F183979

General Info

Members Datasets Scaffolds Average Seq Length
141 104 140 286

Family's Representative Sequence

Representative Sequence 3300049823|Ga0501044_0013627|Ga0501044_0013627_5739_6716
Length 325
Sequence MSAHVPAVLQPPPLDAHTLALIRMAVREDMGHATYGTAEGDRTVELAIPEGLRGVGTVVARKAGVIAGTYLLEPILREYQGAGGKVDCAVHTTDGARVAPQQPVATLTGPVRTLLSAERVLLNFLGHLSGVATLTRRYVDVVAETCPDPARRPAVCDTRKTTPAFRALDKYAVRCGGGVNDRLGLYDGVMLKDNHLAALKDRLGPHLSLRQLTAHIHESLDPGVTLWLEVDTLDQLRDALPVAAGEPAGADIILLDNFAPEGLRQAVALRDAAAAATGRRPIPLESSGGVTLETLAAVARTGVDRISIGALTHSAPALDLSLELA

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
3 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
4 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
5 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
6 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
7 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
8 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
9 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
10 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
11 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
12 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
13 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
14 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
15 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
16 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
17 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
18 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
19 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
20 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
21 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
22 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
23 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
24 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
25 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
26 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
27 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
28 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
29 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
30 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
31 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
32 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
33 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
43 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
44 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
45 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
46 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
47 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
48 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
49 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
50 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
51 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
52 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
53 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
54 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
55 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
56 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
57 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
58 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
59 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
60 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
61 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
62 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
63 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
64 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
65 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
66 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
67 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
68 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
69 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
70 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
71 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
72 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
73 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
74 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
75 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
76 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
77 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
78 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
79 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
80 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
81 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
82 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
83 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
84 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
85 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
86 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
87 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
88 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
89 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
90 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
91 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
92 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
93 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
94 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
95 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
96 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
97 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
98 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
99 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
100 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
101 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
102 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
103 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
104 8015556637 Bdellovibrio reynosensis LBG001 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.29
Metatranscriptomes 0
Isolates 0.71

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.71
Nodule 0
Rhizoplane 10.64
Rhizosphere 83.69
Stem 0
Stem Tuber 0
Unclassified 4.96

