F184751

General Info

Members Datasets Scaffolds Average Seq Length
142 106 139 246

Family's Representative Sequence

Representative Sequence 3300005334|Ga0068869_100005132|Ga0068869_1000051325
Length 270
Sequence VPGTGTFKGAQRSYTRRLRIDLNADVGESFGHWPMGADELLLAWVSSVNVACGFHAGDPRVMDHTVEQAVRAGVAVGAHPGHFDLRGFGRRAIPAEPEEIERDVLYQVGALTAFTHAHGVPLVHVKPHGALYNQAATDERVARAIARGVARASRELVLVGLASTAAMRHAALAEGLPFAAEAFADRRYERDGTLTPRGRPGAVIDDPGQAADQALLIAIKGRVRASDGTEVPLQADTLCLHSDTPRAAENARAVRQALEAAGVDVLPLGA

Samples

Sample ID Description Type Environment
1 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
2 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
3 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
4 3300002704 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB Metagenome Unclassified
5 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
6 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
7 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
8 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
9 3300003751 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 Metagenome Endosphere
10 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
11 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
12 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
13 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
14 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
15 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
16 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
17 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
18 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
19 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
20 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
21 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
22 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
23 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
24 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
25 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
26 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
27 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
28 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
29 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
30 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
31 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
32 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
33 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
34 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
35 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
36 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
37 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
38 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
39 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
40 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
41 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
42 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
43 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
44 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
45 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
46 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
47 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
48 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
49 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
50 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
51 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
52 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
53 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
54 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
55 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
63 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
64 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
65 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
66 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
67 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
68 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
69 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
70 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
71 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
72 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
73 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
74 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
75 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
76 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
77 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
78 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
79 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
80 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
81 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
82 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
83 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
84 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
85 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
86 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
87 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
88 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
90 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
91 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
92 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
93 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
94 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
95 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
96 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
97 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
98 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
99 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
100 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
101 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
102 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
103 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
104 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
105 8002392321 Alcaligenes faecalis Mc250 Isolate Rhizosphere
106 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 97.18
Metatranscriptomes 0.7
Isolates 2.11

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 14.08
Nodule 0
Rhizoplane 0.7
Rhizosphere 79.58
Stem 0
Stem Tuber 0
Unclassified 5.63

