F184257

General Info

Members Datasets Scaffolds Average Seq Length
141 114 100 520

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|8016254467|8016256536
Length 586
Sequence ETTRYDVVIVGGGHNALVAAAYLARAGRSVVILEKQDAVGGAAVSERPWPGVDARLSRYSYLVSLLPRRIIDDLGLRLELRRRRYSSYTPDPADPTRGILIDTADAEATAASFARTLGDAEEARRFAAFGERLLPLARAVFPTMTEPLPTADEVRAQLDDDELWEAVTERPLGQLLRASLESDLVRGIALTDGLIGTFASSDDPSLAQNRCFLYHVIGGGTGDWDVPVGGMGAVTAELERAARDAGAEIRTGVEVISVSPSGEVHAVTGRAEVYVGDVVLSGVGRAVLARLLTAGGAPTAAPEPEGAQIKVNMLLSRLPRLRDTSVSPEAAFSGTFHVNETMTQLDAAYVTASAGLVPAPLPAEIYCHSLTDPSILGDELRASGAQTLTLFGLQVPHRLIDGEDPVAAGARLLAEAQRSLDSVLAEPLRDCIMAAPDGRLCIEARTTTDLERSLGMLGGDIFHGGLSWPWREGDGGGRGSGGGGAGAGDGAGTGADARGSGGGTAHGAGAADGAGADRGGAAHGAGAGAGSVGAGLGPAERWGVETGHARVLVCGSSARRGGAVSGIGGQNAAMAALEILGRPGRG

Samples

Sample ID Description Type Environment
1 2523231044 Gordonia rhizosphera NBRC 16068 Isolate Rhizosphere
2 2585428157 Microbacterium sp. CF335 Isolate Rhizosphere
3 2643221549 Agromyces sp. Root1464 Isolate Unclassified
4 2643221566 Microbacterium sp. Root166 Isolate Unclassified
5 2643221567 Phycicoccus sp. Root563 Isolate Unclassified
6 2643221575 Microbacterium sp. Root61 Isolate Unclassified
7 2643221597 Microbacterium sp. Root180 Isolate Unclassified
8 2643221624 Phycicoccus sp. Root101 Isolate Unclassified
9 2643221711 Terrabacter sp. Root85 Isolate Unclassified
10 2721755702 Agromyces sp. AR33 Isolate Rhizosphere
11 2744054611 Aldersonia kunmingensis DSM 45001 Isolate Rhizosphere
12 2757320536 Microbacterium sp. NFIX05 Isolate Unclassified
13 2773857758 Microbacterium chocolatum 1320 Isolate Unclassified
14 2773857759 Microbacterium sp. 1294 Isolate Unclassified
15 2773857763 Microbacterium sp. SAI-030 Isolate Unclassified
16 2808606306 Microbacterium sp. SLBN-146 Isolate Unclassified
17 2808606365 Phycicoccus sp. SLBN-51 Isolate Unclassified
18 2808606368 Microbacterium sp. SLBN-1 Isolate Unclassified
19 2808606447 Microbacterium sp. HAR-UPW-R2A-48 Isolate Unclassified
20 2811994872 Microbacterium sp. MU4Y-5-1 Isolate Unclassified
21 2811994882 Terrabacter sp. SLBN-196 Isolate Unclassified
22 2818991458 Terrabacter sp. 3211 Isolate Rhizosphere
23 2818991462 Terrabacter sp. 3264 Isolate Rhizosphere
24 2818991469 Terrabacter lapilli 3265 Isolate Rhizosphere
25 2821268502 Microbacterium sp. YT0620BN Isolate Unclassified
26 2833709550 Microbacterium sp. 3290 Isolate Rhizosphere
27 2852632344 Microbacterium sp. AK009 Isolate Rhizosphere
28 2870628048 Microbacterium thalassium DSM 12511 Isolate Rhizosphere
29 2904509784 Microbacterium sp. 1676 Isolate Rhizosphere
30 2908678064 Microbacterium sp. 1518 Isolate Rhizosphere
31 2919069694 Microbacterium sp. 1154 Isolate Unclassified
32 2919446982 Phycicoccus sp. 3266 Isolate Rhizosphere
33 2974294766 Microbacterium proteolyticum SORGH_AS 209 Isolate Unclassified
34 2974324384 Microbacterium sp. SORGH_AS 344 Isolate Unclassified
35 2977228692 Microbacterium sp. SORGH_AS 421 Isolate Unclassified
36 2977236895 Microbacterium testaceum SORGH_AS 426 Isolate Unclassified
37 2977264416 Microbacterium testaceum SORGH_AS 594 Isolate Unclassified
38 2984542743 Microbacterium sp. SORGH_AS454 Isolate Aerial Root
39 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
40 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
41 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
42 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
43 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
44 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
45 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
46 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
47 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
48 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
49 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
50 3300013250 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Metagenome Rhizosphere
51 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
52 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
53 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
54 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
60 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
61 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
62 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
63 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
64 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
65 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
66 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
67 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
68 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
69 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
70 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
71 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
72 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
73 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
74 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
75 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
76 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
77 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
78 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
79 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
80 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
81 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
82 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
83 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
84 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
85 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
86 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
87 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
88 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
90 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
91 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
92 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
94 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
95 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
96 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
98 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
99 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
100 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
101 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
102 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
103 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
104 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
105 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
106 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
107 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
108 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
109 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
110 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
111 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
112 8016254467 Microbacterium sp. SLBN-111 (version 3) Isolate Rhizosphere
113 8045830549 Microbacterium yannicii DSM 23203 Isolate Unclassified
114 8055037949 Leucobacter rhizosphaerae H25R-14 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 69.5
Metatranscriptomes 1.42
Isolates 29.08