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_1691398 2162886007 Bacteria 141775
2 Ga0065704_10070132 3300005289 Bacteria 1955461
3 Ga0070677_10000195 3300005333 Bacteria 20886
4 Ga0070682_100073821 3300005337 Bacteria 2189
5 Ga0070668_100023432 3300005347 Bacteria 4669
6 Ga0070667_100221191 3300005367 Bacteria 1686
7 Ga0070700_100021160 3300005441 Bacteria 3778
8 Ga0070681_10006157 3300005458 Bacteria 11654
9 Ga0070706_100001422 3300005467 Bacteria 25336
10 Ga0070679_100014166 3300005530 Bacteria 7650
11 Ga0068854_100339591 3300005578 Bacteria 1226
12 Ga0070702_100065853 3300005615 Bacteria 2123
13 Ga0068861_100007551 3300005719 Bacteria 7458
14 Ga0068861_100092952 3300005719 Bacteria 2384
15 Ga0068860_100030731 3300005843 Bacteria 5165
16 Ga0068860_100085127 3300005843 Bacteria 3008
17 Ga0068862_100168114 3300005844 Bacteria 1962
18 Ga0081455_10011820 3300005937 Bacteria 8742
19 Ga0081455_10031794 3300005937 Bacteria 4767
20 Ga0081455_10043370 3300005937 Bacteria 3935
21 Ga0081455_10075906 3300005937 Bacteria 2771
22 Ga0070712_100207582 3300006175 Bacteria 1543
23 Ga0068871_100192765 3300006358 Unclassified 1756
24 Ga0075428_100304838 3300006844 Bacteria 1712
25 Ga0075430_100000580 3300006846 Bacteria 27791
26 Ga0075430_100040077 3300006846 Bacteria 3964
27 Ga0075431_100019732 3300006847 Bacteria 6880
28 Ga0075429_100000643 3300006880 Bacteria 27008
29 Ga0111539_10101086 3300009094 Bacteria 3385
30 Ga0111539_10291572 3300009094 Bacteria 1899
31 Ga0105245_10264075 3300009098 Bacteria 1676
32 Ga0105243_10014272 3300009148 Bacteria 6011
33 Ga0105241_10022087 3300009174 Bacteria 4711
34 Ga0105249_10000068 3300009553 Bacteria 148594
35 Ga0105239_10415066 3300010375 Bacteria 1524
36 Ga0105239_10627169 3300010375 Bacteria 1227
37 Ga0163162_10297786 3300013306 Bacteria 1745
38 Ga0157372_10007314 3300013307 Bacteria 11753
39 Ga0157372_10632155 3300013307 Bacteria 1247
40 Ga0157375_10204604 3300013308 Bacteria 2130
41 Ga0157376_10006295 3300014969 Bacteria 8374
42 Ga0207684_10003250 3300025910 Bacteria 15942
43 Ga0207707_10145031 3300025912 Bacteria 2075
44 Ga0207700_10707953 3300025928 Unclassified 899
45 Ga0207690_10237932 3300025932 Bacteria 1401
46 Ga0207669_10137338 3300025937 Bacteria 1691
47 Ga0207658_10248618 3300025986 Bacteria 1510
48 Ga0207708_10032039 3300026075 Bacteria 3991
49 Ga0207648_10164773 3300026089 Bacteria 1958
50 Ga0207675_100001945 3300026118 Bacteria 20636
51 Ga0207675_100025609 3300026118 Bacteria 5490
52 Ga0207675_100511890 3300026118 Bacteria 1196
53 Ga0265337_1000002 3300028556 Bacteria 139247
54 Ga0265338_10004083 3300028800 Bacteria 19993
55 Ga0307511_10166897 3300030521 Bacteria 1220
56 Ga0265327_10000725 3300031251 Bacteria 51662
57 Ga0307409_100149302 3300031995 Bacteria 2027
58 Ga0307416_100040996 3300032002 Bacteria 3603
59 Ga0307416_100382856 3300032002 Bacteria 1438
60 Ga0307415_100330231 3300032126 Bacteria 1276
61 Ga0316574_0104900 3300035398 Bacteria 1810
62 Ga0451853_1238526 3300041512 Bacteria 4018
63 Ga0466963_0141938 3300044694 Bacteria 1664
64 Ga0466959_0292317 3300045049 Bacteria 1117
65 Ga0466958_0265672 3300045836 Bacteria 1099
66 Ga0466967_0018346 3300045976 Bacteria 5589
67 Ga0495629_0000801 3300046459 Bacteria 25450
68 Ga0495600_0041962 3300046809 Bacteria 2982
69 Ga0495593_0101048 3300047673 Bacteria 1479
