F184191

General Info

Members Datasets Scaffolds Average Seq Length
141 119 98 384

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2848858292|2848864403
Length 434
Sequence PRTGAAASDRLPLASLLALAMAAFITILTEALPAGLLPQMAQGLGVTEAWVGQTVTIYAAGSLAAAIPLTAATQGVRRRPLLLAAIAGFVVANTVTTFSGSFALTMVARFLAGVSAGLMWALLAGYAARMVPDHQKGRAIAVAMVGTPLALSLGVPAGTFLGALVGWRVCFGIMSALALALMLWVRGALPDFAGQAAGRRLSPGRVFTLAGVRPVLFVVLAFVLAHNILYTYIAPFLAASGMERRTDLALLLFGVASLLGIWIVGALIDGHLRALTLASTGLFGLSTLALGVAGDAPAVVLAAVAAWGLAFGGAATLFQTALARTAGDAADVAQSMLVTAWNTAIAGGGIVGGVLLERLGVGAFAPALLVLLLAALLVVWGARRHGFPPPVDAAGGGEEAAVSVSPCDPAGADAACRAGRSASPDRGTAAASPG

Samples

Sample ID Description Type Environment
1 2501025501 Paraburkholderia silvatlantica PVA5 Isolate Unclassified
2 2510917015 Paraburkholderia silvatlantica PVA5 Isolate Unclassified
3 2554235003 Agrobacterium tumefaciens WRT31 Isolate Rhizosphere
4 2558860242 Agrobacterium fabacearum P4 Isolate Rhizosphere
5 2597489889 Pseudomonas synxantha BG33R Isolate Rhizosphere
6 2597490356 Azospirillum brasilense sp7 Isolate Unclassified
7 2643221693 Rhizobium sp. Root491 Isolate Unclassified
8 2687453601 Serratia plymuthica 3Rp8 Isolate Unclassified
9 2711768156 Atlantibacter hermannii DDE1 Isolate Unclassified
10 2721755523 Delftia sp. HK171 Isolate Unclassified
11 2808606386 Herbaspirillum sp. SJZ099 Isolate Rhizosphere
12 2808606387 Rhizobium sp. SJZ105 Isolate Rhizosphere
13 2808606415 Herbaspirillum sp. SJZ130 Isolate Rhizosphere
14 2808606419 Herbaspirillum sp. SJZ106 Isolate Rhizosphere
15 2818991450 Burkholderia sp. 604 Isolate Unclassified
16 2818991461 Neorhizobium alkalisoli 1225 Isolate Unclassified
17 2842757796 Stenotrophomonas sp. R-72406 Isolate Unclassified
18 2846952575 Azospirillum brasilense sp7 Isolate Unclassified
19 2847085930 Erwinia persicina B64 Isolate Bulb
20 2848858292 Azospirillum brasilense Az39 Isolate Unclassified
21 2852618963 Herbaspirillum sp. SJZ102 Isolate Rhizosphere
22 2858466076 Pectobacterium polaris SS28 Isolate Stem Tuber
23 2858688981 Cupriavidus sp. UYMMa02A Isolate Unclassified
24 2858950400 Achromobacter sp. K91 Isolate Unclassified
25 2899845264 Agrobacterium fabacearum CNPSo 675 Isolate Unclassified
26 2904479285 Comamonas sediminis 4487 Isolate Rhizosphere
27 2908669403 Pantoea coffeiphila 1480 Isolate Rhizosphere
28 2913036834 Pseudomonas viciae 11K1 Isolate Rhizosphere
29 2919125081 Pseudomonas psychrotolerans 1545 Isolate Rhizosphere
30 2919481497 Pseudomonas brassicacearum 3432 Isolate Unclassified
31 2919501602 Pseudomonas alcaliphila 3512 Isolate Unclassified
32 2926063275 Pseudomonas sp. 3400 Isolate Unclassified
33 2926760298 Agrobacterium tumefaciens SLBN-170 Isolate Rhizosphere
34 2939607340 Leclercia sp. 1548 Isolate Rhizosphere
35 2964636051 Sinorhizobium meliloti USDA1594 Isolate Nodule
36 2984504281 Pseudomonas psychrotolerans SORGH_AS201 Isolate Aerial Root
37 2989771324 Rhizobium rhizolycopersici DBTS2 Isolate Rhizosphere
38 2996310559 Mesorhizobium zhangyense CGMCC 1.15528 Isolate Unclassified
39 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
40 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
41 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
42 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
43 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
44 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
45 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
46 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
47 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
48 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
49 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
50 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
51 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
52 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
53 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
54 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
55 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
56 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
57 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
58 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
59 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
60 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
61 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
62 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
63 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
64 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
69 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
70 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
71 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
72 3300042009 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0220FE14Z071817_5348 Metagenome Rhizosphere
73 3300042013 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z071817_5339 Metagenome Rhizosphere
74 3300042146 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0714D_E14_080116_2979 Metagenome Rhizosphere
75 3300042185 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0515W_E14_080116_2592 Metagenome Rhizosphere
76 3300042533 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0826F_E14_072516_1472 Metagenome Rhizosphere
77 3300044666 Roots microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1E Metagenome Unclassified
78 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
79 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
80 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
81 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
82 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
83 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
84 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
85 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
86 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
87 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
88 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
89 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
90 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
91 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
92 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
93 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
94 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
95 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
96 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
97 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
98 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
99 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
100 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
101 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
102 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
103 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
104 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
105 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
106 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
107 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
108 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
109 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
110 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
111 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
112 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
113 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
114 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
115 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
116 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
117 650716007 Agrobacterium fabacearum H13-3 Isolate Rhizosphere
118 8003400568 Cupriavidus gilardii USM5 Isolate Rhizosphere
119 8011350971 Pseudomonas sp. 30_B Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 70.92
Metatranscriptomes 0
Isolates 29.08