Biome Distribution

Category Percentage (%)
Aerial Root 0.71
Bulb 0
Endosphere 2.84
Nodule 0
Rhizoplane 9.22
Rhizosphere 46.1
Stem 0
Stem Tuber 0
Unclassified 41.13

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0006562J51391_1052407 3300003578 Bacteria 14380
2 Ga0070658_10000745 3300005327 Bacteria 27934
3 Ga0070660_100036760 3300005339 Bacteria 3711
4 Ga0070660_100084484 3300005339 Bacteria 2495
5 Ga0070659_100028491 3300005366 Bacteria 4313
6 Ga0068855_100016714 3300005563 Bacteria 8823
7 Ga0068857_100038386 3300005577 Bacteria 4242
8 Ga0075363_100052116 3300006048 Bacteria 2184
9 Ga0075367_10002964 3300006178 Bacteria 7935
10 Ga0157371_10000447 3300013102 Bacteria 50553
11 Ga0157370_10046307 3300013104 Bacteria 4170
12 Ga0157369_10161703 3300013105 Bacteria 2364
13 Ga0171462_1002 3300013250 Bacteria 1052134
14 Ga0157372_10091856 3300013307 Bacteria 3452
15 Ga0206353_10761803 3300020082 Bacteria 2349
16 Ga0213875_10011537 3300021388 Bacteria 4395
17 Ga0207705_10000001 3300025909 Bacteria 2061880
18 Ga0207657_10043076 3300025919 Bacteria 3979
19 Ga0207657_10088220 3300025919 Bacteria 2593
20 Ga0207709_10002709 3300025935 Bacteria 10945
21 Ga0207667_10043629 3300025949 Bacteria 4758
22 Ga0207674_10022517 3300026116 Bacteria 6765
23 Ga0307406_10000101 3300031901 Bacteria 49370
24 Ga0395900_0033660 3300037418 Bacteria 5274
25 Ga0395900_0109204 3300037418 Bacteria 2842
26 Ga0395898_0009579 3300037466 Bacteria 10172
27 Ga0436364_1232180 3300037853 Bacteria 5047
28 Ga0395901_0051912 3300038443 Bacteria 4262
29 Ga0395901_0088084 3300038443 Bacteria 3246
30 Ga0436365_0115066 3300039437 Bacteria 10278
31 Ga0466965_0000004 3300044683 Bacteria 229348
32 Ga0466966_0051125 3300044684 Bacteria 2628
33 Ga0466967_0057558 3300045976 Bacteria 3432
34 Ga0496100_0027216 3300048903 Bacteria 3514
35 Ga0496101_0001726 3300048904 Bacteria 13099
36 Ga0496102_0000908 3300048905 Bacteria 28014
37 Ga0496104_0009976 3300048907 Bacteria 8478
38 Ga0496104_0294646 3300048907 Bacteria 1535
39 Ga0496105_0007926 3300048908 Bacteria 8253
40 Ga0496107_0029848 3300048910 Bacteria 3883
41 Ga0496108_0029302 3300048911 Bacteria 4557
42 Ga0496108_0166523 3300048911 Bacteria 1906
43 Ga0496109_0010895 3300048912 Bacteria 7786
44 Ga0496113_0018891 3300048916 Bacteria 4811
45 Ga0496114_0010391 3300048917 Bacteria 7407
46 Ga0496115_0016606 3300048918 Bacteria 5609
47 Ga0496117_0000239 3300048920 Bacteria 104054
48 Ga0496117_0000786 3300048920 Bacteria 49772
49 Ga0496117_0005387 3300048920 Bacteria 13471
50 Ga0496118_0027431 3300048921 Bacteria 4819
51 Ga0496119_0000621 3300048922 Bacteria 47863
52 Ga0496119_0002129 3300048922 Bacteria 22277
53 Ga0496119_0005408 3300048922 Bacteria 12267
54 Ga0496119_0013366 3300048922 Bacteria 6551
55 Ga0496119_0013574 3300048922 Bacteria 6470
56 Ga0496119_0064427 3300048922 Bacteria 2176
57 Ga0496120_0000948 3300048923 Bacteria 39668
58 Ga0496120_0017927 3300048923 Bacteria 4574
59 Ga0496120_0080679 3300048923 Bacteria 1763
60 Ga0496120_0087124 3300048923 Bacteria 1677
61 Ga0496122_0000022 3300048925 Bacteria 388704
62 Ga0496122_0000095 3300048925 Bacteria 200509
63 Ga0496122_0009944 3300048925 Bacteria 9908
64 Ga0496122_0019882 3300048925 Bacteria 6106
65 Ga0496122_0071190 3300048925 Bacteria 2479
66 Ga0496123_0000016 3300048926 Bacteria 424330
67 Ga0496123_0000100 3300048926 Bacteria 170019
68 Ga0496123_0032205 3300048926 Bacteria 3801
69 Ga0496124_0006698 3300048927 Bacteria 12471
70 Ga0496124_0010334 3300048927 Bacteria 9469
71 Ga0496125_0000326 3300048928 Bacteria 91890
72 Ga0496125_0011716 3300048928 Bacteria 8743
73 Ga0496125_0014933 3300048928 Bacteria 7542
74 Ga0496125_0045406 3300048928 Bacteria 3697
75 Ga0496126_0132795 3300048929 Bacteria 2149
76 Ga0501031_0000401 3300049568 Bacteria 25310
77 Ga0501032_0049005 3300049569 Bacteria 2851
78 Ga0501033_0011213 3300049570 Bacteria 6864
79 Ga0501036_0022458 3300049572 Bacteria 5307
80 Ga0501038_0007365 3300049574 Bacteria 10152
81 Ga0501038_0033157 3300049574 Bacteria 4549
82 Ga0501040_0005282 3300049576 Bacteria 8352
83 Ga0501041_0001676 3300049577 Bacteria 12402
84 Ga0501042_0024293 3300049578 Bacteria 4250
85 Ga0501047_0104139 3300049581 Bacteria 2718
86 Ga0501048_0002532 3300049582 Bacteria 13981
87 Ga0501068_0060184 3300049584 Bacteria 2306
88 Ga0501070_0001338 3300049586 Bacteria 22016
89 Ga0501075_0034472 3300049591 Bacteria 3769
90 Ga0501076_0001924 3300049592 Bacteria 14183
91 Ga0501077_0041463 3300049593 Bacteria 2930
92 Ga0501080_0062047 3300049742 Bacteria 3479
93 Ga0501044_0087185 3300049823 Bacteria 3153
94 Ga0501045_0000468 3300049824 Bacteria 25084
95 nmdc:mga06z11_105289_c1 3300050494 Bacteria 1554
96 nmdc:mga06r32_831_c5 3300050510 Bacteria 7146
97 Ga0500568_0001034 3300053139 Bacteria 19025
98 Ga0501084_0079482 3300054114 Bacteria 2748
99 Ga0501082_0055940 3300060353 Bacteria 3398
100 Ga0530510_0014559 3300061734 Bacteria 5549

