855 3300046507 Bacteria 45752
88 Ga0495608_0032674 3300046511 Bacteria 3517
89 Ga0495628_0007165 3300046516 Bacteria 9657
90 Ga0495640_0025379 3300046533 Bacteria 4300
91 Ga0495667_0000022 3300046559 Bacteria 176919
92 Ga0495667_0056079 3300046559 Bacteria 2591
93 Ga0495588_0072943 3300046674 Bacteria 1787
94 Ga0495658_0000540 3300046683 Bacteria 20594
95 Ga0495658_0097257 3300046683 Bacteria 1752
96 Ga0495680_0003889 3300047322 Bacteria 14452
97 Ga0495680_0058362 3300047322 Bacteria 2982
98 Ga0495686_0014533 3300047472 Bacteria 5413
99 Ga0495602_0003654 3300048088 Bacteria 15936
100 Ga0496105_0103229 3300048908 Bacteria 2354
101 Ga0496107_0080774 3300048910 Bacteria 2371
102 Ga0496108_0328205 3300048911 Bacteria 1334
103 Ga0496109_0025884 3300048912 Bacteria 5230
104 Ga0496114_0084161 3300048917 Bacteria 2693
105 Ga0496114_0296532 3300048917 Bacteria 1427
106 Ga0496115_0000052 3300048918 Bacteria 107262
107 Ga0496115_0005528 3300048918 Bacteria 9201
108 Ga0496116_0000008 3300048919 Bacteria 726753
109 Ga0496121_0000012 3300048924 Bacteria 653131
110 Ga0496121_0059142 3300048924 Bacteria 3162
111 Ga0496124_0000104 3300048927 Bacteria 177382
112 Ga0496126_0048998 3300048929 Bacteria 3858
113 Ga0501312_008275 3300049528 Bacteria 1348
114 Ga0501316_005964 3300049532 Bacteria 1282
115 Ga0501032_0047874 3300049569 Bacteria 2887
116 Ga0501037_0001480 3300049573 Bacteria 17185
117 Ga0501037_0018601 3300049573 Bacteria 5120
118 Ga0501046_0010152 3300049580 Bacteria 8104
119 Ga0501070_0084008 3300049586 Bacteria 2636
120 Ga0501074_0004059 3300049590 Bacteria 10445
121 Ga0501080_0045468 3300049742 Bacteria 4087
122 nmdc:mga03683_2910_c1 3300050489 Bacteria 5403
123 nmdc:mga03n38_293_c1 3300050490 Bacteria 11991
124 nmdc:mga00v17_447_c1 3300050491 Bacteria 23192
125 nmdc:mga00v17_645_c1 3300050491 Bacteria 19293
126 nmdc:mga0yw44_28_c1 3300050492 Bacteria 35472
127 nmdc:mga0yw44_7078_c1 3300050492 Bacteria 5492
128 nmdc:mga0yw44_903_c2 3300050492 Bacteria 8417
129 nmdc:mga0k408_18747_c1 3300050493 Bacteria 3865
130 nmdc:mga06z11_4973_c1 3300050494 Bacteria 5281
131 nmdc:mga04h51_21452_c1 3300050495 Bacteria 1944
132 nmdc:mga07m45_145_c1 3300050496 Bacteria 28384
133 nmdc:mga05p37_439951_c1 3300050507 Bacteria 1512
134 nmdc:mga09592_6786_c1 3300050508 Bacteria 9312
135 nmdc:mga0sz30_3412_c2 3300050516 Bacteria 3147
136 nmdc:mga0sz30_87_c1 3300050516 Bacteria 30481
137 Ga0495619_0115859 3300053085 Bacteria 1834
138 Ga0587070_012058 3300059491 Bacteria 1306

