F181076
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 140 | 107 | 280 | 449 |
Family's Representative Sequence
| Representative Sequence | iso_pu_bacteria|2895880812|2895888151 |
| Length | 490 |
| Sequence | PSTQAVWWLRRDLRLDDNPALLAAAESGRVLALFVLDDALRRPSGPVRLAFLHRCLRDLDAQLGGRLCMRTGDPVDVVPALAREIAADAVHLAADHGPYGSRRDKLVERALAADGRQLVRTGSPYAVAPGRLRKADGTSYRVFTPFYRAWKEHGWRGPAIPADPVWLQPADLDGGSEPIPADPELGGTELPPAGEHAAHERLRAFLTESLAGYAAHRDEPAAAVTSRLSPYLKWGCIHPRTVLDALRTATATATASESGDAVPGWSGASRAGGAGGAGAAGGGGGLAGSAEKFRSELAWREFYADVLAGTPSSARTDLTDTLAALAYEPPGDTFEAWKWGRTGYPIVDAGMRQLLAEGWVHNRVRMIEASFVCKDLHVHWTHGARWYLERLVDGDLASNNHGWQWTAGTGTDAAPYFRVFNPVSQGRKFDPAGEYIRRWVPELRGLPPDAVHEPWKLPAGPPNGYPRPVVDHAVERREALDRHARARHHD |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300001977 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5 | Metagenome | Rhizosphere |
| 2 | 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Metagenome | Rhizosphere |
| 3 | 3300005337 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG | Metagenome | Rhizosphere |
| 4 | 3300005339 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG | Metagenome | Rhizosphere |
| 5 | 3300005366 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG | Metagenome | Rhizosphere |
| 6 | 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Metagenome | Rhizosphere |
| 7 | 3300005441 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG | Metagenome | Rhizosphere |
| 8 | 3300005456 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG | Metagenome | Rhizosphere |
| 9 | 3300005530 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG | Metagenome | Rhizosphere |
| 10 | 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Metagenome | Rhizosphere |
| 11 | 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Metagenome | Rhizosphere |
| 12 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 13 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 14 | 3300005842 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 | Metagenome | Rhizosphere |
| 15 | 3300005843 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 | Metagenome | Rhizosphere |
| 16 | 3300005844 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 | Metagenome | Rhizosphere |
| 17 | 3300005937 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 | Metagenome | Rhizosphere |
| 18 | 3300006038 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 | Metagenome | Endosphere |
| 19 | 3300009094 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 20 | 3300009098 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG | Metagenome | Rhizosphere |
| 21 | 3300009101 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG | Metagenome | Rhizosphere |
| 22 | 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Metagenome | Rhizosphere |
| 23 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 24 | 3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Metagenome | Rhizosphere |
| 25 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 26 | 3300011119 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG | Metagenome | Rhizosphere |
| 27 | 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Metagenome | Rhizosphere |
| 28 | 3300013308 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG | Metagenome | Rhizosphere |
| 29 | 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Metagenome | Rhizosphere |