Biome Distribution

Category Percentage (%)
Aerial Root 0.71
Bulb 0.71
Endosphere 16.31
Nodule 2.13
Rhizoplane 0.71
Rhizosphere 51.06
Stem 0
Stem Tuber 0.71
Unclassified 27.66

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25159J45721_1001880 3300002987 Bacteria 8394
2 Ga0055526_1000169 3300003771 Bacteria 57625
3 Ga0055534_1000344 3300003784 Bacteria 30069
4 Ga0065165_1000095 3300005262 Bacteria 145470
5 Ga0075368_10002854 3300006042 Bacteria 5703
6 Ga0075363_100001515 3300006048 Bacteria 8875
7 Ga0075364_10012527 3300006051 Bacteria 5191
8 Ga0075362_10001057 3300006177 Bacteria 8509
9 Ga0075367_10010182 3300006178 Bacteria 4930
10 Ga0079104_1000004 3300006946 Bacteria 444549
11 Ga0105251_10000174 3300009011 Bacteria 65638
12 Ga0105244_10008033 3300009036 Bacteria 6637
13 Ga0105244_10017951 3300009036 Bacteria 3983
14 Ga0105250_10000218 3300009092 Bacteria 47763
15 Ga0105250_10047246 3300009092 Bacteria 1726
16 Ga0105243_10011957 3300009148 Bacteria 6562
17 Ga0105243_10039777 3300009148 Bacteria 3668
18 Ga0157373_10014608 3300013100 Bacteria 5756
19 Ga0157371_10000409 3300013102 Bacteria 53288
20 Ga0157371_10000939 3300013102 Bacteria 32557
21 Ga0157370_10002559 3300013104 Bacteria 21828
22 Ga0182006_1023002 3300015261 Bacteria 2584
23 Ga0182007_10001895 3300015262 Bacteria 10915
24 Ga0182005_1002809 3300015265 Bacteria 6068
25 Ga0209130_1000117 3300025284 Bacteria 129338
26 Ga0209675_1000120 3300025291 Bacteria 108551
27 Ga0209025_1002863 3300025294 Bacteria 17308
28 Ga0209564_1000521 3300025295 Bacteria 62827
29 Ga0207426_1012927 3300025302 Bacteria 3116
30 Ga0207696_1000103 3300025711 Bacteria 165814
31 Ga0207696_1036992 3300025711 Bacteria 1447
32 Ga0207713_1000256 3300025735 Bacteria 65640
33 Ga0207647_10019157 3300025904 Bacteria 4607
34 Ga0207709_10000019 3300025935 Bacteria 402225
35 Ga0209281_1000005 3300027111 Bacteria 1242284
36 Ga0265332_10002323 3300031238 Bacteria 9710
37 Ga0307513_10015196 3300031456 Bacteria 9344
38 Ga0439447_000274 3300041407 Bacteria 18212
39 Ga0439451_002746 3300042009 Bacteria 3577
40 Ga0439456_002216 3300042013 Bacteria 3910
41 Ga0450907_000031 3300042146 Bacteria 64985
42 Ga0450909_000586 3300042185 Bacteria 4783
43 Ga0450901_001604 3300042533 Bacteria 2563
44 Ga0466977_0001721 3300044666 Bacteria 9378
45 Ga0495590_0000153 3300046457 Bacteria 41540
46 Ga0495638_0007034 3300046460 Bacteria 8117
47 Ga0495650_0001156 3300046471 Bacteria 28385
48 Ga0495650_0001374 3300046471 Bacteria 24014
49 Ga0495607_0000003 3300046501 Bacteria 366900
50 Ga0495607_0000087 3300046501 Bacteria 95985
51 Ga0495607_0000259 3300046501 Bacteria 56558
52 Ga0495607_0000540 3300046501 Bacteria 37020
53 Ga0495616_0000203 3300046513 Bacteria 49328
54 Ga0495632_0000020 3300046519 Bacteria 210606
55 Ga0495637_0000351 3300046520 Bacteria 35161
56 Ga0495643_0016756 3300046522 Bacteria 4301
57 Ga0495644_0009931 3300046523 Bacteria 3666
58 Ga0495654_0036486 3300046530 Bacteria 2470
59 Ga0495597_0000019 3300046542 Bacteria 164636
60 Ga0495622_0005260 3300046557 Bacteria 6001
61 Ga0495625_0148521 3300046660 Bacteria 1577
62 Ga0495658_0126368 3300046683 Bacteria 1552
63 Ga0495671_0002620 3300046692 Bacteria 11309
64 Ga0495660_0005734 3300046810 Bacteria 7416
65 Ga0495672_0006721 3300047320 Bacteria 8828
66 Ga0495679_006240 3300047446 Bacteria 5162
67 Ga0495673_0002231 3300047469 Bacteria 13917
68 Ga0495681_0000109 3300047470 Bacteria 71558
69 Ga0496104_0011271 3300048907 Bacteria 8003
70 Ga0496116_0070279 3300048919 Bacteria 2222
71 Ga0496116_0103695 3300048919 Bacteria 1692
72 Ga0496117_0002781 3300048920 Bacteria 21420
73 Ga0496118_0001076 3300048921 Bacteria 42618
74 Ga0496118_0004489 3300048921 Bacteria 16522
75 Ga0496118_0017553 3300048921 Bacteria 6506
76 Ga0496119_0000633 3300048922 Bacteria 47457
77 Ga0496119_0000708 3300048922 Bacteria 44757
78 Ga0496119_0029167 3300048922 Bacteria 3748
79 Ga0496120_0000797 3300048923 Bacteria 45375
80 Ga0496120_0000907 3300048923 Bacteria 41410
81 Ga0496122_0001282 3300048925 Bacteria 41769
82 Ga0496122_0036294 3300048925 Bacteria 3989
83 Ga0496123_0001050 3300048926 Bacteria 41752
84 Ga0496125_0031572 3300048928 Bacteria 4719
85 Ga0496125_0058126 3300048928 Bacteria 3126
86 Ga0496125_0067029 3300048928 Bacteria 2832
87 Ga0496126_0072633 3300048929 Bacteria 3060
88 Ga0495678_000010 3300049459 Bacteria 357896
89 Ga0495678_001591 3300049459 Bacteria 17420
90 Ga0495682_0000629 3300049460 Bacteria 23620
91 nmdc:mga03n38_1936_c1 3300050490 Bacteria 6203
92 nmdc:mga00v17_35333_c1 3300050491 Bacteria 2973
93 nmdc:mga00v17_44_c1 3300050491 Bacteria 79237
94 nmdc:mga07m45_66052_c1 3300050496 Bacteria 2055
95 nmdc:mga0sz30_134_c1 3300050516 Bacteria 27357
96 Ga0500618_000311 3300053125 Bacteria 35976
97 Ga0500561_0001557 3300053137 Bacteria 3734
98 Ga0500622_0000070 3300053156 Bacteria 115284