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300006042 Ga0075368_10037328 Ga0075368_100373282 301
2 3300006048 Ga0075363_100003551 Ga0075363_1000035512 301
3 3300006051 Ga0075364_10033129 Ga0075364_100331293 301
4 3300006173 Ga0070716_100038249 Ga0070716_1000382493 301
5 3300006177 Ga0075362_10010950 Ga0075362_100109503 301
6 3300006178 Ga0075367_10024528 Ga0075367_100245281 301
7 3300006186 Ga0075369_10000072 Ga0075369_100000726 301
8 3300006194 Ga0075427_10000031 Ga0075427_100000316 301
9 3300006353 Ga0075370_10000085 Ga0075370_1000008519 301
10 3300025939 Ga0207665_10051981 Ga0207665_100519812 301
11 3300027866 Ga0209813_10019124 Ga0209813_100191241 301
12 3300050489 nmdc:mga03683_2910_c1 nmdc:mga03683_2910_c1_2556_3569 301
13 3300050490 nmdc:mga03n38_293_c1 nmdc:mga03n38_293_c1_8530_9543 301
14 3300050491 nmdc:mga00v17_447_c1 nmdc:mga00v17_447_c1_13421_14434 301
15 3300050493 nmdc:mga0k408_18747_c1 nmdc:mga0k408_18747_c1_856_1869 301
16 3300050494 nmdc:mga06z11_4973_c1 nmdc:mga06z11_4973_c1_3448_4461 301
17 3300050495 nmdc:mga04h51_21452_c1 nmdc:mga04h51_21452_c1_796_1809 301
18 3300050496 nmdc:mga07m45_145_c1 nmdc:mga07m45_145_c1_8630_9643 301
19 3300050508 nmdc:mga09592_6786_c1 nmdc:mga09592_6786_c1_4123_5136 301
20 3300050516 nmdc:mga0sz30_87_c1 nmdc:mga0sz30_87_c1_9563_10576 301
21 3300053085 Ga0495619_0115859 Ga0495619_0115859_529_1575 303
22 3300009093 Ga0105240_10592815 Ga0105240_105928151 306
23 3300009093 Ga0105240_10191842 Ga0105240_101918422 316
24 3300049532 Ga0501316_005964 Ga0501316_005964_102_1130 316
25 3300031727 Ga0316576_10019631 Ga0316576_100196316 319
26 3300046473 Ga0495582_0015213 Ga0495582_0015213_2971_4116 321
27 3300048924 Ga0496121_0059142 Ga0496121_0059142_447_1457 325
28 3300048927 Ga0496124_0000104 Ga0496124_0000104_149509_150519 325
29 iso_pu_bacteria 2687453129 2687577868 326
30 iso_pu_bacteria 2857542790 2857546360 328
31 3300037418 Ga0395900_0037851 Ga0395900_0037851_3909_4913 329
32 3300013296 Ga0157374_10161872 Ga0157374_101618722 330
33 3300046473 Ga0495582_0001250 Ga0495582_0001250_6263_7258 330
34 3300046683 Ga0495658_0000540 Ga0495658_0000540_14685_15680 330
35 3300005355 Ga0070671_100012308 Ga0070671_1000123085 331
36 3300005436 Ga0070713_100010839 Ga0070713_1000108397 331
37 3300005842 Ga0068858_100006642 Ga0068858_1000066424 331
38 3300006038 Ga0075365_10000607 Ga0075365_100006073 331
39 3300006038 Ga0075365_10010547 Ga0075365_100105473 331
40 3300006051 Ga0075364_10000542 Ga0075364_1000054214 331
41 3300006175 Ga0070712_100139362 Ga0070712_1001393622 331
42 3300006186 Ga0075369_10014546 Ga0075369_100145462 331
43 3300006881 Ga0068865_100050910 Ga0068865_1000509102 331
44 3300009147 Ga0114129_10082788 Ga0114129_100827882 331
45 3300025916 Ga0207663_10006635 Ga0207663_100066355 331
46 3300025928 Ga0207700_10135043 Ga0207700_101350433 331
47 3300028563 Ga0265319_1021674 Ga0265319_10216742 331
48 3300028573 Ga0265334_10000005 Ga0265334_1000000566 331
49 3300028577 Ga0265318_10024802 Ga0265318_100248023 331
50 3300031548 Ga0307408_100092244 Ga0307408_1000922441 331
51 3300031595 Ga0265313_10000157 Ga0265313_100001571 331
52 3300031852 Ga0307410_10196751 Ga0307410_101967512 331
53 3300035725 Ga0373947_0149595 Ga0373947_0149595_356_1363 331
54 3300037418 Ga0395900_0003560 Ga0395900_0003560_12430_13506 331
55 3300048910 Ga0496107_0080774 Ga0496107_0080774_1347_2357 331
56 3300048929 Ga0496126_0048998 Ga0496126_0048998_1226_2236 331
57 3300050491 nmdc:mga00v17_645_c1 nmdc:mga00v17_645_c1_12689_13702 331
58 3300050492 nmdc:mga0yw44_28_c1 nmdc:mga0yw44_28_c1_12140_13153 331
59 3300050492 nmdc:mga0yw44_7078_c1 nmdc:mga0yw44_7078_c1_1492_2505 331
60 3300050492 nmdc:mga0yw44_903_c2 nmdc:mga0yw44_903_c2_3957_5075 331
61 3300050507 nmdc:mga05p37_439951_c1 nmdc:mga05p37_439951_c1_221_1234 331
62 3300050516 nmdc:mga0sz30_3412_c2 nmdc:mga0sz30_3412_c2_1192_2205 331
63 iso_pu_bacteria 2643221654 2644305763 331
64 3300005545 Ga0070695_100052712 Ga0070695_1000527122 332
65 3300031733 Ga0316577_10060389 Ga0316577_100603893 332
66 3300036712 Ga0316584_0003883 Ga0316584_0003883_4865_5872 332
67 3300039437 Ga0436365_0165425 Ga0436365_0165425_7407_8414 332
68 3300042127 Ga0450890_004753 Ga0450890_004753_612_1628 332
69 3300046507 Ga0495606_0000855 Ga0495606_0000855_30575_31588 332
70 3300047472 Ga0495686_0014533 Ga0495686_0014533_1224_2237 332
71 3300049569 Ga0501032_0047874 Ga0501032_0047874_1361_2374 332