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10006957 3300001979 Bacteria 4641
2 JGI24739J22299_10018427 3300001989 Bacteria 2510
3 JGI25155J39150_1000459 3300002704 Bacteria 10374
4 JGI25154J39366_1000001 3300002738 Bacteria 483450
5 JGI25153J46596_10000345 3300003215 Bacteria 32628
6 rootH2_10201632 3300003320 Unclassified 2184
7 JGI25160J50197_1003910 3300003354 Bacteria 6522
8 JGI25160J50197_1043697 3300003354 Bacteria 1006
9 Ga0055538_1000155 3300003751 Bacteria 46426
10 Ga0055526_1004748 3300003771 Bacteria 8051
11 Ga0055528_1000308 3300003790 Bacteria 41407
12 Ga0055530_10000385 3300003791 Bacteria 39749
13 Ga0065165_1000053 3300005262 Bacteria 189081
14 Ga0070683_100654079 3300005329 Bacteria 1006
15 Ga0070677_10068231 3300005333 Bacteria 1488
16 Ga0068869_100005132 3300005334 Bacteria 8211
17 Ga0070675_100617547 3300005354 Bacteria 984
18 Ga0070703_10019134 3300005406 Bacteria 1984
19 Ga0070694_100053208 3300005444 Bacteria 2739
20 Ga0070694_100091673 3300005444 Bacteria 2134
21 Ga0070708_100007550 3300005445 Bacteria 8707
22 Ga0070708_100055447 3300005445 Bacteria 3525
23 Ga0070708_100091146 3300005445 Bacteria 2776
24 Ga0070678_100458285 3300005456 Unclassified 1118
25 Ga0068867_100040333 3300005459 Unclassified 3407
26 Ga0070706_100008565 3300005467 Bacteria 9534
27 Ga0070707_100454259 3300005468 Bacteria 1242
28 Ga0070698_100512815 3300005471 Bacteria 1137
29 Ga0070699_100144233 3300005518 Bacteria 2104
30 Ga0070699_100270828 3300005518 Bacteria 1520
31 Ga0070697_100003832 3300005536 Bacteria 11546
32 Ga0070696_100021067 3300005546 Bacteria 4419
33 Ga0070704_100205758 3300005549 Bacteria 1591
34 Ga0068857_100293051 3300005577 Bacteria 1499
35 Ga0068852_100010381 3300005616 Bacteria 6958
36 Ga0068852_100132372 3300005616 Bacteria 2298
37 Ga0075363_100065123 3300006048 Bacteria 1970
38 Ga0097621_100244885 3300006237 Bacteria 1568
39 Ga0075370_10066932 3300006353 Unclassified 2050
40 Ga0075428_100021779 3300006844 Bacteria 7096
41 Ga0075428_100233051 3300006844 Bacteria 1987
42 Ga0075428_100283624 3300006844 Bacteria 1782
43 Ga0075431_100238613 3300006847 Bacteria 1850
44 Ga0075433_10026571 3300006852 Bacteria 4902
45 Ga0075429_100193619 3300006880 Bacteria 1781
46 Ga0075436_100030725 3300006914 Bacteria 3697
47 Ga0111539_10014976 3300009094 Bacteria 9667
48 Ga0111539_10040808 3300009094 Bacteria 5584
49 Ga0114129_10027876 3300009147 Bacteria 7998
50 Ga0114129_10096337 3300009147 Bacteria 4097
51 Ga0114129_10567879 3300009147 Bacteria 1473
52 Ga0157371_10289834 3300013102 Bacteria 1183
53 Ga0157370_10485210 3300013104 Bacteria 1136
54 Ga0163163_10304006 3300014325 Bacteria 1647
55 Ga0157380_10148011 3300014326 Bacteria 2026
56 Ga0213873_10022990 3300021358 Bacteria 1482
57 Ga0213872_10022275 3300021361 Bacteria 2918
58 Ga0209646_1000002 3300025246 Bacteria 1425781
59 Ga0209026_1000229 3300025250 Bacteria 76521
60 Ga0209673_1000034 3300025273 Bacteria 328788
61 Ga0209564_1002426 3300025295 Bacteria 14787
62 Ga0209564_1004181 3300025295 Bacteria 9009
63 Ga0209758_1000419 3300025297 Bacteria 72133
64 Ga0209758_1006999 3300025297 Bacteria 7847
65 Ga0209758_1008413 3300025297 Bacteria 6691
66 Ga0209050_1000353 3300025298 Bacteria 88509
67 Ga0207426_1000324 3300025302 Bacteria 91661
68 Ga0207426_1000592 3300025302 Bacteria 47901
69 Ga0209257_1005974 3300025304 Bacteria 8162