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300031456 Ga0307513_10015196 Ga0307513_100151963 341
2 3300025294 Ga0209025_1002863 Ga0209025_100286316 345
3 3300006042 Ga0075368_10002854 Ga0075368_100028544 346
4 3300006048 Ga0075363_100001515 Ga0075363_10000151510 346
5 3300006051 Ga0075364_10012527 Ga0075364_100125272 346
6 3300006177 Ga0075362_10001057 Ga0075362_100010574 346
7 3300006178 Ga0075367_10010182 Ga0075367_100101825 346
8 3300009148 Ga0105243_10011957 Ga0105243_100119575 346
9 3300013100 Ga0157373_10014608 Ga0157373_100146083 346
10 3300013102 Ga0157371_10000409 Ga0157371_1000040939 346
11 3300013104 Ga0157370_10002559 Ga0157370_100025599 346
12 3300048922 Ga0496119_0029167 Ga0496119_0029167_2193_3392 346
13 3300048923 Ga0496120_0000907 Ga0496120_0000907_9576_10775 346
14 3300048925 Ga0496122_0001282 Ga0496122_0001282_10091_11290 346
15 3300048926 Ga0496123_0001050 Ga0496123_0001050_30480_31679 346
16 3300050490 nmdc:mga03n38_1936_c1 nmdc:mga03n38_1936_c1_2728_3927 346
17 3300050491 nmdc:mga00v17_44_c1 nmdc:mga00v17_44_c1_14643_15842 346
18 3300050491 nmdc:mga00v17_44_c1 nmdc:mga00v17_44_c1_55291_56490 346
19 3300050496 nmdc:mga07m45_66052_c1 nmdc:mga07m45_66052_c1_633_1832 346
20 3300050516 nmdc:mga0sz30_134_c1 nmdc:mga0sz30_134_c1_22748_23947 346
21 3300053137 Ga0500561_0001557 Ga0500561_0001557_1031_2230 346
22 3300003771 Ga0055526_1000169 Ga0055526_100016926 351
23 3300003784 Ga0055534_1000344 Ga0055534_100034417 351
24 3300025291 Ga0209675_1000120 Ga0209675_100012037 351
25 3300025295 Ga0209564_1000521 Ga0209564_100052139 351
26 3300046683 Ga0495658_0126368 Ga0495658_0126368_288_1511 352
27 3300048928 Ga0496125_0031572 Ga0496125_0031572_2703_3923 352
28 3300053125 Ga0500618_000311 Ga0500618_000311_19965_21146 355
29 3300015265 Ga0182005_1002809 Ga0182005_10028096 359
30 3300042533 Ga0450901_001604 Ga0450901_001604_1201_2394 359
31 3300046457 Ga0495590_0000153 Ga0495590_0000153_7868_9058 359
32 3300046460 Ga0495638_0007034 Ga0495638_0007034_6082_7272 359
33 3300046471 Ga0495650_0001374 Ga0495650_0001374_14965_16155 359
34 3300046501 Ga0495607_0000259 Ga0495607_0000259_47493_48683 359
35 3300046513 Ga0495616_0000203 Ga0495616_0000203_40296_41486 359
36 3300046692 Ga0495671_0002620 Ga0495671_0002620_7768_8958 359
37 3300047470 Ga0495681_0000109 Ga0495681_0000109_7850_9040 359
38 3300049460 Ga0495682_0000629 Ga0495682_0000629_14963_16153 359
39 iso_pu_bacteria 2501025501 2501070193 359
40 3300046542 Ga0495597_0000019 Ga0495597_0000019_63509_64624 360
41 3300044666 Ga0466977_0001721 Ga0466977_0001721_3865_5091 362
42 3300048919 Ga0496116_0070279 Ga0496116_0070279_1034_2155 362
43 3300047320 Ga0495672_0006721 Ga0495672_0006721_3193_4383 364
