F182916

General Info

Members Datasets Scaffolds Average Seq Length
141 105 282 386

Family's Representative Sequence

Representative Sequence 3300026116|Ga0207674_10332835|Ga0207674_103328351
Length 428
Sequence MREDERVTDALAAPSSLRRPRRVILLGSTGSIGTQALDLVRRNPDRFELVGLSAGGNLELLAEQAVAFAVPVVSAANATDSELSAAIRRAAHGTRPRTHGAMGSEASSAAYDPELLTGPDASSALAARPADVVVNGITGAIGLEPTLAALRAGTTLALANKESLIIGGPLVKALARPGQIVPVDSEHSAIAQCLRGGRAEEVRRLVVTASGGPFRGRSRAELADVTPEQALAHPNFAMGRVITTNSATLVNKGLEVIEAHLLFDIPFDRIDVVVHPQQMIHSMVEFVDGSTIAQAGPPRMLVPIALGMSWPERIPDADVPCDWTKAQSWEFEPLDDEAFPAVALARRVGQAGGTWPAVYNAANEVAVDAFHEGRLGFVGIVDTVAAIVDSYAAEPLSQITDLTLDDVLTADAWAREAARARVDVFESM

Samples

Sample ID Description Type Environment
1 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
2 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
3 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
4 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
5 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
6 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
7 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
8 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
9 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
10 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
11 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
12 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
13 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
14 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
15 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
16 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
17 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
18 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
19 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
20 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
21 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
22 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
23 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
24 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
25 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
26 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
27 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
28 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
29 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
30 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
31 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
32 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
33 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
34 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
35 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
36 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
37 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
38 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
39 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
40 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
41 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
42 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
43 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
44 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
45 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
46 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
47 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
48 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
49 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
50 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
51 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
52 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
53 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
54 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
55 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
56 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
57 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
58 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
59 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
60 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
61 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
62 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
63 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
64 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
65 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
66 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
67 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
68 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
69 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
70 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
71 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
72 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
73 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
74 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
75 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
76 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
77 2643221567 Phycicoccus sp. Root563 Isolate Unclassified
78 2643221624 Phycicoccus sp. Root101 Isolate Unclassified
79 2643221641 Nocardioides sp. Root122 Isolate Unclassified
80 2643221679 Angustibacter sp. Root456 Isolate Unclassified
81 2643221711 Terrabacter sp. Root85 Isolate Unclassified
82 2728369276 Kineococcus rhizosphaerae DSM 19711 Isolate Rhizosphere
83 2738541272 Promicromonospora sp. AC04 Isolate Unclassified
84 2738543027 Promicromonospora sp. CF082 Isolate Unclassified
85 2739367654 Promicromonospora sp. YR516 Isolate Unclassified
86 2758568522 Promicromonospora thailandica SAI-039 Isolate Unclassified
87 2758568621 Promicromonospora sukumoe SAI-064 Isolate Unclassified
88 2773857762 Nocardioides sp. SAI-095 Isolate Unclassified
89 2784132109 Dermacoccus sp. DS28 SAI-028 Isolate Unclassified
90 2808606365 Phycicoccus sp. SLBN-51 Isolate Unclassified
91 2808606394 Promicromonospora sp. C35 Isolate Unclassified
92 2808606439 Nocardioides sp. SLBN-172 Isolate Unclassified
93 2811994874 Nocardioides sp. SLBN-35 Isolate Unclassified
94 2811994878 Nocardioides sp. SLBN-169 Isolate Unclassified
95 2811994882 Terrabacter sp. SLBN-196 Isolate Unclassified
96 2818991318 Humibacillus xanthopallidus SLBN-155 Isolate Unclassified
97 2818991458 Terrabacter sp. 3211 Isolate Rhizosphere
98 2818991462 Terrabacter sp. 3264 Isolate Rhizosphere
99 2818991469 Terrabacter lapilli 3265 Isolate Rhizosphere
100 2857481737 Nocardioides sp. R-74106 Isolate Unclassified
101 2891968417 Nocardioides luteus SAI-037 Isolate Unclassified
102 2919446982 Phycicoccus sp. 3266 Isolate Rhizosphere
103 2919709256 Sphingobium xenophagum 4256 Isolate Unclassified
104 3001889506 Janibacter sp. YIM B02568 Isolate Unclassified
105 8054609563 Nocardioides astragali CGMCC 4.7327 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 78.01
Metatranscriptomes 1.42
Isolates 20.57

