F184265

General Info

Members Datasets Scaffolds Average Seq Length
141 100 282 873

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|8048379754|8048383860
Length 1003
Sequence WSGRGPGPGSGPGSGPGSGGGPGAPTGRGYGQRSRWHPGRGVRTVAGQVFVLQVGVVLLLVVAAVVALVLQSRYDSEREARNRSMAVAESFANAPGMVSALRGRDPSAVLQPLAERARKGSGVDFVVAMTPQGIRYTHPNPARIGKHFMGSIRPAAEGRTVQETFTGTLGLSVRSVVPVKDAQGKVVGLVAAGITIKKVSGAADHQMPLLFGAAAAALALATAGTALVSRRLRRQTHGLDPSEMTRMYEHHDAVLHSVREGVLIVGGDGRLVLANDEARRLFDLPSDAEGRLVSELGFDPHTAALLASGRPATDEVHTAGERLLSVSHRPTDRDGGPPGSVATLRDTTELRALSGKVDLARNRLKLLYDAGVSIGTTLDVVRTAQELAEYAVARFADYVSVDLADSVLRGEEPPDGVSGLSESPDGVSGLSEPPDGVPGLSEPPDGVPGLSDPPDGVPGLSDPPDGVPGLSEPPDAGSWAAVAAADGGRTVLRRTALSGIRDDGPLYPLGMLIEFGPSAPQARGFRSGAVTVEPVLGDFGGWQEQDPEHARRIVDYGIHSMITVPLRARGVVLGVASFMRAEKPEPFEEDDVSLAEELVTRAAVSIDNARRYTREHTMAVTLQRSLLPRMLPEQNALDVAYRYLPAESGVGGDWFDVIPLPGARVALVVGDVVGHGLHAAATMGRLRTAVHNFSTLDLPPDEILSHLDDLIARIDQDEGPGGLDGDGGGGGGGGGGGEGITGATCLYAIYDPVTRRCTMARAGHPPPALVRPDGSVEFLELPAGPPLGLGGLPFETAELELPEGSHLVLYTDGLIEKRDRDIETGLEMLRGALAHPGRTPEDACTAVLDALLPDRPSDDIALIVARTRVLEPGLTADWEVPSDPAQVAEVRAAVARKLAEWDLGDVAFTTELILSELITNAIRYATGPIRVRLLCDRSLICEVFDTSSTSPHLRYAGTTDEGGRGLFLVSQFADRWGTRYTADGKVIWTEQTLPLSKHGRPRP

Samples

Sample ID Description Type Environment
1 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
2 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
3 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
4 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
5 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
6 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
7 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
8 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
9 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
10 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
11 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
12 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
13 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
14 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
15 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
16 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
17 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
18 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
19 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
20 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
21 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
22 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
23 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
24 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
25 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
26 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
27 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
28 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
29 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
30 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
31 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
32 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
33 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
34 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
35 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
36 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
37 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
38 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
39 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
40 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
41 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
42 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
43 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
44 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
45 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
46 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
47 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
48 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
49 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
50 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
51 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
52 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
53 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
54 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
55 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
56 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
57 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
58 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
59 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
60 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
61 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
62 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
63 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
64 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
65 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
66 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
67 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
68 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
69 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
70 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
71 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere
72 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
73 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
74 8048379754 Streptomyces asiaticus DSM 41761 Isolate Rhizosphere
75 2554235005 Streptomyces violaceusniger SPC6 Isolate Rhizosphere
76 2616644814 Streptomyces mirabilis OK461 Isolate Rhizosphere
77 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
78 2791355406 Streptomyces rhizosphaericus NRRL B-24304 Isolate Unclassified
79 2808606375 Streptomyces sp. SLBN-31 Isolate Unclassified
80 2808606982 Streptomyces sp. SLBN-118 Isolate Unclassified
81 2811994917 Streptomyces sp. SLBN-134 Isolate Unclassified
82 2818991472 Kitasatospora viridis DSM 44826 Isolate Rhizosphere
83 2863404153 Streptomyces scabiei SAI-025 (Annotation) (version 2) Isolate Unclassified
84 2867346516 Streptomyces radicis AZ1-7 Isolate Unclassified
85 2867475112 Streptomyces sp. TM32 Isolate Unclassified
86 2912715099 Streptomyces sp. Z423-1 Isolate Rhizosphere
87 2912757875 Streptomyces sp. S4.7 Isolate Rhizosphere
88 2947224130 Streptomyces afghaniensis W1I20 Isolate Rhizosphere
89 2997451912 Streptomyces piniterrae jys28 Isolate Rhizosphere
90 2997600082 Streptomyces coffeae CA1R205 Isolate Unclassified
91 3006393351 Streptomyces sp. SID4985 Isolate Unclassified
92 3006486233 Streptomyces sp. BR123 Isolate Rhizosphere
93 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
94 8008574985 Streptomyces sp. Jing01 Isolate Rhizosphere
95 8025530807 Streptomyces sp. 4R-3d Isolate Unclassified
96 8047893842 Streptomyces cangkringensis DSM 41769 Isolate Rhizosphere
97 8048127548 Streptomyces samsunensis DSM 42010 Isolate Rhizosphere
98 8048356638 Streptomyces rhizosphaericus DSM 41760 Isolate Rhizosphere
99 8048369669 Streptomyces indonesiensis DSM 41759 Isolate Rhizoplane
100 8054160619 Streptomyces rhizoryzae RS10V-4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 72.34
Metatranscriptomes 0
Isolates 27.66

