F183873

General Info

Members Datasets Scaffolds Average Seq Length
141 111 282 1000

Family's Representative Sequence

Representative Sequence 3300049570|Ga0501033_0022645|Ga0501033_0022645_120_3404
Length 1064
Sequence MSPSKPFILRPVATSLLMVAVDYPTIQIQTFYPGAAPDVMATSVTAPLERQFGQLPGLAQMTSTSSDGCSVITLQFALELNIDVAEQEVQAAINAATTYLPRDLPNPPIYAKTNPADTPIITLALSSDSLPLSRVQDLADTRLAQTISQLPGVGLVSISGGQKPAVRIQVNPTALADLGLSMDDLRTVITTANVNQAKGSFDGPRLSHTIGANDQLLTSADYRPLIIAYHNNAPVVLSDIAQVVDSVENERQAAWMNLTPAVIVNIQRQPGANIIEVVDRVKALLPQLKTSLPPAIKVDILTDRTNTIRASVSDVQFELGLTLRSIAATVIPSVAVPLSLVGTFGAMYLLGYSLNNLTLMALTISTGFVVDDAIVMIENITRYIEEGEAPLQAALKGSEQIGFTILSLSVSLIAVLIPLLFMGDIVGRLFREFAVTLSMTILVSAVVSLTLTPMMCALLLRHKRPEDHGWMYRTSERGFEKIIEFYDVTLSWVLRHQLLTLLVAVITLVLTGLLYVEIPKGFFPVQDTGVILAISEAPQDVSFDSMAKRQQRLAQVILKDPAVDSLSSFIGIEGTNTTLNSGRLQINLKPLPESYLEQAIRFFKHEPQLRGDQTRTAVATDIIRRLQPQLAKVEGIQLFMQPVQDLSVETRISRTQFQYTLESPSSADLAEWAPKFVAALKQRPELTDVATDQQNQGLQAKIVIDRDTAARLQVTPQMIDDALYNAFGQRQVSTMFTQLNQYHVVLEVAPEFRDQPDDLDNIYLHPPTGVKVPLSAVMHLENNTVPLTINHQGQFPVTTLSFNLAPRASLGDAVQAVETVRENLGMPASIQPSFQGTAQAFRASLTNTPLLILAAIVTVYIVLGVLYESYIHPITILSTLPSAAVGALLALILCNNDFSVIALIGIILLIGIVEKNAIMMIDFALEAERKDGKPPEEAIYQASLLRFRPILMTTMAALLGGVPLALSSGTGSELRRPLGIAIVGGLIFSQMLTLYTTPVIYLAFDKLAKKLGGIGNRRAEGEPPQTPTDSHDLHGGGNGDRYPDGMQPALPAPEEAPLLPAGGA