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.42
Nodule 0.71
Rhizoplane 11.35
Rhizosphere 65.96
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207674_10332835 3300026116 Bacteria 1468
2 Ga0070661_100142533 3300005344 Bacteria 1807
3 Ga0070679_100132401 3300005530 Bacteria 2474
4 Ga0070664_100018762 3300005564 Bacteria 5690
5 Ga0068856_100098455 3300005614 Bacteria 2914
6 Ga0068859_100014672 3300005617 Bacteria 7874
7 Ga0075363_100045562 3300006048 Bacteria 2326
8 Ga0157372_10335621 3300013307 Bacteria 1760
9 Ga0157372_10346110 3300013307 Bacteria 1732
10 Ga0163163_10152668 3300014325 Bacteria 2353
11 Ga0157380_10014591 3300014326 Bacteria 5752
12 Ga0206353_10733242 3300020082 Bacteria 4085
13 Ga0206353_11476957 3300020082 Bacteria 2894
14 Ga0207654_10129616 3300025911 Bacteria 1595
15 Ga0207674_10037942 3300026116 Bacteria 5005
16 Ga0316575_10000010 3300031665 Bacteria 51771
17 Ga0316575_10053630 3300031665 Bacteria 1606
18 Ga0316579_10001737 3300031691 Bacteria 8006
19 Ga0316576_10031806 3300031727 Bacteria 3746
20 Ga0316578_10001140 3300031728 Bacteria 10429
21 Ga0316577_10154022 3300031733 Bacteria 1296
22 Ga0307416_100154563 3300032002 Bacteria 2110
23 Ga0316583_10036724 3300032133 Bacteria 1737
24 Ga0316583_10044907 3300032133 Bacteria 1561
25 Ga0316585_10000802 3300032137 Bacteria 7927
26 Ga0316574_0001582 3300035398 Bacteria 10884
27 Ga0316574_0007258 3300035398 Bacteria 6061
28 Ga0316582_0001579 3300036647 Bacteria 10147
29 Ga0316584_0022669 3300036712 Bacteria 4582
30 Ga0395900_0039735 3300037418 Bacteria 4847
31 Ga0395898_0020767 3300037466 Bacteria 6667
32 Ga0395901_0006787 3300038443 Bacteria 11562
33 Ga0395901_0011024 3300038443 Bacteria 9157
34 Ga0395901_0114043 3300038443 Bacteria 2839
35 Ga0439457_008833 3300042014 Bacteria 2364
36 Ga0466972_0069279 3300044658 Bacteria 1685
37 Ga0466966_0028566 3300044684 Bacteria 3631
38 Ga0466966_0144089 3300044684 Bacteria 1455
39 Ga0466963_0022462 3300044694 Bacteria 3996
40 Ga0466963_0048192 3300044694 Bacteria 2814
41 Ga0466968_0062058 3300044735 Bacteria 1613
42 Ga0466970_0023147 3300044765 Bacteria 3243
43 Ga0466957_0002955 3300044842 Bacteria 9218
44 Ga0466958_0028022 3300045836 Bacteria 3337
45 Ga0466967_0202140 3300045976 Bacteria 1882
46 Ga0495627_014724 3300046453 Bacteria 2721
47 Ga0495580_0168457 3300046472 Bacteria 1515
48 Ga0496100_0083691 3300048903 Bacteria 2161
49 Ga0496101_0054182 3300048904 Bacteria 2896
50 Ga0496102_0063186 3300048905 Bacteria 3389
51 Ga0496103_0010665 3300048906 Bacteria 5437
52 Ga0496104_0061960 3300048907 Bacteria 3546
53 Ga0496104_0079657 3300048907 Bacteria 3122
54 Ga0496105_0013776 3300048908 Bacteria 6421
55 Ga0496109_0022486 3300048912 Bacteria 5586
56 Ga0496109_0290236 3300048912 Bacteria 1542
57 Ga0496110_0001486 3300048913 Bacteria 16981
58 Ga0496110_0072537 3300048913 Bacteria 3055
59 Ga0496111_0004360 3300048914 Bacteria 8929
60 Ga0496113_0018222 3300048916 Bacteria 4889
61 Ga0496114_0002956 3300048917 Bacteria 13030
62 Ga0496114_0013599 3300048917 Bacteria 6526
63 Ga0496114_0286578 3300048917 Bacteria 1453
64 Ga0496121_0008473 3300048924 Bacteria 12071
65 Ga0496122_0004513 3300048925 Bacteria 17191