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048907 Ga0496104_0294646 Ga0496104_0294646_13_1305 420
2 3300025919 Ga0207657_10043076 Ga0207657_100430762 476
3 3300048903 Ga0496100_0027216 Ga0496100_0027216_1150_2706 484
4 3300048904 Ga0496101_0001726 Ga0496101_0001726_10733_12289 484
5 3300048907 Ga0496104_0009976 Ga0496104_0009976_5176_6732 484
6 3300005339 Ga0070660_100036760 Ga0070660_1000367601 485
7 3300005366 Ga0070659_100028491 Ga0070659_1000284914 485
8 3300050510 nmdc:mga06r32_831_c5 nmdc:mga06r32_831_c5_164_1741 486
9 3300050494 nmdc:mga06z11_105289_c1 nmdc:mga06z11_105289_c1_66_1544 488
10 3300048905 Ga0496102_0000908 Ga0496102_0000908_19809_21362 490
11 3300048923 Ga0496120_0087124 Ga0496120_0087124_164_1666 490
12 3300048922 Ga0496119_0005408 Ga0496119_0005408_223_1941 492
13 3300048928 Ga0496125_0000326 Ga0496125_0000326_75684_77276 494
14 3300048922 Ga0496119_0002129 Ga0496119_0002129_19023_20570 500
15 iso_pu_bacteria 2523231044 2523384192 501
16 3300021388 Ga0213875_10011537 Ga0213875_100115373 503
17 3300037853 Ga0436364_1232180 Ga0436364_1232180_427_1950 503
18 3300039437 Ga0436365_0115066 Ga0436365_0115066_8425_9948 503
19 iso_pu_bacteria 2643221711 2644608042 504
20 iso_pu_bacteria 2811994882 2812372981 504
21 iso_pu_bacteria 2818991458 2819664835 504
22 iso_pu_bacteria 2818991462 2819689508 504
23 iso_pu_bacteria 2818991469 2819726948 504
24 iso_pu_bacteria 2643221567 2643853166 505
25 iso_pu_bacteria 2643221624 2644137149 505
26 iso_pu_bacteria 2919446982 2919450795 505
27 iso_pu_bacteria 2808606365 2808874574 506
28 3300025935 Ga0207709_10002709 Ga0207709_1000270910 507
29 3300044684 Ga0466966_0051125 Ga0466966_0051125_952_2496 508
30 3300049568 Ga0501031_0000401 Ga0501031_0000401_6463_8004 508
31 3300049572 Ga0501036_0022458 Ga0501036_0022458_2130_3671 508
32 3300049576 Ga0501040_0005282 Ga0501040_0005282_6396_7937 508
33 3300049577 Ga0501041_0001676 Ga0501041_0001676_10621_12162 508
34 3300049578 Ga0501042_0024293 Ga0501042_0024293_1754_3295 508
35 3300049582 Ga0501048_0002532 Ga0501048_0002532_5648_7189 508
36 3300049584 Ga0501068_0060184 Ga0501068_0060184_633_2174 508
37 3300049591 Ga0501075_0034472 Ga0501075_0034472_1662_3203 508
38 3300049592 Ga0501076_0001924 Ga0501076_0001924_9903_11444 508
39 3300049593 Ga0501077_0041463 Ga0501077_0041463_1224_2765 508
40 3300049742 Ga0501080_0062047 Ga0501080_0062047_796_2337 508
41 3300049824 Ga0501045_0000468 Ga0501045_0000468_370_1911 508
42 3300054114 Ga0501084_0079482 Ga0501084_0079482_415_1956 508
43 3300060353 Ga0501082_0055940 Ga0501082_0055940_1608_3149 508
44 3300061734 Ga0530510_0014559 Ga0530510_0014559_1217_2758 508
45 3300005339 Ga0070660_100084484 Ga0070660_1000844842 509