Samples

Sample ID Description Type Environment
1 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
5 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
6 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
7 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
8 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
9 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
10 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
11 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
12 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
13 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
14 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
15 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
16 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
17 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
18 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
19 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
20 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
21 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
22 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
23 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
24 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
25 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
26 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
27 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
28 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
29 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
30 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
31 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
32 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
33 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
34 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
35 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
36 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
37 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
38 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
39 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
40 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
41 3300024227 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 Metagenome Rhizosphere
42 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
65 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
66 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
67 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
68 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
69 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
70 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
71 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
72 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
73 3300033547 Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE1 Metagenome Unclassified
74 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
75 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
76 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
77 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
78 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
79 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
80 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
81 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
82 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
83 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
84 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
85 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
86 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
87 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
88 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
89 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
90 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
91 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
92 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
93 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
94 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
95 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
97 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
98 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
100 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
101 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
102 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
103 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
104 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
105 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
106 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
107 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
108 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
109 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
110 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
111 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.29
Metatranscriptomes 0.71
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.71
Nodule 0
Rhizoplane 4.96
Rhizosphere 90.78
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501033_0022645 3300049570 Bacteria 4739
2 rootH2_10036148 3300003320 Bacteria 11060
3 Ga0070658_10000074 3300005327 Bacteria 95827
4 Ga0070661_100033984 3300005344 Bacteria 3697
5 Ga0070709_10000057 3300005434 Bacteria 87352
6 Ga0070711_100010182 3300005439 Bacteria 5812
7 Ga0070711_100013258 3300005439 Bacteria 5173
8 Ga0070705_100002038 3300005440 Bacteria 10334
9 Ga0070694_100002180 3300005444 Bacteria 11600
10 Ga0070708_100001283 3300005445 Bacteria 19343
11 Ga0070708_100026054 3300005445 Bacteria 5002
12 Ga0070706_100002785 3300005467 Bacteria 17480
13 Ga0070699_100005050 3300005518 Bacteria 11615
14 Ga0070697_100000132 3300005536 Bacteria 59826
15 Ga0070697_100011553 3300005536 Bacteria 6899
16 Ga0070695_100001554 3300005545 Bacteria 12813
17 Ga0070696_100001055 3300005546 Bacteria 17828
18 Ga0070693_100000010 3300005547 Bacteria 73515
19 Ga0070665_100001205 3300005548 Bacteria 31505
20 Ga0070665_100007513 3300005548 Bacteria 11084
21 Ga0068855_100002938 3300005563 Bacteria 20835
22 Ga0068855_100019479 3300005563 Bacteria 8154
23 Ga0068857_100017754 3300005577 Bacteria 6237
24 Ga0068856_100003001 3300005614 Bacteria 17276
25 Ga0068856_100016697 3300005614 Bacteria 7110
26 Ga0068852_100020766 3300005616 Bacteria 5226
27 Ga0068858_100004347 3300005842 Bacteria 13904
28 Ga0068862_100025037 3300005844 Bacteria 5009
29 Ga0070717_10016071 3300006028 Bacteria 5796
30 Ga0070716_100000877 3300006173 Bacteria 12970
31 Ga0075434_100008117 3300006871 Bacteria 9738
32 Ga0075436_100001630 3300006914 Bacteria 15346
33 Ga0075436_100003387 3300006914 Bacteria 10922
34 Ga0099794_10000502 3300007265 Bacteria 13104
35 Ga0105240_10003369 3300009093 Bacteria 24852
36 Ga0105240_10004991 3300009093 Bacteria 19933
37 Ga0105240_10034716 3300009093 Bacteria 6502
38 Ga0105245_10020113 3300009098 Bacteria 5851
39 Ga0105245_10092805 3300009098 Bacteria 2781
40 Ga0105241_10008362 3300009174 Bacteria 7621
41 Ga0105242_10012856 3300009176 Bacteria 6450
42 Ga0105248_10006820 3300009177 Bacteria 12517
43 Ga0105237_10004260 3300009545 Bacteria 16634
44 Ga0105239_10006592 3300010375 Bacteria 13446
45 Ga0157370_10001857 3300013104 Bacteria 26042
46 Ga0157370_10007552 3300013104 Bacteria 11812
47 Ga0157369_10001089 3300013105 Bacteria 33945
48 Ga0157374_10006492 3300013296 Bacteria 9930
49 Ga0157374_10022600 3300013296 Bacteria 5611
50 Ga0157378_10000212 3300013297 Bacteria 55989
51 Ga0163162_10009171 3300013306 Bacteria 9627
52 Ga0157372_10005212 3300013307 Bacteria 13816
53 Ga0228598_1000093 3300024227 Bacteria 14583
54 Ga0207692_10005873 3300025898 Bacteria 4948
55 Ga0207699_10000010 3300025906 Bacteria 295869
56 Ga0207705_10000081 3300025909 Bacteria 118488
57 Ga0207707_10015028 3300025912 Bacteria 6740
58 Ga0207695_10001373 3300025913 Bacteria 41313
59 Ga0207695_10004291 3300025913 Bacteria 19545
60 Ga0207693_10040153 3300025915 Bacteria 3685
61 Ga0207663_10012951 3300025916 Bacteria 4522
62 Ga0207657_10001799 3300025919 Bacteria 23119
63 Ga0207649_10008128 3300025920 Bacteria 5709
64 Ga0207700_10040163 3300025928 Bacteria 3413
65 Ga0207686_10006159 3300025934 Bacteria 6447
66 Ga0207665_10000021 3300025939 Bacteria 111867
67 Ga0207665_10009282 3300025939 Bacteria 6458
68 Ga0207665_10020102 3300025939 Bacteria 4385
69 Ga0207667_10004789 3300025949 Bacteria 16544
70 Ga0207667_10005037 3300025949 Bacteria 16143
71 Ga0207667_10008170 3300025949 Bacteria 12452
72 Ga0207667_10044369 3300025949 Bacteria 4711
73 Ga0207677_10012892 3300026023 Bacteria 4827
74 Ga0207703_10005601 3300026035 Bacteria 10086
75 Ga0207703_10016504 3300026035 Bacteria 5758
76 Ga0207639_10009145 3300026041 Bacteria 6829
77 Ga0207702_10004044 3300026078 Bacteria 13170
78 Ga0207674_10007159 3300026116 Bacteria 13032
79 Ga0207698_10027815 3300026142 Bacteria 4021
80 Ga0209588_1001699 3300027671 Bacteria 5813
81 Ga0268266_10003951 3300028379 Bacteria 14394
82 Ga0268265_10008876 3300028380 Bacteria 6795
83 Ga0268265_10015409 3300028380 Bacteria 5232
84 Ga0265323_10001323 3300028653 Bacteria 12304
85 Ga0307515_10007208 3300028794 Bacteria 22025
86 Ga0265338_10000330 3300028800 Bacteria 86006
87 Ga0265338_10011022 3300028800 Bacteria 10495
88 Ga0265760_10006139 3300031090 Bacteria 3432
89 Ga0265331_10004931 3300031250 Bacteria 8202
90 Ga0265316_10002015 3300031344 Bacteria 21374
91 Ga0265316_10007419 3300031344 Bacteria 10330
92 Ga0265316_10020108 3300031344 Bacteria 5690
93 Ga0265316_10027111 3300031344 Bacteria 4751
94 Ga0307509_10000248 3300031507 Bacteria 87123
95 Ga0265313_10001343 3300031595 Bacteria 23171
96 Ga0265313_10002611 3300031595 Bacteria 15347
97 Ga0265314_10001217 3300031711 Bacteria 29592
98 Ga0265314_10001243 3300031711 Bacteria 29082
99 Ga0316212_1000770 3300033547 Bacteria 4086
100 Ga0373953_0000965 3300035117 Bacteria 8050
101 Ga0373954_0000650 3300035118 Bacteria 13289
102 Ga0373933_0001306 3300035724 Bacteria 14678
103 Ga0373937_0004382 3300036401 Bacteria 11988
104 Ga0373937_0034333 3300036401 Bacteria 4614