70 Ga0207684_10033003 3300025910 Bacteria 4403
71 Ga0207646_10070597 3300025922 Bacteria 3119
72 Ga0207689_10007483 3300025942 Bacteria 9571
73 Ga0207648_10009587 3300026089 Bacteria 9263
74 Ga0207683_10303861 3300026121 Unclassified 1460
75 Ga0207698_10134207 3300026142 Bacteria 2121
76 Ga0207698_10386550 3300026142 Bacteria 1333
77 Ga0265322_10001743 3300028654 Bacteria 6909
78 Ga0265322_10057648 3300028654 Bacteria 1101
79 Ga0265760_10122071 3300031090 Unclassified 837
80 Ga0265330_10020665 3300031235 Bacteria 3009
81 Ga0265328_10022432 3300031239 Bacteria 2403
82 Ga0265325_10010701 3300031241 Bacteria 5297
83 Ga0265340_10014941 3300031247 Bacteria 4043
84 Ga0265331_10011883 3300031250 Bacteria 4747
85 Ga0265316_10019119 3300031344 Bacteria 5867
86 Ga0265316_10062716 3300031344 Bacteria 2884
87 Ga0265316_10115289 3300031344 Bacteria 2031
88 Ga0265313_10016640 3300031595 Bacteria 4219
89 Ga0316575_10159200 3300031665 Archaea 933
90 Ga0316579_10251698 3300031691 Archaea 854
91 Ga0316584_0316502 3300036712 Bacteria 1127
92 Ga0395900_0018196 3300037418 Bacteria 7168
93 Ga0436360_0890853 3300039438 Bacteria 16925
94 Ga0436361_1168600 3300039447 Bacteria 15816
95 Ga0436362_0204555 3300039453 Bacteria 4152
96 Ga0451577_0042558 3300042876 Bacteria 4073
97 Ga0451577_0112310 3300042876 Bacteria 2438
98 Ga0451577_0295721 3300042876 Bacteria 1467
99 Ga0453684_0001576 3300044712 Bacteria 63117
100 Ga0453684_0023623 3300044712 Bacteria 9036
101 Ga0453684_0036220 3300044712 Bacteria 6803
102 Ga0453684_0084121 3300044712 Bacteria 3958
103 Ga0453684_0201440 3300044712 Bacteria 2320
104 Ga0451576_0000192 3300045051 Bacteria 154140
105 Ga0451576_0026279 3300045051 Bacteria 6263
106 Ga0495622_0260240 3300046557 Unclassified 762
107 Ga0495623_0106426 3300046679 Bacteria 1704
108 Ga0495604_0113553 3300047317 Bacteria 1971
109 Ga0495675_0035616 3300047444 Unclassified 3178
110 Ga0495675_0122332 3300047444 Bacteria 1620
111 Ga0495677_0027949 3300047445 Bacteria 2047
112 Ga0496109_0548934 3300048912 Bacteria 1090
113 Ga0496126_0294965 3300048929 Bacteria 1340
114 Ga0501040_0141710 3300049576 Bacteria 1694
115 Ga0501041_0150540 3300049577 Bacteria 1453
116 Ga0501047_0011832 3300049581 Bacteria 8253
117 Ga0501048_0190308 3300049582 Bacteria 1454
118 Ga0501071_0129395 3300049587 Bacteria 1875
119 Ga0501072_0054135 3300049588 Bacteria 3161
120 Ga0501072_0356699 3300049588 Bacteria 1161
121 Ga0501075_0112551 3300049591 Unclassified 2070
122 Ga0501075_0117245 3300049591 Bacteria 2024
123 Ga0501075_0371386 3300049591 Bacteria 1090
124 Ga0501076_0152231 3300049592 Bacteria 1882
125 Ga0501076_0251889 3300049592 Bacteria 1445
126 Ga0501079_0040826 3300049741 Bacteria 3581
127 Ga0501079_0942242 3300049741 Bacteria 680
128 Ga0501080_0336798 3300049742 Bacteria 1364
129 Ga0501080_0689367 3300049742 Bacteria 902
130 Ga0501081_0098735 3300049743 Bacteria 2062
131 nmdc:mga0qj67_123659_c1 3300050509 Bacteria 2093
132 nmdc:mga06r32_230453_c1 3300050510 Bacteria 1840
133 nmdc:mga08y16_19178_c1 3300050511 Bacteria 7207
134 nmdc:mga08y16_9957_c1 3300050511 Bacteria 9978
135 nmdc:mga08x19_79909_c1 3300050514 Bacteria 2145
136 Ga0501084_0220071 3300054114 Bacteria 1602
137 Ga0501084_0265545 3300054114 Bacteria 1449
138 Ga0501084_0273498 3300054114 Bacteria 1426
139 Ga0501082_0106339 3300060353 Bacteria 2428