72 3300049573 Ga0501037_0001480 Ga0501037_0001480_2474_3508 332
73 3300049573 Ga0501037_0018601 Ga0501037_0018601_454_1467 332
74 3300049580 Ga0501046_0010152 Ga0501046_0010152_3106_4119 332
75 3300049586 Ga0501070_0084008 Ga0501070_0084008_770_1783 332
76 3300049590 Ga0501074_0004059 Ga0501074_0004059_2263_3297 332
77 3300005364 Ga0070673_100163916 Ga0070673_1001639162 333
78 3300025929 Ga0207664_10077353 Ga0207664_100773532 333
79 3300035398 Ga0316574_0065891 Ga0316574_0065891_178_1185 333
80 3300036401 Ga0373937_0078901 Ga0373937_0078901_733_1776 333
81 3300036401 Ga0373937_0128597 Ga0373937_0128597_915_1958 333
82 3300049742 Ga0501080_0045468 Ga0501080_0045468_2798_3829 333
83 3300046516 Ga0495628_0007165 Ga0495628_0007165_5239_6252 334
84 3300048088 Ga0495602_0003654 Ga0495602_0003654_11517_12530 334
85 3300048917 Ga0496114_0296532 Ga0496114_0296532_165_1178 334
86 3300048918 Ga0496115_0005528 Ga0496115_0005528_7630_8643 334
87 3300059491 Ga0587070_012058 Ga0587070_012058_102_1121 334
88 3300009098 Ga0105245_10000553 Ga0105245_1000055312 335
89 3300025927 Ga0207687_10000245 Ga0207687_1000024511 335
90 3300044712 Ga0453684_0015173 Ga0453684_0015173_4700_5713 335
91 3300046533 Ga0495640_0025379 Ga0495640_0025379_3000_4013 335
92 3300047322 Ga0495680_0058362 Ga0495680_0058362_1276_2292 335
93 3300046559 Ga0495667_0056079 Ga0495667_0056079_544_1560 336
94 3300046511 Ga0495608_0032674 Ga0495608_0032674_2205_3224 337
95 iso_pu_bacteria 2956897341 2956897681 338
96 3300005331 Ga0070670_100000052 Ga0070670_100000052131 340
97 3300005335 Ga0070666_10024997 Ga0070666_100249973 340
98 3300005353 Ga0070669_100082264 Ga0070669_1000822642 340
99 3300005355 Ga0070671_100000043 Ga0070671_10000004352 340
100 3300005365 Ga0070688_100074361 Ga0070688_1000743612 340
101 3300005367 Ga0070667_100000021 Ga0070667_1000000213 340
102 3300005466 Ga0070685_10000002 Ga0070685_1000000230 340
103 3300005548 Ga0070665_100073749 Ga0070665_1000737492 340
104 3300005617 Ga0068859_100075188 Ga0068859_1000751882 340
105 3300005618 Ga0068864_100000219 Ga0068864_10000021955 340
106 3300005842 Ga0068858_100065532 Ga0068858_1000655322 340
107 3300005843 Ga0068860_100001568 Ga0068860_10000156811 340
108 3300005844 Ga0068862_100001673 Ga0068862_1000016733 340
109 3300006931 Ga0097620_100075187 Ga0097620_1000751872 340
110 3300009101 Ga0105247_10065330 Ga0105247_100653302 340
111 3300009177 Ga0105248_10122788 Ga0105248_101227882 340
112 3300014325 Ga0163163_10002672 Ga0163163_100026729 340
113 3300021388 Ga0213875_10032835 Ga0213875_100328352 340
114 3300025923 Ga0207681_10000800 Ga0207681_100008003 340
115 3300025925 Ga0207650_10000002 Ga0207650_10000002677 340
116 3300025931 Ga0207644_10004184 Ga0207644_100041843 340
117 3300025941 Ga0207711_10002070 Ga0207711_100020707 340
118 3300025986 Ga0207658_10000001 Ga0207658_10000001675 340
119 3300026035 Ga0207703_10039949 Ga0207703_100399492 340
120 3300026088 Ga0207641_10122992 Ga0207641_101229922 340
121 3300026095 Ga0207676_10000001 Ga0207676_10000001677 340
122 3300028379 Ga0268266_10016014 Ga0268266_100160144 340
123 3300028380 Ga0268265_10000517 Ga0268265_1000051721 340
124 3300028381 Ga0268264_10000004 Ga0268264_10000004667 340
125 3300037853 Ga0436364_0006370 Ga0436364_0006370_1434_2498 340
126 3300039437 Ga0436365_1400688 Ga0436365_1400688_1561_2595 340
127 3300048919 Ga0496116_0000008 Ga0496116_0000008_311285_312331 340
128 3300048924 Ga0496121_0000012 Ga0496121_0000012_403414_404460 340
129 3300003187 JGI25151J46595_10006509 JGI25151J46595_100065095 341
130 3300046559 Ga0495667_0000022 Ga0495667_0000022_30249_31280 341
131 3300047322 Ga0495680_0003889 Ga0495680_0003889_220_1251 341
132 3300048918 Ga0496115_0000052 Ga0496115_0000052_74791_75840 341
133 3300002987 JGI25159J45721_1003387 JGI25159J45721_10033872 342
134 3300003187 JGI25151J46595_10020816 JGI25151J46595_100208163 342
135 3300046455 Ga0495603_0030670 Ga0495603_0030670_714_1769 342
136 3300046674 Ga0495588_0072943 Ga0495588_0072943_48_1103 342
137 3300046683 Ga0495658_0097257 Ga0495658_0097257_475_1530 342
138 3300048908 Ga0496105_0103229 Ga0496105_0103229_118_1170 342
139 3300048911 Ga0496108_0328205 Ga0496108_0328205_85_1137 342
140 3300048912 Ga0496109_0025884 Ga0496109_0025884_2862_3914 342
141 3300048917 Ga0496114_0084161 Ga0496114_0084161_456_1508 342
142 3300049528 Ga0501312_008275 Ga0501312_008275_207_1235 342