105 Ga0373925_0005525 3300037068 Bacteria 9409
106 Ga0395900_0018703 3300037418 Bacteria 7066
107 Ga0436364_0120319 3300037853 Bacteria 15421
108 Ga0436360_0661802 3300039438 Bacteria 22794
109 Ga0451577_0000282 3300042876 Bacteria 98412
110 Ga0453684_0012163 3300044712 Bacteria 14274
111 Ga0451576_0000159 3300045051 Bacteria 171363
112 Ga0495604_0000622 3300047317 Bacteria 30466
113 Ga0495674_0006014 3300047319 Bacteria 11653
114 Ga0495602_0002025 3300048088 Bacteria 20397
115 Ga0496102_0007826 3300048905 Bacteria 9136
116 Ga0496102_0020466 3300048905 Bacteria 5847
117 Ga0496104_0015373 3300048907 Bacteria 6931
118 Ga0496111_0001808 3300048914 Bacteria 12562
119 Ga0496113_0004189 3300048916 Bacteria 8813
120 Ga0496115_0030709 3300048918 Bacteria 4229
121 Ga0496115_0043712 3300048918 Bacteria 3573
122 Ga0501031_0002888 3300049568 Bacteria 10983
123 Ga0501032_0008091 3300049569 Bacteria 7665
124 Ga0501034_0001817 3300049571 Bacteria 27139
125 Ga0501036_0000378 3300049572 Bacteria 31410
126 Ga0501037_0005975 3300049573 Bacteria 8893
127 Ga0501038_0001519 3300049574 Bacteria 21371
128 Ga0501038_0007373 3300049574 Bacteria 10145
129 Ga0501043_0006494 3300049579 Bacteria 9388
130 Ga0501067_0001889 3300049583 Bacteria 11504
131 Ga0501068_0000658 3300049584 Bacteria 17779
132 Ga0501069_0001346 3300049585 Bacteria 12055
133 Ga0501072_0004010 3300049588 Bacteria 11140
134 Ga0501077_0003903 3300049593 Bacteria 8982
135 Ga0501079_0006760 3300049741 Bacteria 8625
136 Ga0501080_0000378 3300049742 Bacteria 34218
137 nmdc:mga08x19_8365_c1 3300050514 Bacteria 6161
138 Ga0495601_0017156 3300053077 Bacteria 4394
139 Ga0495619_0017149 3300053085 Bacteria 4588
140 Ga0500566_0000179 3300053094 Bacteria 32430
141 Ga0501084_0005784 3300054114 Bacteria 10169
142 Ga0501033_0022645
143 rootH2_10036148
144 Ga0070658_10000074
145 Ga0070661_100033984
146 Ga0070709_10000057
147 Ga0070711_100010182
148 Ga0070711_100013258
149 Ga0070705_100002038
150 Ga0070694_100002180
151 Ga0070708_100001283
152 Ga0070708_100026054
153 Ga0070706_100002785
154 Ga0070699_100005050
155 Ga0070697_100000132
156 Ga0070697_100011553
157 Ga0070695_100001554
158 Ga0070696_100001055
159 Ga0070693_100000010
160 Ga0070665_100001205
161 Ga0070665_100007513
162 Ga0068855_100002938
163 Ga0068855_100019479
164 Ga0068857_100017754
165 Ga0068856_100003001
166 Ga0068856_100016697
167 Ga0068852_100020766
168 Ga0068858_100004347
169 Ga0068862_100025037
170 Ga0070717_10016071
171 Ga0070716_100000877
172 Ga0075434_100008117
173 Ga0075436_100001630
174 Ga0075436_100003387
175 Ga0099794_10000502
176 Ga0105240_10003369
177 Ga0105240_10004991
178 Ga0105240_10034716
179 Ga0105245_10020113
180 Ga0105245_10092805
181 Ga0105241_10008362
182 Ga0105242_10012856
183 Ga0105248_10006820
184 Ga0105237_10004260
185 Ga0105239_10006592
186 Ga0157370_10001857
187 Ga0157370_10007552
188 Ga0157369_10001089
189 Ga0157374_10006492
190 Ga0157374_10022600
191 Ga0157378_10000212
192 Ga0163162_10009171
193 Ga0157372_10005212
194 Ga0228598_1000093
195 Ga0207692_10005873
196 Ga0207699_10000010
197 Ga0207705_10000081
198 Ga0207707_10015028
199 Ga0207695_10001373
200 Ga0207695_10004291
201 Ga0207693_10040153
202 Ga0207663_10012951
203 Ga0207657_10001799
204 Ga0207649_10008128
205 Ga0207700_10040163
206 Ga0207686_10006159
207 Ga0207665_10000021
208 Ga0207665_10009282
209 Ga0207665_10020102
210 Ga0207667_10004789
211 Ga0207667_10005037
212 Ga0207667_10008170
213 Ga0207667_10044369
214 Ga0207677_10012892
215 Ga0207703_10005601
216 Ga0207703_10016504
217 Ga0207639_10009145
218 Ga0207702_10004044
219 Ga0207674_10007159
220 Ga0207698_10027815
221 Ga0209588_1001699
222 Ga0268266_10003951
223 Ga0268265_10008876
224 Ga0268265_10015409
225 Ga0265323_10001323
226 Ga0307515_10007208
227 Ga0265338_10000330
228 Ga0265338_10011022
229 Ga0265760_10006139
230 Ga0265331_10004931
231 Ga0265316_10002015
232 Ga0265316_10007419
233 Ga0265316_10020108
234 Ga0265316_10027111
235 Ga0307509_10000248
236 Ga0265313_10001343
237 Ga0265313_10002611
238 Ga0265314_10001217
239 Ga0265314_10001243
240 Ga0316212_1000770
241 Ga0373953_0000965
242 Ga0373954_0000650
243 Ga0373933_0001306
244 Ga0373937_0004382
245 Ga0373937_0034333
246 Ga0373925_0005525
247 Ga0395900_0018703
248 Ga0436364_0120319
249 Ga0436360_0661802
250 Ga0451577_0000282
251 Ga0453684_0012163
252 Ga0451576_0000159
253 Ga0495604_0000622
254 Ga0495674_0006014
255 Ga0495602_0002025
256 Ga0496102_0007826
257 Ga0496102_0020466
258 Ga0496104_0015373
259 Ga0496111_0001808
260 Ga0496113_0004189
261 Ga0496115_0030709
262 Ga0496115_0043712
263 Ga0501031_0002888
264 Ga0501032_0008091
265 Ga0501034_0001817
266 Ga0501036_0000378
267 Ga0501037_0005975
268 Ga0501038_0001519
269 Ga0501038_0007373
270 Ga0501043_0006494
271 Ga0501067_0001889
272 Ga0501068_0000658
273 Ga0501069_0001346
274 Ga0501072_0004010
275 Ga0501077_0003903
276 Ga0501079_0006760
277 Ga0501080_0000378
278 nmdc:mga08x19_8365_c1
279 Ga0495601_0017156
280 Ga0495619_0017149
281 Ga0500566_0000179
282 Ga0501084_0005784