70 Ga0496100_0000002 3300048903 Bacteria 489057
71 Ga0496101_0000001 3300048904 Bacteria 489057
72 Ga0496101_0009493 3300048904 Bacteria 6396
73 Ga0496103_0057533 3300048906 Bacteria 2414
74 Ga0496105_0059299 3300048908 Bacteria 3158
75 Ga0496106_0000098 3300048909 Bacteria 66098
76 Ga0496106_0049700 3300048909 Bacteria 3160
77 Ga0496107_0000013 3300048910 Bacteria 178284
78 Ga0496107_0005714 3300048910 Bacteria 8518
79 Ga0496107_0214871 3300048910 Bacteria 1430
80 Ga0496110_0000169 3300048913 Bacteria 39993
81 Ga0496110_0041525 3300048913 Bacteria 4014
82 Ga0496110_0158364 3300048913 Bacteria 2052
83 Ga0496111_0112487 3300048914 Bacteria 2006
84 Ga0496114_0013776 3300048917 Bacteria 6480
85 Ga0496121_0031646 3300048924 Bacteria 4828
86 Ga0496121_0244746 3300048924 Bacteria 1247
87 Ga0496124_0000005 3300048927 Bacteria 922323
88 Ga0496126_0005235 3300048929 Bacteria 14933
89 Ga0496126_0041755 3300048929 Bacteria 4242
90 Ga0501032_0010257 3300049569 Bacteria 6759
91 Ga0501033_0014050 3300049570 Bacteria 6092
92 Ga0501034_0000564 3300049571 Bacteria 58699
93 Ga0501036_0029282 3300049572 Bacteria 4654
94 Ga0501038_0044548 3300049574 Bacteria 3853
95 Ga0501039_0002638 3300049575 Bacteria 13395
96 Ga0501039_0247262 3300049575 Bacteria 1403
97 Ga0501040_0048282 3300049576 Bacteria 2909
98 Ga0501040_0157935 3300049576 Bacteria 1602
99 Ga0501042_0010057 3300049578 Bacteria 6325
100 Ga0501046_0095687 3300049580 Bacteria 2281
101 Ga0501047_0014515 3300049581 Bacteria 7492
102 Ga0501048_0021708 3300049582 Bacteria 4698
103 Ga0501048_0083178 3300049582 Bacteria 2257
104 Ga0501068_0012482 3300049584 Bacteria 4820
105 Ga0501068_0170990 3300049584 Bacteria 1371
106 Ga0501069_0007590 3300049585 Bacteria 5693
107 Ga0501070_0171379 3300049586 Bacteria 1787
108 Ga0501070_0285667 3300049586 Bacteria 1345
109 Ga0501071_0019910 3300049587 Bacteria 4660
110 Ga0501071_0077538 3300049587 Bacteria 2427
111 Ga0501072_0014265 3300049588 Bacteria 6088
112 Ga0501073_0044955 3300049589 Bacteria 3112
113 Ga0501073_0153421 3300049589 Bacteria 1596
114 Ga0501075_0032336 3300049591 Bacteria 3885
115 Ga0501076_0001895 3300049592 Bacteria 14262
116 Ga0501079_0026831 3300049741 Bacteria 4416
117 Ga0501079_0108881 3300049741 Bacteria 2152
118 Ga0501080_0011479 3300049742 Bacteria 8110
119 Ga0501080_0044372 3300049742 Bacteria 4139
120 Ga0501080_0050087 3300049742 Bacteria 3888
121 Ga0501080_0140006 3300049742 Bacteria 2237
122 Ga0501081_0026382 3300049743 Bacteria 3917
123 Ga0501083_0005013 3300049744 Bacteria 9384
124 Ga0501083_0239141 3300049744 Bacteria 1182
125 Ga0501044_0013627 3300049823 Bacteria 8786
126 Ga0501044_0049171 3300049823 Bacteria 4353
127 Ga0501045_0011386 3300049824 Bacteria 6246
128 Ga0501045_0182730 3300049824 Bacteria 1563
129 nmdc:mga05p37_33792_c1 3300050507 Bacteria 6264
130 nmdc:mga0qj67_24913_c1 3300050509 Bacteria 4617
131 nmdc:mga0qj67_8031_c1 3300050509 Bacteria 7808
132 nmdc:mga06r32_22287_c1 3300050510 Bacteria 5855
133 nmdc:mga06r32_62770_c1 3300050510 Bacteria 3580
134 nmdc:mga08y16_23999_c1 3300050511 Bacteria 6441
135 Ga0495601_0030213 3300053077 Bacteria 3363
136 Ga0495601_0161232 3300053077 Bacteria 1466
137 Ga0500595_011531 3300053119 Bacteria 3456
138 Ga0501084_0038994 3300054114 Bacteria 3973
139 Ga0501082_0073298 3300060353 Bacteria 2949
140 Ga0530510_0007172 3300061734 Bacteria 7758