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.84
Nodule 0
Rhizoplane 1.42
Rhizosphere 80.14
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootL2_10034152 3300003322 Bacteria 4942
2 JGI25160J50197_1012312 3300003354 Bacteria 2978
3 Ga0068855_100015234 3300005563 Bacteria 9257
4 Ga0068856_100067557 3300005614 Bacteria 3533
5 Ga0105241_10004824 3300009174 Bacteria 9939
6 Ga0207647_10005261 3300025904 Bacteria 9524
7 Ga0207695_10058159 3300025913 Bacteria 4014
8 Ga0207671_10000608 3300025914 Bacteria 47424
9 Ga0207694_10011424 3300025924 Bacteria 6702
10 Ga0207640_10025295 3300025981 Bacteria 3591
11 Ga0307517_10004425 3300028786 Bacteria 21587
12 Ga0307511_10044114 3300030521 Bacteria 3710
13 Ga0307508_10008188 3300031616 Bacteria 9692
14 Ga0307516_10083982 3300031730 Bacteria 3024
15 Ga0395900_0049330 3300037418 Bacteria 4337
16 Ga0395900_0060601 3300037418 Bacteria 3894
17 Ga0395898_0001560 3300037466 Bacteria 31414
18 Ga0395898_0002401 3300037466 Bacteria 22243
19 Ga0395898_0005028 3300037466 Bacteria 14341
20 Ga0395901_0112281 3300038443 Bacteria 2862
21 Ga0451837_1129583 3300041494 Bacteria 3647
22 Ga0451853_0719336 3300041512 Bacteria 3720
23 Ga0439457_000260 3300042014 Bacteria 14427
24 Ga0466969_0002851 3300044656 Bacteria 9237
25 Ga0466969_0015239 3300044656 Bacteria 4030
26 Ga0466966_0021444 3300044684 Bacteria 4242
27 Ga0466961_0003991 3300044693 Bacteria 9232
28 Ga0466961_0005964 3300044693 Bacteria 7720
29 Ga0466963_0006868 3300044694 Bacteria 6771
30 Ga0466964_0003473 3300044706 Bacteria 5752
31 Ga0466968_0003367 3300044735 Bacteria 5907
32 Ga0466970_0000897 3300044765 Bacteria 14380
33 Ga0466970_0009386 3300044765 Bacteria 4945
34 Ga0466957_0000029 3300044842 Bacteria 52517
35 Ga0466959_0019074 3300045049 Bacteria 5041
36 Ga0466958_0000967 3300045836 Bacteria 12976
37 Ga0466967_0001809 3300045976 Bacteria 12840
38 Ga0495592_0007247 3300046454 Bacteria 8301
39 Ga0495603_0000865 3300046455 Bacteria 17340
40 Ga0495603_0007455 3300046455 Bacteria 6580
41 Ga0495651_0000677 3300046462 Bacteria 26459
42 Ga0495582_0019465 3300046473 Bacteria 3712
43 Ga0495605_0002462 3300046474 Bacteria 11448
44 Ga0495605_0006418 3300046474 Bacteria 6766
45 Ga0495594_0012211 3300046499 Bacteria 4472
46 Ga0495607_0012508 3300046501 Bacteria 5599
47 Ga0495606_0002084 3300046507 Bacteria 24406
48 Ga0495606_0011310 3300046507 Bacteria 7292
49 Ga0495616_0007093 3300046513 Bacteria 6729
50 Ga0495616_0009852 3300046513 Bacteria 5561
51 Ga0495616_0015232 3300046513 Bacteria 4278
52 Ga0495620_0003894 3300046515 Bacteria 8511
53 Ga0495620_0010456 3300046515 Bacteria 4896
54 Ga0495628_0002366 3300046516 Bacteria 17019
55 Ga0495631_0009921 3300046518 Bacteria 4734
56 Ga0495631_0014523 3300046518 Bacteria 3799
57 Ga0495643_0001950 3300046522 Bacteria 17355
58 Ga0495643_0006696 3300046522 Bacteria 7545
59 Ga0495648_0026164 3300046524 Bacteria 3932
60 Ga0495652_0002390 3300046529 Bacteria 19409
61 Ga0495654_0039318 3300046530 Bacteria 2362
62 Ga0495640_0009703 3300046533 Bacteria 7484
63 Ga0495668_0006837 3300046616 Bacteria 7394
64 Ga0495668_0011389 3300046616 Bacteria 5328