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00873

ACR_tran

AcrB/AcrD/AcrF family

17

1005

0.97

PF03176

MMPL

MMPL family

302

479

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
7cz9-assembly2.cif.gz_E crystal structure of multidrug efflux transporter oqxb from klebsiella pneumoniae 0.8288 1 991
4u8y-assembly1.cif.gz_C coupling of remote alternating-access transport mechanisms for protons and substrates in the multidrug efflux pump acrb 0.8263 4 990
7rr8-assembly1.cif.gz_C multidrug efflux pump subunit acrb 0.8247 4 990
4u95-assembly1.cif.gz_C coupling of remote alternating-access transport mechanisms for protons and substrates in the multidrug efflux pump acrb 0.8229 4 990
6zo5-assembly1.cif.gz_C fusidic acid binding to the tm1/tm2 groove of acrb-g619p_g621p 0.8208 7 990
ID Description Score Start End Superfamily
af_P38054_46_113_3.30.70.1430 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Multidrug efflux transporter AcrB pore domain 0.967 46 110 3.30.70.1430
af_P24181_868_1032_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9511 841 990 1.20.1640.10
af_P37637_331_506_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9464 315 482 1.20.1640.10
2drdB01 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9383 313 474 1.20.1640.10
3w9iC05 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.938 838 989 1.20.1640.10
ID Description Score Start End GO Terms
AF-A0A355AMG5-F1-model_v4 AcrB/AcrD/AcrF family protein 0.9648 345 467 GO:0005886
GO:0042910
AF-A0A484ZPC0-F1-model_v4 Multidrug transporter MdtC 0.9431 331 485 GO:0005886
GO:0042910
AF-A0A355AMG5-F1-model_v4 AcrB/AcrD/AcrF family protein 0.9353 345 467 GO:0005886
GO:0042910
AF-A0A5M5BVS6-F1-model_v4 Multidrug efflux RND transporter permease subunit 0.9256 850 993 GO:0005886
GO:0042910
AF-A0A5R8QME5-F1-model_v4 deleted 0.9221 797 996

Map