46 3300005577 Ga0068857_100038386 Ga0068857_1000383862 509
47 3300020082 Ga0206353_10761803 Ga0206353_107618031 509
48 3300025919 Ga0207657_10088220 Ga0207657_100882202 509
49 3300026116 Ga0207674_10022517 Ga0207674_100225172 509
50 3300037418 Ga0395900_0033660 Ga0395900_0033660_796_2370 509
51 3300037418 Ga0395900_0109204 Ga0395900_0109204_133_1683 509
52 3300037466 Ga0395898_0009579 Ga0395898_0009579_2321_3871 509
53 3300038443 Ga0395901_0051912 Ga0395901_0051912_2085_3635 509
54 3300038443 Ga0395901_0088084 Ga0395901_0088084_814_2388 509
55 3300045976 Ga0466967_0057558 Ga0466967_0057558_198_1742 509
56 3300048920 Ga0496117_0000239 Ga0496117_0000239_61761_63350 510
57 3300048925 Ga0496122_0000095 Ga0496122_0000095_85637_87244 510
58 3300048925 Ga0496122_0009944 Ga0496122_0009944_2676_4298 510
59 3300048926 Ga0496123_0000100 Ga0496123_0000100_82748_84355 510
60 3300048926 Ga0496123_0032205 Ga0496123_0032205_112_1734 510
61 3300048927 Ga0496124_0006698 Ga0496124_0006698_8042_9649 510
62 3300048928 Ga0496125_0014933 Ga0496125_0014933_2596_4203 510
63 3300048916 Ga0496113_0018891 Ga0496113_0018891_68_1651 511
64 3300049569 Ga0501032_0049005 Ga0501032_0049005_889_2436 512
65 3300049570 Ga0501033_0011213 Ga0501033_0011213_4384_5931 512
66 3300049574 Ga0501038_0007365 Ga0501038_0007365_8511_10058 512
67 3300049574 Ga0501038_0033157 Ga0501038_0033157_323_1870 512
68 3300049581 Ga0501047_0104139 Ga0501047_0104139_349_1896 512
69 3300049823 Ga0501044_0087185 Ga0501044_0087185_620_2167 512
70 3300053139 Ga0500568_0001034 Ga0500568_0001034_10326_11876 512
71 iso_pu_bacteria 2643221549 2643766928 512
72 3300044683 Ga0466965_0000004 Ga0466965_0000004_26499_28049 513
73 iso_pu_bacteria 2773857759 2774383081 513
74 3300005327 Ga0070658_10000745 Ga0070658_1000074515 514
75 3300005563 Ga0068855_100016714 Ga0068855_1000167145 514
76 3300013104 Ga0157370_10046307 Ga0157370_100463071 514
77 3300025909 Ga0207705_10000001 Ga0207705_100000011119 514
78 3300025949 Ga0207667_10043629 Ga0207667_100436291 514
79 3300048920 Ga0496117_0000786 Ga0496117_0000786_48044_49633 514
80 3300048922 Ga0496119_0013366 Ga0496119_0013366_588_2177 514
81 3300048923 Ga0496120_0017927 Ga0496120_0017927_2844_4433 514
82 3300048925 Ga0496122_0019882 Ga0496122_0019882_65_1654 514
83 3300048928 Ga0496125_0045406 Ga0496125_0045406_643_2232 514
84 3300013102 Ga0157371_10000447 Ga0157371_1000044710 515
85 iso_pu_bacteria 2643221575 2643886555 515
86 iso_pu_bacteria 2811994872 2812324327 515
87 3300013105 Ga0157369_10161703 Ga0157369_101617032 516
88 3300013307 Ga0157372_10091856 Ga0157372_100918561 516
89 3300048910 Ga0496107_0029848 Ga0496107_0029848_2031_3608 516
90 3300048911 Ga0496108_0166523 Ga0496108_0166523_308_1885 516
91 3300048917 Ga0496114_0010391 Ga0496114_0010391_5156_6733 516