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300026118 Ga0207675_100511890 Ga0207675_1005118901 228
2 3300025928 Ga0207700_10707953 Ga0207700_107079532 237
3 3300035398 Ga0316574_0104900 Ga0316574_0104900_551_1441 258
4 3300031251 Ga0265327_10000725 Ga0265327_1000072530 260
5 3300045049 Ga0466959_0292317 Ga0466959_0292317_96_923 269
6 3300045836 Ga0466958_0265672 Ga0466958_0265672_190_1017 269
7 3300049589 Ga0501073_0044955 Ga0501073_0044955_1897_2805 269
8 3300006846 Ga0075430_100040077 Ga0075430_1000400774 270
9 3300009094 Ga0111539_10291572 Ga0111539_102915722 270
10 3300032002 Ga0307416_100040996 Ga0307416_1000409962 270
11 3300044694 Ga0466963_0141938 Ga0466963_0141938_484_1317 270
12 3300045976 Ga0466967_0018346 Ga0466967_0018346_3004_3837 270
13 3300049576 Ga0501040_0157935 Ga0501040_0157935_245_1063 270
14 3300049742 Ga0501080_0140006 Ga0501080_0140006_580_1401 270
15 3300049744 Ga0501083_0005013 Ga0501083_0005013_7980_8801 270
16 3300049824 Ga0501045_0182730 Ga0501045_0182730_297_1115 270
17 3300050509 nmdc:mga0qj67_24913_c1 nmdc:mga0qj67_24913_c1_3489_4457 270
18 iso_pu_bacteria 8015556637 8015556722 270
19 3300005467 Ga0070706_100001422 Ga0070706_1000014223 271
20 3300005719 Ga0068861_100092952 Ga0068861_1000929523 271
21 3300005937 Ga0081455_10011820 Ga0081455_100118204 271
22 3300005937 Ga0081455_10031794 Ga0081455_100317945 271
23 3300005937 Ga0081455_10043370 Ga0081455_100433703 271
24 3300005937 Ga0081455_10075906 Ga0081455_100759062 271
25 3300006175 Ga0070712_100207582 Ga0070712_1002075822 271
26 3300006844 Ga0075428_100304838 Ga0075428_1003048382 271
27 3300009094 Ga0111539_10101086 Ga0111539_101010862 271
28 3300009098 Ga0105245_10264075 Ga0105245_102640752 271
29 3300010375 Ga0105239_10415066 Ga0105239_104150661 271
30 3300013307 Ga0157372_10632155 Ga0157372_106321551 271
31 3300025910 Ga0207684_10003250 Ga0207684_100032504 271
32 3300025932 Ga0207690_10237932 Ga0207690_102379321 271
33 3300026118 Ga0207675_100025609 Ga0207675_1000256093 271
34 3300041512 Ga0451853_1238526 Ga0451853_1238526_1651_2493 271
35 3300048906 Ga0496103_0057533 Ga0496103_0057533_866_1726 271
36 3300048910 Ga0496107_0214871 Ga0496107_0214871_321_1181 271
37 3300048914 Ga0496111_0112487 Ga0496111_0112487_823_1683 271
38 3300049571 Ga0501034_0000564 Ga0501034_0000564_52003_52971 271
39 3300049572 Ga0501036_0029282 Ga0501036_0029282_765_1628 271
40 3300049574 Ga0501038_0044548 Ga0501038_0044548_1116_1979 271
41 3300049575 Ga0501039_0002638 Ga0501039_0002638_3481_4344 271
42 3300049576 Ga0501040_0048282 Ga0501040_0048282_1083_1946 271
43 3300049578 Ga0501042_0010057 Ga0501042_0010057_4415_5278 271
44 3300049580 Ga0501046_0095687 Ga0501046_0095687_1018_1881 271
45 3300049582 Ga0501048_0021708 Ga0501048_0021708_965_1828 271
46 3300049584 Ga0501068_0170990 Ga0501068_0170990_415_1278 271
47 3300049587 Ga0501071_0019910 Ga0501071_0019910_1832_2695 271