44 3300042185 Ga0450909_000586 Ga0450909_000586_618_1808 366
45 3300046522 Ga0495643_0016756 Ga0495643_0016756_2129_3262 366
46 3300049459 Ga0495678_000010 Ga0495678_000010_222105_223388 366
47 3300009011 Ga0105251_10000174 Ga0105251_1000017427 367
48 3300009092 Ga0105250_10000218 Ga0105250_1000021817 367
49 3300015261 Ga0182006_1023002 Ga0182006_10230022 369
50 3300046501 Ga0495607_0000003 Ga0495607_0000003_202189_203391 369
51 iso_pu_bacteria 2919501602 2919502897 369
52 iso_pu_bacteria 2926063275 2926064570 369
53 3300046501 Ga0495607_0000003 Ga0495607_0000003_191324_192526 370
54 3300015262 Ga0182007_10001895 Ga0182007_100018956 371
55 3300048919 Ga0496116_0103695 Ga0496116_0103695_472_1620 371
56 3300048921 Ga0496118_0001076 Ga0496118_0001076_1394_2542 371
57 iso_pu_bacteria 2858688981 2858695988 371
58 3300009036 Ga0105244_10017951 Ga0105244_100179514 373
59 3300041407 Ga0439447_000274 Ga0439447_000274_12301_13530 373
60 3300042009 Ga0439451_002746 Ga0439451_002746_2150_3340 373
61 3300042013 Ga0439456_002216 Ga0439456_002216_2464_3654 373
62 3300042146 Ga0450907_000031 Ga0450907_000031_23606_24796 373
63 3300046501 Ga0495607_0000540 Ga0495607_0000540_27885_29075 373
64 3300046520 Ga0495637_0000351 Ga0495637_0000351_9748_10938 373
65 3300046530 Ga0495654_0036486 Ga0495654_0036486_696_1886 373
66 3300046660 Ga0495625_0148521 Ga0495625_0148521_44_1234 373
67 3300046810 Ga0495660_0005734 Ga0495660_0005734_6050_7240 373
68 3300047469 Ga0495673_0002231 Ga0495673_0002231_8902_10092 373
69 3300049459 Ga0495678_001591 Ga0495678_001591_4525_5715 373
70 3300050491 nmdc:mga00v17_35333_c1 nmdc:mga00v17_35333_c1_1709_2899 373
71 3300048928 Ga0496125_0058126 Ga0496125_0058126_317_1540 375
72 iso_pu_bacteria 2721755523 2722884343 375
73 iso_pu_bacteria 2818991450 2819622842 375
74 iso_pu_bacteria 8011350971 8011352379 375
75 iso_pu_bacteria 2808606386 2808984105 376
76 iso_pu_bacteria 2808606415 2809132129 376
77 iso_pu_bacteria 2808606419 2809151734 376
78 iso_pu_bacteria 2846952575 2846957906 376
79 iso_pu_bacteria 2852618963 2852623087 376
80 iso_pu_bacteria 2919125081 2919128498 376
81 iso_pu_bacteria 2984504281 2984505424 376
82 iso_pu_bacteria 2908669403 2908673727 377
83 3300006946 Ga0079104_1000004 Ga0079104_1000004244 379
84 3300009036 Ga0105244_10008033 Ga0105244_100080332 379
85 3300009092 Ga0105250_10047246 Ga0105250_100472462 379
86 3300009148 Ga0105243_10039777 Ga0105243_100397773 379
87 3300025711 Ga0207696_1036992 Ga0207696_10369922 379
88 3300025904 Ga0207647_10019157 Ga0207647_100191572 379
89 3300025935 Ga0207709_10000019 Ga0207709_10000019341 379
90 3300027111 Ga0209281_1000005 Ga0209281_1000005453 379
91 3300031238 Ga0265332_10002323 Ga0265332_100023238 379