65 Ga0495611_0023062 3300046648 Bacteria 2697
66 Ga0495625_0008309 3300046660 Bacteria 8872
67 Ga0495625_0028469 3300046660 Bacteria 4190
68 Ga0495657_0005953 3300046675 Bacteria 9580
69 Ga0495657_0015038 3300046675 Bacteria 5674
70 Ga0495613_0007748 3300046689 Bacteria 7990
71 Ga0495613_0031963 3300046689 Bacteria 3909
72 Ga0495589_0002770 3300046794 Bacteria 9697
73 Ga0495581_0026012 3300047315 Bacteria 3394
74 Ga0495636_0001067 3300047318 Bacteria 10302
75 Ga0495636_0004472 3300047318 Bacteria 5475
76 Ga0495676_0014128 3300047321 Bacteria 7150
77 Ga0495676_0020136 3300047321 Bacteria 5863
78 Ga0495683_0001924 3300047323 Bacteria 12956
79 Ga0495687_001037 3300047443 Bacteria 27583
80 Ga0495687_001287 3300047443 Bacteria 23571
81 Ga0495675_0015208 3300047444 Bacteria 4865
82 Ga0495685_000223 3300047447 Bacteria 19334
83 Ga0495685_000818 3300047447 Bacteria 9509
84 Ga0495685_004183 3300047447 Bacteria 4647
85 Ga0495685_014115 3300047447 Bacteria 2712
86 Ga0495681_0000654 3300047470 Bacteria 26355
87 Ga0495686_0016804 3300047472 Bacteria 4949
88 Ga0495614_0007167 3300048089 Bacteria 4972
89 Ga0495626_0009103 3300048091 Bacteria 5387
90 Ga0495626_0016551 3300048091 Bacteria 3742
91 Ga0495678_010981 3300049459 Bacteria 4360
92 Ga0501033_0007809 3300049570 Bacteria 8290
93 Ga0501033_0010969 3300049570 Bacteria 6943
94 Ga0501036_0001103 3300049572 Bacteria 20516
95 Ga0501036_0003533 3300049572 Bacteria 12508
96 Ga0501036_0004577 3300049572 Bacteria 11168
97 Ga0501044_0026429 3300049823 Bacteria 6142
98 Ga0500578_0015782 3300053086 Bacteria 4847
99 Ga0500628_001658 3300053129 Bacteria 3772
100 Ga0500633_0006386 3300053160 Bacteria 2888
101 Ga0466962_0000258 3300061719 Bacteria 22413
102 Ga0466962_0000515 3300061719 Bacteria 16893
103 8048383860 8048379754 Bacteria 11877923
104 2554260029 2554235005 Bacteria 6457341
105 2554260064 2554235005 Bacteria 6457341
106 2616698636 2616644814 Bacteria 11555299
107 2785339083 2784746763 Bacteria 9783172
108 2793981109 2791355406 Bacteria 11364898
109 2793981731 2791355406 Bacteria 11364898
110 2808916193 2808606375 Bacteria 9466072
111 2811843735 2808606982 Bacteria 7791042
112 2811845523 2808606982 Bacteria 7791042
113 2812483145 2811994917 Bacteria 7761064
114 2819745038 2818991472 Bacteria 10089953
115 2863409791 2863404153 Bacteria 9672205
116 2867347961 2867346516 Bacteria 7608576
117 2867478606 2867475112 Bacteria 6909112
118 2912723790 2912715099 Bacteria 9460473
119 2912758262 2912757875 Bacteria 7940295
120 2947224792 2947224130 Bacteria 9938529
121 2997453499 2997451912 Bacteria 8492419
122 2997601302 2997600082 Bacteria 9896405
123 2997603884 2997600082 Bacteria 9896405
124 2997604459 2997600082 Bacteria 9896405
125 3006399701 3006393351 Bacteria 6615579
126 3006487381 3006486233 Bacteria 8157040
127 3006499133 3006493962 Bacteria 8825450
128 8008581241 8008574985 Bacteria 7815457
129 8025537365 8025530807 Bacteria 8495698
130 8047894065 8047893842 Bacteria 11723082
131 8047897376 8047893842 Bacteria 11723082
132 8048128281 8048127548 Bacteria 11053136
133 8048130099 8048127548 Bacteria 11053136
134 8048131616 8048127548 Bacteria 11053136