| 30 | 3300014745 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG | Metagenome | Rhizosphere |
| 31 | 3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Metagenome | Rhizosphere |
| 32 | 3300025900 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 33 | 3300025919 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 34 | 3300025921 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 35 | 3300025927 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 36 | 3300025929 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 37 | 3300025941 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 38 | 3300025944 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 39 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 40 | 3300025961 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 41 | 3300025972 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 42 | 3300025986 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 43 | 3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 44 | 3300026041 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 45 | 3300026075 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 46 | 3300026142 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 47 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 48 | 3300028381 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 49 | 3300031251 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG | Metagenome | Rhizosphere |
| 50 | 3300031665 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 | Metagenome | Rhizosphere |
| 51 | 3300031728 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC | Metagenome | Rhizosphere |
| 52 | 3300031852 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 | Metagenome | Rhizosphere |
| 53 | 3300032133 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA | Metagenome | Rhizosphere |
| 54 | 3300035398 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 | Metagenome | Rhizosphere |
| 55 | 3300036712 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA | Metagenome | Rhizosphere |
| 56 | 3300037588 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA | Metagenome | Rhizosphere |
| 57 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 58 | 3300039062 | Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 | Metagenome | Unclassified |
| 59 | 3300042014 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 | Metagenome | Rhizosphere |
| 60 | 3300044656 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R | Metagenome | Rhizosphere |
| 61 | 3300044706 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R | Metagenome | Rhizosphere |
| 62 | 3300045976 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R | Metagenome | Rhizosphere |
| 63 | 3300046473 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere | Metagenome | Rhizosphere |
| 64 | 3300046524 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere | Metagenome | Rhizosphere |
| 65 | 3300047321 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere | Metagenome | Rhizosphere |
| 66 | 3300048904 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled | Metagenome | Rhizoplane |
| 67 | 3300048905 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 | Metagenome | Rhizoplane |
| 68 | 3300048906 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 | Metagenome | Rhizoplane |
| 69 | 3300048907 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 | Metagenome | Rhizoplane |