66 Ga0496123_0001160 3300048926 Bacteria 39065
67 Ga0496124_0005518 3300048927 Bacteria 14201
68 Ga0496125_0003000 3300048928 Bacteria 21125
69 Ga0496126_0000006 3300048929 Bacteria 798804
70 Ga0501031_0036532 3300049568 Bacteria 3204
71 Ga0501033_0003656 3300049570 Bacteria 12537
72 Ga0501033_0054067 3300049570 Bacteria 2971
73 Ga0501036_0007062 3300049572 Bacteria 9138
74 Ga0501036_0065737 3300049572 Bacteria 3068
75 Ga0501037_0010717 3300049573 Bacteria 6737
76 Ga0501037_0013040 3300049573 Bacteria 6128
77 Ga0501037_0029795 3300049573 Bacteria 4032
78 Ga0501037_0236105 3300049573 Bacteria 1283
79 Ga0501038_0000978 3300049574 Bacteria 25638
80 Ga0501038_0039253 3300049574 Bacteria 4141
81 Ga0501038_0176347 3300049574 Bacteria 1727
82 Ga0501039_0030916 3300049575 Bacteria 4129
83 Ga0501039_0041924 3300049575 Bacteria 3537
84 Ga0501039_0053943 3300049575 Bacteria 3111
85 Ga0501040_0047014 3300049576 Bacteria 2946
86 Ga0501040_0121734 3300049576 Bacteria 1831
87 Ga0501043_0015707 3300049579 Bacteria 5935
88 Ga0501046_0007799 3300049580 Bacteria 9391
89 Ga0501046_0025945 3300049580 Bacteria 4790
90 Ga0501046_0034585 3300049580 Bacteria 4076
91 Ga0501046_0108599 3300049580 Bacteria 2122
92 Ga0501047_0010259 3300049581 Bacteria 8861
93 Ga0501047_0036876 3300049581 Bacteria 4725
94 Ga0501048_0001597 3300049582 Bacteria 17210
95 Ga0501048_0013140 3300049582 Bacteria 6146
96 Ga0501048_0107937 3300049582 Bacteria 1965
97 Ga0501070_0177834 3300049586 Bacteria 1751
98 Ga0501071_0001400 3300049587 Bacteria 13851
99 Ga0501072_0008499 3300049588 Bacteria 7791
100 Ga0501072_0245036 3300049588 Bacteria 1428
101 Ga0501074_0036197 3300049590 Bacteria 3576
102 Ga0501076_0003749 3300049592 Bacteria 10686
103 Ga0501080_0281673 3300049742 Bacteria 1511
104 Ga0501035_0002093 3300049822 Bacteria 19862
105 Ga0501035_0110794 3300049822 Bacteria 2406
106 Ga0501035_0207505 3300049822 Bacteria 1678
107 Ga0501044_0002404 3300049823 Bacteria 21352
108 Ga0501044_0062691 3300049823 Bacteria 3799
109 Ga0501044_0217427 3300049823 Bacteria 1862
110 Ga0495619_0046803 3300053085 Bacteria 2846
111 Ga0500568_0002691 3300053139 Bacteria 10303
112 Ga0466962_0007440 3300061719 Bacteria 5256
113 2643850728 2643221567 Bacteria 4163945
114 2644134482 2643221624 Bacteria 4384879
115 2644229067 2643221641 Bacteria 4490190
116 2644446521 2643221679 Bacteria 3839507
117 2644609043 2643221711 Bacteria 4865335
118 2729905571 2728369276 Bacteria 5610032
119 2738692469 2738541272 Bacteria 6848551
120 2739323559 2738543027 Bacteria 6409078
121 2739608967 2739367654 Bacteria 6049412
122 2760303584 2758568522 Bacteria 5953541
123 2760622559 2758568621 Bacteria 5967089
124 2774393534 2773857762 Bacteria 5971770
125 2784472599 2784132109 Bacteria 3141763
126 2808873479 2808606365 Bacteria 4301966
127 2809027304 2808606394 Bacteria 6248540
128 2809195577 2808606439 Bacteria 5952208
129 2812332250 2811994874 Bacteria 5367947
130 2812350473 2811994878 Bacteria 5992952
131 2812374194 2811994882 Bacteria 4688362
132 2819426890 2818991318 Bacteria 5266538
133 2819665887 2818991458 Bacteria 4794049
134 2819692599 2818991462 Bacteria 4320267
135 2819728842 2818991469 Bacteria 4644110