92 3300048918 Ga0496115_0016606 Ga0496115_0016606_2097_3674 516
93 3300048923 Ga0496120_0080679 Ga0496120_0080679_38_1615 516
94 3300006048 Ga0075363_100052116 Ga0075363_1000521162 517
95 3300006178 Ga0075367_10002964 Ga0075367_100029646 517
96 3300048922 Ga0496119_0064427 Ga0496119_0064427_529_2115 517
97 iso_pu_bacteria 2585428157 2588109059 517
98 iso_pu_bacteria 2744054611 2744953460 517
99 iso_pu_bacteria 2773857758 2774381137 517
100 iso_pu_bacteria 2904509784 2904510983 517
101 iso_pu_bacteria 2908678064 2908680277 517
102 iso_pu_bacteria 2919069694 2919072770 517
103 iso_pu_bacteria 2974294766 2974296325 517
104 iso_pu_bacteria 2974324384 2974327442 517
105 iso_pu_bacteria 2977228692 2977229088 517
106 iso_pu_bacteria 2977236895 2977238877 517
107 iso_pu_bacteria 2977264416 2977267819 517
108 iso_pu_bacteria 2984542743 2984543339 517
109 iso_pu_bacteria 2643221597 2643996670 518
110 iso_pu_bacteria 2721755702 2723640224 518
111 iso_pu_bacteria 2808606447 2809228292 518
112 iso_pu_bacteria 2852632344 2852634956 518
113 iso_pu_bacteria 8055037949 8055038171 518
114 3300003578 Ga0006562J51391_1052407 Ga0006562J51391_10524072 519
115 3300013250 Ga0171462_1002 Ga0171462_1002904 519
116 3300031901 Ga0307406_10000101 Ga0307406_1000010121 519
117 3300048908 Ga0496105_0007926 Ga0496105_0007926_1271_2860 519
118 3300048911 Ga0496108_0029302 Ga0496108_0029302_2857_4446 519
119 3300048912 Ga0496109_0010895 Ga0496109_0010895_4508_6097 519
120 3300048920 Ga0496117_0005387 Ga0496117_0005387_4831_6432 519
121 3300048921 Ga0496118_0027431 Ga0496118_0027431_219_1805 519
122 3300048922 Ga0496119_0000621 Ga0496119_0000621_7482_9083 519
123 3300048922 Ga0496119_0013574 Ga0496119_0013574_1216_2802 519
124 3300048923 Ga0496120_0000948 Ga0496120_0000948_35808_37394 519
125 3300048925 Ga0496122_0000022 Ga0496122_0000022_91145_92731 519
126 3300048925 Ga0496122_0071190 Ga0496122_0071190_725_2335 519
127 3300048926 Ga0496123_0000016 Ga0496123_0000016_138092_139678 519
128 3300048927 Ga0496124_0010334 Ga0496124_0010334_2725_4311 519
129 3300048928 Ga0496125_0011716 Ga0496125_0011716_4431_6017 519
130 3300048929 Ga0496126_0132795 Ga0496126_0132795_167_1753 519
131 3300049586 Ga0501070_0001338 Ga0501070_0001338_5406_6998 519
132 iso_pu_bacteria 2643221566 2643846589 519
133 iso_pu_bacteria 2757320536 2758227506 519
134 iso_pu_bacteria 2773857763 2774398384 519
135 iso_pu_bacteria 2808606306 2808630133 519
136 iso_pu_bacteria 2808606368 2808883641 519
137 iso_pu_bacteria 2821268502 2821271035 519
138 iso_pu_bacteria 2833709550 2833712054 519
139 iso_pu_bacteria 2870628048 2870631326 519
140 iso_pu_bacteria 8016254467 8016256536 519
141 iso_pu_bacteria 8045830549 8045834054 519