| 70 | 3300048908 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 | Metagenome | Rhizoplane |
| 71 | 3300048910 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 | Metagenome | Rhizoplane |
| 72 | 3300048912 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled | Metagenome | Rhizoplane |
| 73 | 3300048914 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 | Metagenome | Rhizoplane |
| 74 | 3300048916 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 | Metagenome | Rhizoplane |
| 75 | 3300048917 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 | Metagenome | Rhizoplane |
| 76 | 3300048918 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 | Metagenome | Rhizoplane |
| 77 | 3300048922 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 | Metagenome | Unclassified |
| 78 | 3300048923 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 | Metagenome | Unclassified |
| 79 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 80 | 3300049574 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 81 | 3300049575 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 82 | 3300049583 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 | Metagenome | Rhizosphere |
| 83 | 3300049584 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 | Metagenome | Rhizosphere |
| 84 | 3300049586 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 | Metagenome | Rhizosphere |
| 85 | 3300049587 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 | Metagenome | Rhizosphere |
| 86 | 3300049588 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 | Metagenome | Rhizosphere |
| 87 | 3300049589 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 | Metagenome | Rhizosphere |
| 88 | 3300049742 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 | Metagenome | Rhizosphere |
| 89 | 3300049744 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 | Metagenome | Rhizosphere |
| 90 | 3300049824 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 91 | 3300050490 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation | Metagenome | Endosphere |
| 92 | 3300050491 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation | Metagenome | Endosphere |
| 93 | 3300050492 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation | Metagenome | Endosphere |
| 94 | 3300050496 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation | Metagenome | Endosphere |
| 95 | 3300053085 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere | Metagenome | Rhizosphere |
| 96 | 3300054114 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 | Metagenome | Rhizosphere |
| 97 | 2895880812 | Frankia sp. BMG5.11 | Isolate | Unclassified |
| 98 | 2579778521 | Frankia torreyi CpI1-S | Isolate | Unclassified |
| 99 | 2619618881 | Frankia sp. ACN1ag | Isolate | Unclassified |
| 100 | 2619619003 | Frankia sp. CpI1-P | Isolate | Nodule |
| 101 | 2626541554 | Frankia sp. AvcI.1 | Isolate | Nodule |
| 102 | 2671180195 | Frankia sp. CcI49 | Isolate | Nodule |
| 103 | 2687453743 | Frankia colletiae Cc1.17 | Isolate | Nodule |
| 104 | 2773857922 | Frankia sp. CcI49 | Isolate | Nodule |
| 105 | 8054913762 | Frankia gtarii Agncl-10 | Isolate | Nodule |
| 106 | 8054920844 | Frankia tisae Agncl-8 | Isolate | Nodule |
| 107 | 8055157932 | Frankia umida Ag45/Mut15 | Isolate | Nodule |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 92.14 |
| Metatranscriptomes | 0 |