48 3300049588 Ga0501072_0014265 Ga0501072_0014265_4241_5104 271
49 3300049591 Ga0501075_0032336 Ga0501075_0032336_1424_2287 271
50 3300049592 Ga0501076_0001895 Ga0501076_0001895_3072_3935 271
51 3300049741 Ga0501079_0026831 Ga0501079_0026831_1283_2146 271
52 3300049742 Ga0501080_0044372 Ga0501080_0044372_2543_3406 271
53 3300049743 Ga0501081_0026382 Ga0501081_0026382_117_980 271
54 3300049744 Ga0501083_0239141 Ga0501083_0239141_61_924 271
55 3300049823 Ga0501044_0013627 Ga0501044_0013627_5739_6716 271
56 3300049824 Ga0501045_0011386 Ga0501045_0011386_4304_5167 271
57 3300050507 nmdc:mga05p37_33792_c1 nmdc:mga05p37_33792_c1_1530_2372 271
58 3300050510 nmdc:mga06r32_22287_c1 nmdc:mga06r32_22287_c1_834_1697 271
59 3300050511 nmdc:mga08y16_23999_c1 nmdc:mga08y16_23999_c1_2369_3232 271
60 3300054114 Ga0501084_0038994 Ga0501084_0038994_1144_2007 271
61 3300060353 Ga0501082_0073298 Ga0501082_0073298_1004_1867 271
62 3300061734 Ga0530510_0007172 Ga0530510_0007172_3301_4164 271
63 3300005333 Ga0070677_10000195 Ga0070677_100001956 272
64 3300005337 Ga0070682_100073821 Ga0070682_1000738212 272
65 3300005458 Ga0070681_10006157 Ga0070681_100061575 272
66 3300005530 Ga0070679_100014166 Ga0070679_1000141666 272
67 3300005615 Ga0070702_100065853 Ga0070702_1000658532 272
68 3300006358 Ga0068871_100192765 Ga0068871_1001927652 272
69 3300006846 Ga0075430_100000580 Ga0075430_10000058033 272
70 3300006847 Ga0075431_100019732 Ga0075431_1000197322 272
71 3300006880 Ga0075429_100000643 Ga0075429_1000006435 272
72 3300009174 Ga0105241_10022087 Ga0105241_100220873 272
73 3300009553 Ga0105249_10000068 Ga0105249_1000006862 272
74 3300010375 Ga0105239_10627169 Ga0105239_106271691 272
75 3300013307 Ga0157372_10007314 Ga0157372_100073147 272
76 3300025912 Ga0207707_10145031 Ga0207707_101450312 272
77 3300030521 Ga0307511_10166897 Ga0307511_101668972 272
78 3300031995 Ga0307409_100149302 Ga0307409_1001493023 272
79 3300032002 Ga0307416_100382856 Ga0307416_1003828561 272
80 3300032126 Ga0307415_100330231 Ga0307415_1003302311 272
81 3300048903 Ga0496100_0000002 Ga0496100_0000002_206912_207757 272
82 3300048904 Ga0496101_0000001 Ga0496101_0000001_206912_207757 272
83 3300048909 Ga0496106_0000098 Ga0496106_0000098_56317_57162 272
84 3300048910 Ga0496107_0000013 Ga0496107_0000013_34634_35479 272
85 3300048924 Ga0496121_0031646 Ga0496121_0031646_1108_1968 272
86 3300048929 Ga0496126_0041755 Ga0496126_0041755_215_1072 272
87 3300049569 Ga0501032_0010257 Ga0501032_0010257_1656_2528 272
88 3300049570 Ga0501033_0014050 Ga0501033_0014050_3438_4310 272
89 3300049575 Ga0501039_0247262 Ga0501039_0247262_355_1227 272
90 3300049581 Ga0501047_0014515 Ga0501047_0014515_5264_6136 272
91 3300049582 Ga0501048_0083178 Ga0501048_0083178_213_1070 272
92 3300049584 Ga0501068_0012482 Ga0501068_0012482_330_1202 272
93 3300049585 Ga0501069_0007590 Ga0501069_0007590_3144_4001 272
94 3300049586 Ga0501070_0171379 Ga0501070_0171379_568_1425 272