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00890

FAD_binding_2

FAD binding domain

6

45

0.96

PF13450

NAD_binding_8

NAD(P)-binding Rossmann-like domain

9

67

0.9

PF12831

FAD_oxidored

FAD dependent oxidoreductase

6

128

0.7

PF01593

Amino_oxidase

Flavin containing amine oxidoreductase

17

310

0.68

Structural Annotation

Top 5 Hits

ID Description Score Start End
5vj7-assembly1.cif.gz_A ferredoxin nadp oxidoreductase (xfn) 0.9741 7 40
6kod-assembly1.cif.gz_A cu(ii) complex of hocl-induced flavoprotein disulfide reductase rcla c43s mutant from escherichia coli 0.963 4 37
6kyy-assembly2.cif.gz_C cu(ii) complex of hocl-induced flavoprotein disulfide reductase rcla from escherichia coli 0.9613 4 35
4ntc-assembly1.cif.gz_B crystal structure of glit 0.9604 5 35
7mgo-assembly1.cif.gz_A crystal structure of f501h variant of 2-ketopropyl coenzyme m oxidoreductase/carboxylase (2-kpcc) from xanthobacter autotrophicus 0.9456 4 43
ID Description Score Start End Superfamily
4ywoA02 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9943 7 39 3.50.50.60
2bxrB01 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9871 5 41 3.50.50.60
2x3nA01 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.98 5 38 3.50.50.60
3e1tA01 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9766 5 36 3.50.50.60
5l1nB02 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9728 7 39 3.50.50.60
ID Description Score Start End GO Terms
AF-A0A1V3WUW5-F1-model_v4 Oxidoreductase 0.9762 308 517 GO:0005829
AF-A0A519H383-F1-model_v4 NAD(P)/FAD-dependent oxidoreductase 0.9716 1 467 GO:0005829
AF-A0A5C8UPI3-F1-model_v4 NAD(P)/FAD-dependent oxidoreductase 0.9714 2 515 GO:0005829
AF-A0A1V3X8C5-F1-model_v4 Putative oxidoreductase 0.9714 232 517 GO:0005829
AF-A0A1Q4A1V9-F1-model_v4 FAD-dependent oxidoreductase 0.9699 1 515 GO:0005829

Feature Viewer

pLDDT pTM Quality
90.42 0.9 High
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Predicted Structure (AlphaFold2)

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