| Isolates | 7.86 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 5 |
| Nodule | 5.71 |
| Rhizoplane | 15.71 |
| Rhizosphere | 67.86 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 0 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | JGI24746J21847_1005080 | 3300001977 | Bacteria | 2060 |
| 2 | Ga0070683_100003158 | 3300005329 | Bacteria | 13282 |
| 3 | Ga0070683_100006135 | 3300005329 | Bacteria | 10076 |
| 4 | Ga0070683_100011548 | 3300005329 | Bacteria | 7644 |
| 5 | Ga0070682_100090022 | 3300005337 | Bacteria | 2005 |
| 6 | Ga0070660_100162255 | 3300005339 | Bacteria | 1801 |
| 7 | Ga0070659_100002691 | 3300005366 | Bacteria | 12630 |
| 8 | Ga0070714_100000348 | 3300005435 | Bacteria | 34712 |
| 9 | Ga0070700_100000218 | 3300005441 | Bacteria | 31966 |
| 10 | Ga0070678_100061876 | 3300005456 | Bacteria | 2761 |
| 11 | Ga0070679_100002368 | 3300005530 | Bacteria | 17089 |
| 12 | Ga0070684_100020302 | 3300005535 | Bacteria | 5511 |
| 13 | Ga0070684_100183975 | 3300005535 | Bacteria | 1900 |
| 14 | Ga0068853_100015745 | 3300005539 | Bacteria | 6211 |
| 15 | Ga0070665_100004009 | 3300005548 | Bacteria | 15527 |
| 16 | Ga0068852_100251706 | 3300005616 | Bacteria | 1693 |
| 17 | Ga0068858_100000073 | 3300005842 | Bacteria | 104882 |
| 18 | Ga0068858_100071125 | 3300005842 | Bacteria | 3226 |
| 19 | Ga0068860_100202284 | 3300005843 | Bacteria | 1925 |
| 20 | Ga0068862_100111251 | 3300005844 | Bacteria | 2404 |
| 21 | Ga0081455_10017130 | 3300005937 | Bacteria | 6961 |
| 22 | Ga0075365_10034024 | 3300006038 | Bacteria | 3288 |
| 23 | Ga0111539_10167607 | 3300009094 | Bacteria | 2567 |
| 24 | Ga0105245_10008202 | 3300009098 | Bacteria | 9133 |
| 25 | Ga0105245_10078228 | 3300009098 | Bacteria | 3018 |
| 26 | Ga0105247_10000024 | 3300009101 | Bacteria | 210946 |
| 27 | Ga0105248_10045500 | 3300009177 | Bacteria | 4921 |
| 28 | Ga0105238_10064438 | 3300009551 | Bacteria | 3665 |
| 29 | Ga0105249_10022443 | 3300009553 | Bacteria | 5653 |
| 30 | Ga0105239_10050364 | 3300010375 | Bacteria | 4568 |
| 31 | Ga0105239_10233461 | 3300010375 | Bacteria | 2064 |
| 32 | Ga0105246_10002779 | 3300011119 | Bacteria | 10596 |
| 33 | Ga0157372_10000043 | 3300013307 | Bacteria | 153958 |
| 34 | Ga0157372_10207980 | 3300013307 | Bacteria | 2267 |
| 35 | Ga0157375_10048468 | 3300013308 | Bacteria | 4156 |
| 36 | Ga0163163_10027500 | 3300014325 | Bacteria | 5450 |
| 37 | Ga0163163_10198042 | 3300014325 | Bacteria | 2057 |
| 38 | Ga0157377_10130579 | 3300014745 | Bacteria | 1534 |
| 39 | Ga0157379_10000289 | 3300014968 | Bacteria | 39807 |
| 40 | Ga0157379_10029377 | 3300014968 | Bacteria | 4890 |
| 41 | Ga0157379_10066508 | 3300014968 | Bacteria | 3222 |
| 42 | Ga0207710_10000045 | 3300025900 | Bacteria | 210957 |
| 43 | Ga0207710_10000249 | 3300025900 | Bacteria | 45249 |
| 44 | Ga0207657_10038103 | 3300025919 | Bacteria | 4284 |
| 45 | Ga0207657_10070052 | 3300025919 | Bacteria | 2973 |
| 46 | Ga0207652_10021874 | 3300025921 | Bacteria | 5282 |
| 47 | Ga0207687_10029746 | 3300025927 | Bacteria | 3676 |
| 48 | Ga0207664_10000009 | 3300025929 | Bacteria | 299246 |
| 49 | Ga0207711_10163851 | 3300025941 | Bacteria | 2014 |
| 50 | Ga0207661_10017285 | 3300025944 | Bacteria | 5333 |
| 51 | Ga0207661_10108539 | 3300025944 | Bacteria | 2343 |
| 52 | Ga0207661_10112945 | 3300025944 | Bacteria | 2301 |
| 53 | Ga0207667_10244756 | 3300025949 | Bacteria | 1835 |