136 2857483484 2857481737 Bacteria 4761446
137 2891971923 2891968417 Bacteria 5821697
138 2919449773 2919446982 Bacteria 3994487
139 2919709614 2919709256 Bacteria 4318106
140 3001891002 3001889506 Bacteria 2975194
141 8054612569 8054609563 Bacteria 5170090
142 Ga0207674_10332835
143 Ga0070661_100142533
144 Ga0070679_100132401
145 Ga0070664_100018762
146 Ga0068856_100098455
147 Ga0068859_100014672
148 Ga0075363_100045562
149 Ga0157372_10335621
150 Ga0157372_10346110
151 Ga0163163_10152668
152 Ga0157380_10014591
153 Ga0206353_10733242
154 Ga0206353_11476957
155 Ga0207654_10129616
156 Ga0207674_10037942
157 Ga0316575_10000010
158 Ga0316575_10053630
159 Ga0316579_10001737
160 Ga0316576_10031806
161 Ga0316578_10001140
162 Ga0316577_10154022
163 Ga0307416_100154563
164 Ga0316583_10036724
165 Ga0316583_10044907
166 Ga0316585_10000802
167 Ga0316574_0001582
168 Ga0316574_0007258
169 Ga0316582_0001579
170 Ga0316584_0022669
171 Ga0395900_0039735
172 Ga0395898_0020767
173 Ga0395901_0006787
174 Ga0395901_0011024
175 Ga0395901_0114043
176 Ga0439457_008833
177 Ga0466972_0069279
178 Ga0466966_0028566
179 Ga0466966_0144089
180 Ga0466963_0022462
181 Ga0466963_0048192
182 Ga0466968_0062058
183 Ga0466970_0023147
184 Ga0466957_0002955
185 Ga0466958_0028022
186 Ga0466967_0202140
187 Ga0495627_014724
188 Ga0495580_0168457
189 Ga0496100_0083691
190 Ga0496101_0054182
191 Ga0496102_0063186
192 Ga0496103_0010665
193 Ga0496104_0061960
194 Ga0496104_0079657
195 Ga0496105_0013776
196 Ga0496109_0022486
197 Ga0496109_0290236
198 Ga0496110_0001486
199 Ga0496110_0072537
200 Ga0496111_0004360
201 Ga0496113_0018222
202 Ga0496114_0002956
203 Ga0496114_0013599
204 Ga0496114_0286578
205 Ga0496121_0008473
206 Ga0496122_0004513
207 Ga0496123_0001160
208 Ga0496124_0005518
209 Ga0496125_0003000
210 Ga0496126_0000006
211 Ga0501031_0036532
212 Ga0501033_0003656
213 Ga0501033_0054067
214 Ga0501036_0007062
215 Ga0501036_0065737
216 Ga0501037_0010717
217 Ga0501037_0013040
218 Ga0501037_0029795
219 Ga0501037_0236105
220 Ga0501038_0000978
221 Ga0501038_0039253
222 Ga0501038_0176347
223 Ga0501039_0030916
224 Ga0501039_0041924
225 Ga0501039_0053943
226 Ga0501040_0047014
227 Ga0501040_0121734
228 Ga0501043_0015707
229 Ga0501046_0007799
230 Ga0501046_0025945
231 Ga0501046_0034585
232 Ga0501046_0108599
233 Ga0501047_0010259
234 Ga0501047_0036876
235 Ga0501048_0001597
236 Ga0501048_0013140
237 Ga0501048_0107937
238 Ga0501070_0177834
239 Ga0501071_0001400
240 Ga0501072_0008499
241 Ga0501072_0245036
242 Ga0501074_0036197
243 Ga0501076_0003749
244 Ga0501080_0281673
245 Ga0501035_0002093
246 Ga0501035_0110794
247 Ga0501035_0207505
248 Ga0501044_0002404
249 Ga0501044_0062691
250 Ga0501044_0217427
251 Ga0495619_0046803
252 Ga0500568_0002691
253 Ga0466962_0007440
254 2643850728
255 2644134482
256 2644229067
257 2644446521
258 2644609043
259 2729905571
260 2738692469
261 2739323559
262 2739608967
263 2760303584
264 2760622559
265 2774393534
266 2784472599
267 2808873479
268 2809027304
269 2809195577
270 2812332250
271 2812350473
272 2812374194
273 2819426890
274 2819665887
275 2819692599
276 2819728842
277 2857483484
278 2891971923
279 2919449773
280 2919709614
281 3001891002
282 8054612569