135 8048361569 8048356638 Bacteria 11044339
136 8048365085 8048356638 Bacteria 11044339
137 8048371082 8048369669 Bacteria 11666822
138 8048374363 8048369669 Bacteria 11666822
139 8048379883 8048379754 Bacteria 11877923
140 8054164614 8054160619 Bacteria 7783213
141 8054165399 8054160619 Bacteria 7783213
142 rootL2_10034152
143 JGI25160J50197_1012312
144 Ga0068855_100015234
145 Ga0068856_100067557
146 Ga0105241_10004824
147 Ga0207647_10005261
148 Ga0207695_10058159
149 Ga0207671_10000608
150 Ga0207694_10011424
151 Ga0207640_10025295
152 Ga0307517_10004425
153 Ga0307511_10044114
154 Ga0307508_10008188
155 Ga0307516_10083982
156 Ga0395900_0049330
157 Ga0395900_0060601
158 Ga0395898_0001560
159 Ga0395898_0002401
160 Ga0395898_0005028
161 Ga0395901_0112281
162 Ga0451837_1129583
163 Ga0451853_0719336
164 Ga0439457_000260
165 Ga0466969_0002851
166 Ga0466969_0015239
167 Ga0466966_0021444
168 Ga0466961_0003991
169 Ga0466961_0005964
170 Ga0466963_0006868
171 Ga0466964_0003473
172 Ga0466968_0003367
173 Ga0466970_0000897
174 Ga0466970_0009386
175 Ga0466957_0000029
176 Ga0466959_0019074
177 Ga0466958_0000967
178 Ga0466967_0001809
179 Ga0495592_0007247
180 Ga0495603_0000865
181 Ga0495603_0007455
182 Ga0495651_0000677
183 Ga0495582_0019465
184 Ga0495605_0002462
185 Ga0495605_0006418
186 Ga0495594_0012211
187 Ga0495607_0012508
188 Ga0495606_0002084
189 Ga0495606_0011310
190 Ga0495616_0007093
191 Ga0495616_0009852
192 Ga0495616_0015232
193 Ga0495620_0003894
194 Ga0495620_0010456
195 Ga0495628_0002366
196 Ga0495631_0009921
197 Ga0495631_0014523
198 Ga0495643_0001950
199 Ga0495643_0006696
200 Ga0495648_0026164
201 Ga0495652_0002390
202 Ga0495654_0039318
203 Ga0495640_0009703
204 Ga0495668_0006837
205 Ga0495668_0011389
206 Ga0495611_0023062
207 Ga0495625_0008309
208 Ga0495625_0028469
209 Ga0495657_0005953
210 Ga0495657_0015038
211 Ga0495613_0007748
212 Ga0495613_0031963
213 Ga0495589_0002770
214 Ga0495581_0026012
215 Ga0495636_0001067
216 Ga0495636_0004472
217 Ga0495676_0014128
218 Ga0495676_0020136
219 Ga0495683_0001924
220 Ga0495687_001037
221 Ga0495687_001287
222 Ga0495675_0015208
223 Ga0495685_000223
224 Ga0495685_000818
225 Ga0495685_004183
226 Ga0495685_014115
227 Ga0495681_0000654
228 Ga0495686_0016804
229 Ga0495614_0007167
230 Ga0495626_0009103
231 Ga0495626_0016551
232 Ga0495678_010981
233 Ga0501033_0007809
234 Ga0501033_0010969
235 Ga0501036_0001103
236 Ga0501036_0003533
237 Ga0501036_0004577
238 Ga0501044_0026429
239 Ga0500578_0015782
240 Ga0500628_001658
241 Ga0500633_0006386
242 Ga0466962_0000258
243 Ga0466962_0000515
244 8048383860
245 2554260029
246 2554260064
247 2616698636
248 2785339083
249 2793981109
250 2793981731
251 2808916193
252 2811843735
253 2811845523
254 2812483145
255 2819745038
256 2863409791
257 2867347961
258 2867478606
259 2912723790
260 2912758262
261 2947224792
262 2997453499
263 2997601302
264 2997603884
265 2997604459
266 3006399701
267 3006487381
268 3006499133
269 8008581241
270 8025537365
271 8047894065
272 8047897376
273 8048128281
274 8048130099
275 8048131616
276 8048361569
277 8048365085
278 8048371082
279 8048374363
280 8048379883
281 8054164614
282 8054165399