| 54 | Ga0207712_10065070 | 3300025961 | Bacteria | 2601 |
| 55 | Ga0207668_10124659 | 3300025972 | Bacteria | 1957 |
| 56 | Ga0207658_10018901 | 3300025986 | Bacteria | 4766 |
| 57 | Ga0207703_10000025 | 3300026035 | Bacteria | 214692 |
| 58 | Ga0207703_10094770 | 3300026035 | Bacteria | 2517 |
| 59 | Ga0207639_10003670 | 3300026041 | Bacteria | 10314 |
| 60 | Ga0207708_10000011 | 3300026075 | Bacteria | 214227 |
| 61 | Ga0207698_10072259 | 3300026142 | Bacteria | 2742 |
| 62 | Ga0268266_10002912 | 3300028379 | Bacteria | 17710 |
| 63 | Ga0268264_10002542 | 3300028381 | Bacteria | 16015 |
| 64 | Ga0265327_10000477 | 3300031251 | Bacteria | 70613 |
| 65 | Ga0316575_10003086 | 3300031665 | Bacteria | 5689 |
| 66 | Ga0316578_10049997 | 3300031728 | Bacteria | 2444 |
| 67 | Ga0307410_10127351 | 3300031852 | Bacteria | 1866 |
| 68 | Ga0316583_10006420 | 3300032133 | Bacteria | 4222 |
| 69 | Ga0316574_0151610 | 3300035398 | Bacteria | 1493 |
| 70 | Ga0316584_0016739 | 3300036712 | Bacteria | 5260 |
| 71 | Ga0316581_0005815 | 3300037588 | Bacteria | 3238 |
| 72 | Ga0395901_0091738 | 3300038443 | Bacteria | 3180 |
| 73 | Ga0400483_007716 | 3300039062 | Bacteria | 16848 |
| 74 | Ga0400483_153519 | 3300039062 | Bacteria | 29541 |
| 75 | Ga0439457_009354 | 3300042014 | Bacteria | 2284 |
| 76 | Ga0466969_0022939 | 3300044656 | Bacteria | 3218 |
| 77 | Ga0466964_0011359 | 3300044706 | Bacteria | 3363 |
| 78 | Ga0466967_0033541 | 3300045976 | Bacteria | 4347 |
| 79 | Ga0466967_0046950 | 3300045976 | Bacteria | 3763 |
| 80 | Ga0495582_0148218 | 3300046473 | Bacteria | 1332 |
| 81 | Ga0495648_0084912 | 3300046524 | Bacteria | 1790 |
| 82 | Ga0495676_0028327 | 3300047321 | Bacteria | 4784 |
| 83 | Ga0496101_0069760 | 3300048904 | Bacteria | 2572 |
| 84 | Ga0496101_0138642 | 3300048904 | Bacteria | 1852 |
| 85 | Ga0496102_0013592 | 3300048905 | Bacteria | 7056 |
| 86 | Ga0496102_0159022 | 3300048905 | Bacteria | 2125 |
| 87 | Ga0496103_0040168 | 3300048906 | Bacteria | 2875 |
| 88 | Ga0496104_0006861 | 3300048907 | Bacteria | 10037 |
| 89 | Ga0496104_0034681 | 3300048907 | Bacteria | 4708 |
| 90 | Ga0496105_0004845 | 3300048908 | Bacteria | 10163 |
| 91 | Ga0496107_0022087 | 3300048910 | Bacteria | 4495 |
| 92 | Ga0496109_0031276 | 3300048912 | Bacteria | 4775 |
| 93 | Ga0496109_0042593 | 3300048912 | Bacteria | 4113 |
| 94 | Ga0496111_0011340 | 3300048914 | Bacteria | 6000 |
| 95 | Ga0496113_0083636 | 3300048916 | Bacteria | 2449 |
| 96 | Ga0496114_0003818 | 3300048917 | Bacteria | 11618 |
| 97 | Ga0496114_0006625 | 3300048917 | Bacteria | 9129 |
| 98 | Ga0496114_0029434 | 3300048917 | Bacteria | 4514 |
| 99 | Ga0496114_0029530 | 3300048917 | Bacteria | 4508 |
| 100 | Ga0496114_0030630 | 3300048917 | Bacteria | 4427 |
| 101 | Ga0496114_0096776 | 3300048917 | Bacteria | 2513 |
| 102 | Ga0496114_0250753 | 3300048917 | Bacteria | 1557 |
| 103 | Ga0496115_0027306 | 3300048918 | Bacteria | 4463 |
| 104 | Ga0496115_0103287 | 3300048918 | Bacteria | 2338 |
| 105 | Ga0496119_0004154 | 3300048922 | Bacteria | 14563 |
| 106 | Ga0496120_0000664 | 3300048923 | Bacteria | 50585 |
| 107 | Ga0496126_0000007 | 3300048929 | Bacteria | 787364 |
| 108 | Ga0501038_0240824 | 3300049574 | Bacteria | 1436 |
| 109 | Ga0501039_0076130 | 3300049575 | Bacteria | 2609 |
| 110 | Ga0501067_0001852 | 3300049583 | Bacteria | 11638 |
| 111 | Ga0501067_0014977 | 3300049583 | Bacteria | 4291 |