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049741 Ga0501079_0942242 Ga0501079_0942242_19_648 196
2 3300046557 Ga0495622_0260240 Ga0495622_0260240_21_644 206
3 3300054114 Ga0501084_0273498 Ga0501084_0273498_691_1359 206
4 3300006048 Ga0075363_100065123 Ga0075363_1000651232 208
5 3300044712 Ga0453684_0201440 Ga0453684_0201440_205_969 209
6 3300009147 Ga0114129_10567879 Ga0114129_105678792 212
7 3300005518 Ga0070699_100144233 Ga0070699_1001442331 216
8 3300009147 Ga0114129_10096337 Ga0114129_100963373 222
9 3300049591 Ga0501075_0371386 Ga0501075_0371386_19_792 224
10 3300060353 Ga0501082_0106339 Ga0501082_0106339_922_1695 224
11 3300047444 Ga0495675_0035616 Ga0495675_0035616_768_1538 225
12 3300005444 Ga0070694_100091673 Ga0070694_1000916732 227
13 3300006852 Ga0075433_10026571 Ga0075433_100265715 227
14 3300009147 Ga0114129_10027876 Ga0114129_100278767 227
15 3300036712 Ga0316584_0316502 Ga0316584_0316502_271_1041 227
16 3300044712 Ga0453684_0084121 Ga0453684_0084121_128_883 227
17 3300054114 Ga0501084_0265545 Ga0501084_0265545_179_889 227
18 3300005445 Ga0070708_100007550 Ga0070708_1000075508 228
19 3300005445 Ga0070708_100055447 Ga0070708_1000554472 228
20 3300005536 Ga0070697_100003832 Ga0070697_1000038328 228
21 3300047317 Ga0495604_0113553 Ga0495604_0113553_834_1604 229
22 3300006844 Ga0075428_100233051 Ga0075428_1002330512 230
23 3300048929 Ga0496126_0294965 Ga0496126_0294965_319_1089 230
24 3300006914 Ga0075436_100030725 Ga0075436_1000307251 231
25 3300050514 nmdc:mga08x19_79909_c1 nmdc:mga08x19_79909_c1_85_846 231
26 3300005406 Ga0070703_10019134 Ga0070703_100191342 233
27 3300005444 Ga0070694_100053208 Ga0070694_1000532083 233
28 3300005445 Ga0070708_100091146 Ga0070708_1000911462 233
29 3300005467 Ga0070706_100008565 Ga0070706_1000085658 233
30 3300005471 Ga0070698_100512815 Ga0070698_1005128151 233
31 3300005546 Ga0070696_100021067 Ga0070696_1000210672 233
32 3300005549 Ga0070704_100205758 Ga0070704_1002057582 233
33 3300009094 Ga0111539_10040808 Ga0111539_100408082 233
34 3300025910 Ga0207684_10033003 Ga0207684_100330032 233
35 3300050511 nmdc:mga08y16_9957_c1 nmdc:mga08y16_9957_c1_5052_5762 233
36 3300046679 Ga0495623_0106426 Ga0495623_0106426_601_1371 234
37 3300049576 Ga0501040_0141710 Ga0501040_0141710_701_1474 234
38 3300006844 Ga0075428_100283624 Ga0075428_1002836242 236
39 3300006847 Ga0075431_100238613 Ga0075431_1002386132 236
40 3300006880 Ga0075429_100193619 Ga0075429_1001936192 236
41 3300050510 nmdc:mga06r32_230453_c1 nmdc:mga06r32_230453_c1_70_834 236
42 3300048912 Ga0496109_0548934 Ga0496109_0548934_351_1076 237
43 3300049591 Ga0501075_0117245 Ga0501075_0117245_1137_1874 237
44 3300049741 Ga0501079_0040826 Ga0501079_0040826_131_868 237
45 3300049742 Ga0501080_0689367 Ga0501080_0689367_36_773 237
46 3300054114 Ga0501084_0220071 Ga0501084_0220071_671_1408 237
47 3300009094 Ga0111539_10014976 Ga0111539_100149762 239
48 3300050511 nmdc:mga08y16_19178_c1 nmdc:mga08y16_19178_c1_2701_3420 239
49 3300031665 Ga0316575_10159200 Ga0316575_101592002 241
50 3300031691 Ga0316579_10251698 Ga0316579_102516981 241
51 3300045051 Ga0451576_0000192 Ga0451576_0000192_4538_5266 241
52 3300005468 Ga0070707_100454259 Ga0070707_1004542591 242
53 3300005518 Ga0070699_100270828 Ga0070699_1002708282 242
54 iso_pu_bacteria 2929921140 2929922910 242
55 iso_pu_bacteria 8002392321 8002394698 242
56 iso_pu_bacteria 8003151029 8003154737 242
57 3300014326 Ga0157380_10148011 Ga0157380_101480112 243
58 3300049577 Ga0501041_0150540 Ga0501041_0150540_580_1362 243
59 3300049587 Ga0501071_0129395 Ga0501071_0129395_755_1537 243
60 3300049588 Ga0501072_0054135 Ga0501072_0054135_149_931 243
61 3300049592 Ga0501076_0251889 Ga0501076_0251889_313_1095 243
62 3300049742 Ga0501080_0336798 Ga0501080_0336798_332_1114 243
63 3300049743 Ga0501081_0098735 Ga0501081_0098735_822_1604 243
64 3300005329 Ga0070683_100654079 Ga0070683_1006540791 244
65 3300006237 Ga0097621_100244885 Ga0097621_1002448851 244
66 3300026142 Ga0207698_10386550 Ga0207698_103865502 244
67 3300042876 Ga0451577_0112310 Ga0451577_0112310_1127_1876 244
68 3300002704 JGI25155J39150_1000459 JGI25155J39150_10004596 245
69 3300003751 Ga0055538_1000155 Ga0055538_100015524 245
70 3300005333 Ga0070677_10068231 Ga0070677_100682312 245
71 3300005456 Ga0070678_100458285 Ga0070678_1004582852 245