95 3300049586 Ga0501070_0285667 Ga0501070_0285667_209_1066 272
96 3300049587 Ga0501071_0077538 Ga0501071_0077538_360_1217 272
97 3300049589 Ga0501073_0153421 Ga0501073_0153421_448_1320 272
98 3300049742 Ga0501080_0011479 Ga0501080_0011479_4144_5016 272
99 3300049742 Ga0501080_0050087 Ga0501080_0050087_163_1020 272
100 3300049823 Ga0501044_0049171 Ga0501044_0049171_3006_3863 272
101 3300050509 nmdc:mga0qj67_8031_c1 nmdc:mga0qj67_8031_c1_6494_7360 272
102 3300050510 nmdc:mga06r32_62770_c1 nmdc:mga06r32_62770_c1_2623_3489 272
103 3300053077 Ga0495601_0161232 Ga0495601_0161232_184_1044 272
104 3300053119 Ga0500595_011531 Ga0500595_011531_1696_2565 272
105 3300005843 Ga0068860_100085127 Ga0068860_1000851272 273
106 3300028556 Ga0265337_1000002 Ga0265337_100000210 273
107 3300046459 Ga0495629_0000801 Ga0495629_0000801_23295_24155 273
108 3300047673 Ga0495593_0101048 Ga0495593_0101048_464_1381 273
109 3300048913 Ga0496110_0000169 Ga0496110_0000169_8909_9730 273
110 3300049741 Ga0501079_0108881 Ga0501079_0108881_292_1161 273
111 2162886007 SwRhRL2b_contig_1691398 SwRhRL2b_0912.00001900 274
112 3300005289 Ga0065704_10070132 Ga0065704_10070132991 274
113 3300005347 Ga0070668_100023432 Ga0070668_1000234322 274
114 3300005367 Ga0070667_100221191 Ga0070667_1002211912 274
115 3300005441 Ga0070700_100021160 Ga0070700_1000211601 274
116 3300005578 Ga0068854_100339591 Ga0068854_1003395912 274
117 3300005719 Ga0068861_100007551 Ga0068861_1000075515 274
118 3300005843 Ga0068860_100030731 Ga0068860_1000307313 274
119 3300005844 Ga0068862_100168114 Ga0068862_1001681142 274
120 3300009148 Ga0105243_10014272 Ga0105243_100142724 274
121 3300013306 Ga0163162_10297786 Ga0163162_102977862 274
122 3300013308 Ga0157375_10204604 Ga0157375_102046042 274
123 3300014969 Ga0157376_10006295 Ga0157376_100062957 274
124 3300025937 Ga0207669_10137338 Ga0207669_101373381 274
125 3300025986 Ga0207658_10248618 Ga0207658_102486182 274
126 3300026075 Ga0207708_10032039 Ga0207708_100320394 274
127 3300026089 Ga0207648_10164773 Ga0207648_101647732 274
128 3300026118 Ga0207675_100001945 Ga0207675_10000194518 274
129 3300028800 Ga0265338_10004083 Ga0265338_100040838 274
130 3300046809 Ga0495600_0041962 Ga0495600_0041962_645_1487 274
131 3300048904 Ga0496101_0009493 Ga0496101_0009493_2126_3016 274
132 3300048908 Ga0496105_0059299 Ga0496105_0059299_2102_2992 274
133 3300048909 Ga0496106_0049700 Ga0496106_0049700_1468_2358 274
134 3300048910 Ga0496107_0005714 Ga0496107_0005714_1810_2700 274
135 3300048913 Ga0496110_0041525 Ga0496110_0041525_1877_2701 274
136 3300048913 Ga0496110_0158364 Ga0496110_0158364_658_1482 274
137 3300048917 Ga0496114_0013776 Ga0496114_0013776_2886_3776 274
138 3300048924 Ga0496121_0244746 Ga0496121_0244746_18_842 274
139 3300048927 Ga0496124_0000005 Ga0496124_0000005_224947_225771 274
140 3300048929 Ga0496126_0005235 Ga0496126_0005235_12501_13325 274
141 3300053077 Ga0495601_0030213 Ga0495601_0030213_1508_2356 274