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF08436

DXP_redisom_C

1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain

180

263

0.99

PF13288

DXPR_C

DXP reductoisomerase C-terminal domain

295

417

0.93

PF02670

DXP_reductoisom

1-deoxy-D-xylulose 5-phosphate reductoisomerase

23

168

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
4aic-assembly1.cif.gz_A x-ray structure of 1-deoxy-d-xylulose 5-phosphate reductoisomerase, dxr, rv2870c, from mycobacterium tuberculosis, in complex with fosmidomycin, manganese and nadph 0.9607 26 392
2jcx-assembly1.cif.gz_A x-ray structure of mutant 1-deoxy-d-xylulose 5-phosphate reductoisomerase, dxr, rv2870c, from mycobacterium tuberculosis, in complex with fosmidomycin and nadph 0.9601 26 392
3zi0-assembly1.cif.gz_A structure of mycobacterium tuberculosis dxr in complex with a fosmidomycin analogue 0.9562 26 390
2y1d-assembly1.cif.gz_A x-ray structure of 1-deoxy-d-xylulose 5-phosphate reductoisomerase, dxr, rv2870c, from mycobacterium tuberculosis, in complex with a 3,4- dichlorophenyl-substituted fosmidomycin analogue and manganese. 0.955 26 392
4ooe-assembly2.cif.gz_C m. tuberculosis 1-deoxy-d-xylulose-5-phosphate reductoisomerase w203y mutant bound to fosmidomycin and nadph 0.9524 26 391
ID Description Score Start End Superfamily
3zi0A01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9578 26 149 3.40.50.720
5ks1B03 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.9574 302 392 1.10.1740.10
5kqoB03 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.9567 302 392 1.10.1740.10
5krrB03 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.9551 302 392 1.10.1740.10
5ks1A03 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.9535 302 392 1.10.1740.10
ID Description Score Start End GO Terms
AF-A0A2E2Q1Y7-F1-model_v4 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXP reductoisomerase) (EC 1.1.1.267) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) 0.9893 25 391 GO:0016853
GO:0030145
GO:0030604
GO:0051484
GO:0070402
AF-A0A7W4YZ20-F1-model_v4 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXP reductoisomerase) (EC 1.1.1.267) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) 0.9888 27 392 GO:0016853
GO:0030145
GO:0030604
GO:0051484
GO:0070402
AF-A0A2W6D792-F1-model_v4 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXP reductoisomerase) (EC 1.1.1.267) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) 0.9882 106 390 GO:0016627
GO:0016853
GO:0030145
GO:0030604
GO:0050660
GO:0051484
GO:0070402
AF-A0A6B3I8M4-F1-model_v4 1-deoxy-D-xylulose-5-phosphate reductoisomerase (EC 1.1.1.267) 0.9866 143 263 GO:0016853
GO:0030145
GO:0030604
GO:0051484
GO:0070402
AF-A0A353FVW7-F1-model_v4 deleted 0.9856 83 391

Map