72 3300005616 Ga0068852_100010381 Ga0068852_1000103816 245
73 3300006844 Ga0075428_100021779 Ga0075428_1000217795 245
74 3300026121 Ga0207683_10303861 Ga0207683_103038612 245
75 3300037418 Ga0395900_0018196 Ga0395900_0018196_3884_4642 245
76 3300045051 Ga0451576_0026279 Ga0451576_0026279_830_1600 245
77 3300001979 JGI24740J21852_10006957 JGI24740J21852_100069572 246
78 3300001989 JGI24739J22299_10018427 JGI24739J22299_100184272 246
79 3300002738 JGI25154J39366_1000001 JGI25154J39366_1000001193 246
80 3300003215 JGI25153J46596_10000345 JGI25153J46596_100003452 246
81 3300003320 rootH2_10201632 rootH2_102016322 246
82 3300003354 JGI25160J50197_1003910 JGI25160J50197_10039105 246
83 3300003354 JGI25160J50197_1043697 JGI25160J50197_10436972 246
84 3300003771 Ga0055526_1004748 Ga0055526_10047483 246
85 3300003790 Ga0055528_1000308 Ga0055528_100030835 246
86 3300003791 Ga0055530_10000385 Ga0055530_1000038537 246
87 3300005262 Ga0065165_1000053 Ga0065165_100005334 246
88 3300005334 Ga0068869_100005132 Ga0068869_1000051325 246
89 3300005354 Ga0070675_100617547 Ga0070675_1006175471 246
90 3300005459 Ga0068867_100040333 Ga0068867_1000403332 246
91 3300005577 Ga0068857_100293051 Ga0068857_1002930512 246
92 3300005616 Ga0068852_100132372 Ga0068852_1001323722 246
93 3300006353 Ga0075370_10066932 Ga0075370_100669322 246
94 3300013102 Ga0157371_10289834 Ga0157371_102898342 246
95 3300013104 Ga0157370_10485210 Ga0157370_104852101 246
96 3300014325 Ga0163163_10304006 Ga0163163_103040062 246
97 3300021358 Ga0213873_10022990 Ga0213873_100229902 246
98 3300021361 Ga0213872_10022275 Ga0213872_100222752 246
99 3300025246 Ga0209646_1000002 Ga0209646_1000002193 246
100 3300025250 Ga0209026_1000229 Ga0209026_100022914 246
101 3300025273 Ga0209673_1000034 Ga0209673_1000034163 246
102 3300025295 Ga0209564_1002426 Ga0209564_10024267 246
103 3300025295 Ga0209564_1004181 Ga0209564_10041817 246
104 3300025297 Ga0209758_1000419 Ga0209758_100041917 246
105 3300025297 Ga0209758_1006999 Ga0209758_10069993 246
106 3300025297 Ga0209758_1008413 Ga0209758_10084133 246
107 3300025298 Ga0209050_1000353 Ga0209050_100035337 246
108 3300025302 Ga0207426_1000324 Ga0207426_100032443 246
109 3300025302 Ga0207426_1000592 Ga0207426_100059246 246
110 3300025304 Ga0209257_1005974 Ga0209257_10059745 246
111 3300025922 Ga0207646_10070597 Ga0207646_100705972 246
112 3300025942 Ga0207689_10007483 Ga0207689_100074835 246
113 3300026089 Ga0207648_10009587 Ga0207648_100095874 246
114 3300026142 Ga0207698_10134207 Ga0207698_101342072 246
115 3300028654 Ga0265322_10001743 Ga0265322_100017436 246
116 3300028654 Ga0265322_10057648 Ga0265322_100576481 246
117 3300031090 Ga0265760_10122071 Ga0265760_101220711 246
118 3300031235 Ga0265330_10020665 Ga0265330_100206652 246
119 3300031239 Ga0265328_10022432 Ga0265328_100224323 246
120 3300031241 Ga0265325_10010701 Ga0265325_100107014 246
121 3300031247 Ga0265340_10014941 Ga0265340_100149413 246
122 3300031250 Ga0265331_10011883 Ga0265331_100118834 246
123 3300031344 Ga0265316_10019119 Ga0265316_100191195 246
124 3300031344 Ga0265316_10062716 Ga0265316_100627163 246
125 3300031344 Ga0265316_10115289 Ga0265316_101152892 246
126 3300031595 Ga0265313_10016640 Ga0265313_100166404 246
127 3300039438 Ga0436360_0890853 Ga0436360_0890853_6173_6949 246
128 3300039447 Ga0436361_1168600 Ga0436361_1168600_9095_9871 246
129 3300039453 Ga0436362_0204555 Ga0436362_0204555_3233_4012 246
130 3300042876 Ga0451577_0042558 Ga0451577_0042558_2778_3539 246
131 3300042876 Ga0451577_0295721 Ga0451577_0295721_51_806 246
132 3300044712 Ga0453684_0001576 Ga0453684_0001576_42596_43348 246
133 3300044712 Ga0453684_0023623 Ga0453684_0023623_121_885 246
134 3300044712 Ga0453684_0036220 Ga0453684_0036220_877_1638 246
135 3300047444 Ga0495675_0122332 Ga0495675_0122332_705_1475 246
136 3300047445 Ga0495677_0027949 Ga0495677_0027949_713_1483 246
137 3300049581 Ga0501047_0011832 Ga0501047_0011832_4704_5483 246
138 3300049582 Ga0501048_0190308 Ga0501048_0190308_424_1191 246
139 3300049588 Ga0501072_0356699 Ga0501072_0356699_349_1116 246
140 3300049591 Ga0501075_0112551 Ga0501075_0112551_401_1168 246
141 3300049592 Ga0501076_0152231 Ga0501076_0152231_348_1115 246
142 3300050509 nmdc:mga0qj67_123659_c1 nmdc:mga0qj67_123659_c1_1225_2013 246