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01729

QRPTase_C

Quinolinate phosphoribosyl transferase, C-terminal domain

131

323

0.95

PF02749

QRPTase_N

Quinolinate phosphoribosyl transferase, N-terminal domain

41

129

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
7xgn-assembly1.cif.gz_B quinolinate phosphoribosyl transferase (qaprtase) from streptomyces pyridomyceticus nrrl b-2517 in complex with nicotinic acid (na) 0.9667 3 271
3tqv-assembly1.cif.gz_B structure of the nicotinate-nucleotide pyrophosphorylase from francisella tularensis. 0.9566 3 271
1qpn-assembly1.cif.gz_A quinolinate phosphoribosyl transferase from mycobacterium tuberculosis in complex with ncnn 0.956 3 269
1x1o-assembly1.cif.gz_A crystal structure of project id tt0268 from thermus thermophilus hb8 0.9531 1 270
5hul-assembly1.cif.gz_A crystal structure of nadc deletion mutant in cubic space group 0.9517 5 268
ID Description Score Start End Superfamily
1qpnA02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9705 110 260 3.20.20.70
3l0gD02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9642 110 260 3.20.20.70
af_Q57916_127_268_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9539 128 259 3.20.20.70
3tqvB01 Alpha Beta;Alpha-Beta Complex;Aldehyde Oxidoreductase; domain 3;Quinolinate phosphoribosyl transferase, N-terminal domain 0.9493 3 115 3.90.1170.20
af_Q9ZU32_47_153_3.90.1170.20 Alpha Beta;Alpha-Beta Complex;Aldehyde Oxidoreductase; domain 3;Quinolinate phosphoribosyl transferase, N-terminal domain 0.9467 4 108 3.90.1170.20
ID Description Score Start End GO Terms
AF-A0A4Q6BTX0-F1-model_v4 nicotinate-nucleotide diphosphorylase (carboxylating) (EC 2.4.2.19) (Quinolinate phosphoribosyltransferase [decarboxylating]) 0.981 1 246 GO:0004514
GO:0005737
GO:0009435
GO:0034213
AF-A0A258AR60-F1-model_v4 nicotinate-nucleotide diphosphorylase (carboxylating) (EC 2.4.2.19) (Quinolinate phosphoribosyltransferase [decarboxylating]) 0.9794 30 271 GO:0004514
GO:0005737
GO:0009435
GO:0034213
AF-A0A0J5GM70-F1-model_v4 nicotinate-nucleotide diphosphorylase (carboxylating) (EC 2.4.2.19) (Quinolinate phosphoribosyltransferase [decarboxylating]) 0.9789 119 267 GO:0004514
GO:0005737
GO:0009435
GO:0034213
AF-A0A1M3AE79-F1-model_v4 deleted 0.9777 130 267
AF-A0A7V9PM05-F1-model_v4 deleted 0.9764 112 267

Feature Viewer

pLDDT pTM Quality
94.93 0.9 High
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Predicted Structure (AlphaFold2)

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