92 3300046471 Ga0495650_0001156 Ga0495650_0001156_5680_6852 379
93 3300046523 Ga0495644_0009931 Ga0495644_0009931_1743_2915 379
94 3300047446 Ga0495679_006240 Ga0495679_006240_2610_3782 379
95 3300048907 Ga0496104_0011271 Ga0496104_0011271_2341_3513 379
96 3300048920 Ga0496117_0002781 Ga0496117_0002781_7642_8814 379
97 3300048921 Ga0496118_0004489 Ga0496118_0004489_2737_3909 379
98 3300048922 Ga0496119_0000633 Ga0496119_0000633_14164_15336 379
99 3300048923 Ga0496120_0000797 Ga0496120_0000797_14170_15342 379
100 3300048925 Ga0496122_0036294 Ga0496122_0036294_1394_2566 379
101 3300048929 Ga0496126_0072633 Ga0496126_0072633_1482_2654 379
102 iso_pu_bacteria 2858466076 2858469658 379
103 iso_pu_bacteria 2687453601 2689445724 380
104 iso_pu_bacteria 2847085930 2847090831 380
105 iso_pu_bacteria 2964636051 2964638528 380
106 iso_pu_bacteria 2842757796 2842758219 382
107 iso_pu_bacteria 2848858292 2848864403 382
108 iso_pu_bacteria 2510917015 2511105189 383
109 iso_pu_bacteria 2597490356 2599101762 383
110 iso_pu_bacteria 2711768156 2712469640 383
111 iso_pu_bacteria 2939607340 2939607453 383
112 3300048928 Ga0496125_0067029 Ga0496125_0067029_456_1652 384
113 iso_pu_bacteria 2554235003 2554244155 384
114 iso_pu_bacteria 2558860242 2559297961 384
115 iso_pu_bacteria 2643221693 2644520440 384
116 iso_pu_bacteria 2808606387 2808990345 384
117 iso_pu_bacteria 2899845264 2899848487 384
118 iso_pu_bacteria 2989771324 2989772430 384
119 3300013102 Ga0157371_10000939 Ga0157371_1000093911 385
120 3300025711 Ga0207696_1000103 Ga0207696_1000103114 385
121 3300025735 Ga0207713_1000256 Ga0207713_100025627 385
122 iso_pu_bacteria 2913036834 2913039061 385
123 3300046501 Ga0495607_0000087 Ga0495607_0000087_19090_20283 386
124 3300046519 Ga0495632_0000020 Ga0495632_0000020_115735_116931 386
125 iso_pu_bacteria 2597489889 2597870841 386
126 iso_pu_bacteria 2818991461 2819688208 387
127 iso_pu_bacteria 2904479285 2904481200 387
128 iso_pu_bacteria 2919481497 2919483525 387
129 iso_pu_bacteria 2926760298 2926764977 387
130 iso_pu_bacteria 650716007 650844221 387
131 iso_pu_bacteria 8003400568 8003401484 387
132 3300002987 JGI25159J45721_1001880 JGI25159J45721_10018803 388
133 3300005262 Ga0065165_1000095 Ga0065165_1000095148 388
134 3300025284 Ga0209130_1000117 Ga0209130_10001179 388
135 3300025302 Ga0207426_1012927 Ga0207426_10129273 388
136 3300046557 Ga0495622_0005260 Ga0495622_0005260_1118_2338 388
137 3300048921 Ga0496118_0017553 Ga0496118_0017553_4074_5273 388
138 3300048922 Ga0496119_0000708 Ga0496119_0000708_36043_37260 388
139 3300053156 Ga0500622_0000070 Ga0500622_0000070_96250_97467 388
140 iso_pu_bacteria 2858950400 2858956590 388
141 iso_pu_bacteria 2996310559 2996316361 388