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03746

LamB_YcsF

LamB/YcsF family

20

259

0.99

Structural Annotation

Top 5 Hits

ID Description Score Start End
1v6t-assembly1.cif.gz_A crystal structure of lactam utilization protein from pyrococcus horikoshii ot3 0.9485 3 244
1xw8-assembly1.cif.gz_A-2 x-ray structure of putative lactam utilization protein ybgl. northeast structural genomics consortium target et90. 0.9456 3 246
2xu2-assembly1.cif.gz_A crystal structure of the hypothetical protein pa4511 from pseudomonas aeruginosa 0.9452 3 234
2dfa-assembly1.cif.gz_A crystal structure of lactam utilization protein from thermus thermophilus hb8 0.9391 3 244
1xw8-assembly1.cif.gz_A-2 x-ray structure of putative lactam utilization protein ybgl. northeast structural genomics consortium target et90. 0.9297 3 246
ID Description Score Start End Superfamily
af_Q2FXX2_1_250_3.20.20.370 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycoside hydrolase/deacetylase 0.9817 3 246 3.20.20.370
af_Q2FXX2_1_250_3.20.20.370 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycoside hydrolase/deacetylase 0.9699 3 246 3.20.20.370
1v6tA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycoside hydrolase/deacetylase 0.9485 3 244 3.20.20.370
2x5eA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycoside hydrolase/deacetylase 0.9452 3 234 3.20.20.370
2dfaA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycoside hydrolase/deacetylase 0.9391 3 244 3.20.20.370
ID Description Score Start End GO Terms
AF-A0A5P0JK03-F1-model_v4 LamB/YcsF family protein 0.9954 108 218 GO:0005975
AF-A0A382MF90-F1-model_v4 LamB/YcsF family protein 0.9948 16 124 GO:0005975
AF-A0A2G6G7N0-F1-model_v4 Lactam utilization protein LamB 0.9943 1 245 GO:0005975
AF-A0A4Q5TQG5-F1-model_v4 deleted 0.9941 3 202
AF-A0A2V8SPQ0-F1-model_v4 LamB/YcsF family protein 0.9936 1 246 GO:0005975

Feature Viewer

pLDDT pTM Quality
95.46 0.93 High
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Predicted Structure (AlphaFold2)

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