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF17203

sCache_3_2

Single cache domain 3

71

208

0.96

PF07228

SpoIIE

Stage II sporulation protein E (SpoIIE)

661

868

0.93

PF08448

PAS_4

PAS fold

255

352

0.92

PF01590

GAF

GAF domain

525

606

0.86

PF13581

HATPase_c_2

Histidine kinase-like ATPase domain

880

990

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
8biy-assembly1.cif.gz_C citrate-free extracytoplasmic pas domain mutant r93a of sensor histidine kinase cita from geobacillus thermodenitrificans 0.9409 55 174
8biy-assembly3.cif.gz_D citrate-free extracytoplasmic pas domain mutant r93a of sensor histidine kinase cita from geobacillus thermodenitrificans 0.9288 57 176
2v9a-assembly1.cif.gz_A structure of citrate-free periplasmic domain of sensor histidine kinase cita 0.9196 55 173
8bgb-assembly5.cif.gz_EEE structure of the citrate-bound extracytoplasmic pas domain of histidine kinase cita from geobacillus thermodenitrificans 0.9093 57 176
8biy-assembly1.cif.gz_C citrate-free extracytoplasmic pas domain mutant r93a of sensor histidine kinase cita from geobacillus thermodenitrificans 0.9048 55 174
ID Description Score Start End Superfamily
2v9aA00 Alpha Beta;2-Layer Sandwich;Beta-Lactamase;PAS domain 0.9196 55 173 3.30.450.20
2j80B00 Alpha Beta;2-Layer Sandwich;Beta-Lactamase;PAS domain 0.8736 55 171 3.30.450.20
2v9aA00 Alpha Beta;2-Layer Sandwich;Beta-Lactamase;PAS domain 0.8544 55 173 3.30.450.20
3by9B02 Alpha Beta;2-Layer Sandwich;Beta-Lactamase;PAS domain 0.8385 59 168 3.30.450.20
af_P71568_133_255_3.30.565.10 Alpha Beta;2-Layer Sandwich;Heat Shock Protein 90;Histidine kinase-like ATPase, C-terminal domain 0.8371 761 879 3.30.565.10
ID Description Score Start End GO Terms
AF-A0A7K2MEB4-F1-model_v4 Histidine kinase 0.9233 761 880 GO:0004674
AF-A0A2M8M6C8-F1-model_v4 PAS sensor protein 0.9072 752 881 GO:0004674
AF-A0A6B1KP06-F1-model_v4 Protein phosphatase 0.9071 756 880 GO:0004674
AF-A0A2L2MM08-F1-model_v4 deleted 0.9054 752 881
AF-A0A1S6RBT4-F1-model_v4 deleted 0.9022 538 881

Map