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07690

MFS_1

Major Facilitator Superfamily

19

348

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
6kki-assembly1.cif.gz_A crystal structure of drug:proton antiporter-1 (dha1) family sotb, in the inward-occluded conformation 0.9228 20 377
6kkl-assembly1.cif.gz_A crystal structure of drug:proton antiporter-1 (dha1) family sotb, in the inward conformation (h115n mutant) 0.9218 22 377
6kkj-assembly1.cif.gz_B crystal structure of drug:proton antiporter-1 (dha1) family sotb, in the inward open conformation 0.9195 18 377
6kkk-assembly3.cif.gz_C crystal structure of drug:proton antiporter-1 (dha1) family sotb, in the inward open conformation (h115a mutant) 0.9108 22 376
6kkj-assembly1.cif.gz_B crystal structure of drug:proton antiporter-1 (dha1) family sotb, in the inward open conformation 0.9072 18 377
ID Description Score Start End Superfamily
af_P9WJX7_21_217_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9444 21 188 1.20.1250.20
af_P31122_11_385_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9425 18 377 1.20.1250.20
af_Q2FXH1_4_180_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9195 207 375 1.20.1250.20
af_P23910_1_374_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9162 20 375 1.20.1250.20
af_A0A1D8PQ72_272_455_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9137 207 377 1.20.1250.20
ID Description Score Start End GO Terms
AF-A0A1H5Y2S8-F1-model_v4 Predicted arabinose efflux permease, MFS family 0.9544 12 374 GO:0005886
GO:0022857
AF-A0A1G8QF85-F1-model_v4 deleted 0.9484 2 383
AF-A0A0X6ZVQ3-F1-model_v4 Major facilitator superfamily (MFS) profile domain-containing protein 0.9473 35 376 GO:0005886
GO:0022857
AF-A0A1M4TYM1-F1-model_v4 Predicted arabinose efflux permease, MFS family 0.9359 22 377 GO:0005886
GO:0022857
AF-A0A1G8QF85-F1-model_v4 deleted 0.9318 2 383

Feature Viewer

pLDDT pTM Quality
86.08 0.86 High
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Predicted Structure (AlphaFold2)

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