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02800

Gp_dh_C

Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain

196

351

0.98

PF00044

Gp_dh_N

Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

40

143

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
4dib-assembly1.cif.gz_E the crystal structure of glyceraldehyde-3-phosphate dehydrogenase from bacillus anthracis str. sterne 0.9925 1 334
4dib-assembly2.cif.gz_C the crystal structure of glyceraldehyde-3-phosphate dehydrogenase from bacillus anthracis str. sterne 0.9895 1 334
4dib-assembly2.cif.gz_H the crystal structure of glyceraldehyde-3-phosphate dehydrogenase from bacillus anthracis str. sterne 0.9893 1 329
4dib-assembly2.cif.gz_G the crystal structure of glyceraldehyde-3-phosphate dehydrogenase from bacillus anthracis str. sterne 0.9888 2 335
4dib-assembly1.cif.gz_F the crystal structure of glyceraldehyde-3-phosphate dehydrogenase from bacillus anthracis str. sterne 0.9885 1 333
ID Description Score Start End Superfamily
4dibE02 Alpha Beta;2-Layer Sandwich;Dihydrodipicolinate Reductase; domain 2;Dihydrodipicolinate Reductase; domain 2 0.9909 150 314 3.30.360.10
4dibE02 Alpha Beta;2-Layer Sandwich;Dihydrodipicolinate Reductase; domain 2;Dihydrodipicolinate Reductase; domain 2 0.9844 150 314 3.30.360.10
af_Q2FXP2_4_150_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9828 4 148 3.40.50.720
af_Q2G032_1_148_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9758 2 148 3.40.50.720
af_F1M004_3_96_3.30.360.10 Alpha Beta;2-Layer Sandwich;Dihydrodipicolinate Reductase; domain 2;Dihydrodipicolinate Reductase; domain 2 0.9709 234 314 3.30.360.10
ID Description Score Start End GO Terms
AF-I3RJH9-F1-model_v4 Glyceraldehyde-3-phosphate dehydrogenase 0.997 240 332 GO:0016620
AF-A0A357V737-F1-model_v4 Erythrose-4-phosphate dehydrogenase (EC 1.2.1.12) 0.9961 232 320 GO:0004365
AF-A0A239P280-F1-model_v4 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 0.9952 76 168 GO:0006096
GO:0016620
GO:0051287
AF-A0A356QI66-F1-model_v4 Erythrose-4-phosphate dehydrogenase (EC 1.2.1.12) 0.9947 220 320 GO:0004365
AF-A5Z1X9-F1-model_v4 Chloroplast glyceraldehyde-3-phosphate dehydrogenase 0.9943 235 316 GO:0016620

Feature Viewer

pLDDT pTM Quality
91.47 0.9 High
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Predicted Structure (AlphaFold2)

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