| 112 | Ga0501067_0016032 | 3300049583 | Bacteria | 4144 |
| 113 | Ga0501068_0004395 | 3300049584 | Bacteria | 7670 |
| 114 | Ga0501070_0035985 | 3300049586 | Bacteria | 4134 |
| 115 | Ga0501070_0080896 | 3300049586 | Bacteria | 2687 |
| 116 | Ga0501071_0006585 | 3300049587 | Bacteria | 7545 |
| 117 | Ga0501072_0062951 | 3300049588 | Bacteria | 2926 |
| 118 | Ga0501073_0014572 | 3300049589 | Bacteria | 5712 |
| 119 | Ga0501080_0082529 | 3300049742 | Bacteria | 2985 |
| 120 | Ga0501083_0067235 | 3300049744 | Bacteria | 2386 |
| 121 | Ga0501045_0145997 | 3300049824 | Bacteria | 1760 |
| 122 | nmdc:mga03n38_12433_c1 | 3300050490 | Bacteria | 3203 |
| 123 | nmdc:mga00v17_34266_c1 | 3300050491 | Bacteria | 3014 |
| 124 | nmdc:mga0yw44_23671_c1 | 3300050492 | Bacteria | 3464 |
| 125 | nmdc:mga0yw44_61343_c1 | 3300050492 | Bacteria | 2307 |
| 126 | nmdc:mga0yw44_72125_c1 | 3300050492 | Bacteria | 2146 |
| 127 | nmdc:mga07m45_97223_c1 | 3300050496 | Bacteria | 1690 |
| 128 | Ga0495619_0008399 | 3300053085 | Bacteria | 6530 |
| 129 | Ga0501084_0058033 | 3300054114 | Bacteria | 3238 |
| 130 | 2895888151 | 2895880812 | Bacteria | 11255272 |
| 131 | 2579854921 | 2579778521 | Bacteria | 7624758 |
| 132 | 2619853113 | 2619618881 | Bacteria | 7521104 |
| 133 | 2620351081 | 2619619003 | Bacteria | 7619552 |
| 134 | 2626637213 | 2626541554 | Bacteria | 7741902 |
| 135 | 2671837647 | 2671180195 | Bacteria | 9757215 |
| 136 | 2689992596 | 2687453743 | Bacteria | 8361025 |
| 137 | 2774855803 | 2773857922 | Bacteria | 9757215 |
| 138 | 8054916418 | 8054913762 | Bacteria | 7713009 |
| 139 | 8054921047 | 8054920844 | Bacteria | 7068637 |
| 140 | 8055161315 | 8055157932 | Bacteria | 6429399 |
| 141 | JGI24746J21847_1005080 | |||
| 142 | Ga0070683_100003158 | |||
| 143 | Ga0070683_100006135 | |||
| 144 | Ga0070683_100011548 | |||
| 145 | Ga0070682_100090022 | |||
| 146 | Ga0070660_100162255 | |||
| 147 | Ga0070659_100002691 | |||
| 148 | Ga0070714_100000348 | |||
| 149 | Ga0070700_100000218 | |||
| 150 | Ga0070678_100061876 | |||
| 151 | Ga0070679_100002368 | |||
| 152 | Ga0070684_100020302 | |||
| 153 | Ga0070684_100183975 | |||
| 154 | Ga0068853_100015745 | |||
| 155 | Ga0070665_100004009 | |||
| 156 | Ga0068852_100251706 | |||
| 157 | Ga0068858_100000073 | |||
| 158 | Ga0068858_100071125 | |||
| 159 | Ga0068860_100202284 | |||
| 160 | Ga0068862_100111251 | |||
| 161 | Ga0081455_10017130 | |||
| 162 | Ga0075365_10034024 | |||
| 163 | Ga0111539_10167607 | |||
| 164 | Ga0105245_10008202 | |||
| 165 | Ga0105245_10078228 | |||
| 166 | Ga0105247_10000024 | |||
| 167 | Ga0105248_10045500 | |||
| 168 | Ga0105238_10064438 | |||
| 169 | Ga0105249_10022443 | |||
| 170 | Ga0105239_10050364 | |||
| 171 | Ga0105239_10233461 | |||
| 172 | Ga0105246_10002779 | |||
| 173 | Ga0157372_10000043 | |||
| 174 | Ga0157372_10207980 | |||
| 175 | Ga0157375_10048468 | |||
| 176 | Ga0163163_10027500 | |||
| 177 | Ga0163163_10198042 | |||
| 178 | Ga0157377_10130579 | |||
| 179 | Ga0157379_10000289 | |||
| 180 | Ga0157379_10029377 | |||
| 181 | Ga0157379_10066508 | |||
| 182 | Ga0207710_10000045 | |||
| 183 | Ga0207710_10000249 | |||
| 184 | Ga0207657_10038103 | |||
| 185 | Ga0207657_10070052 | |||
| 186 | Ga0207652_10021874 | |||
| 187 | Ga0207687_10029746 | |||
| 188 | Ga0207664_10000009 | |||
| 189 | Ga0207711_10163851 | |||
| 190 | Ga0207661_10017285 | |||
| 191 | Ga0207661_10108539 | |||
| 192 | Ga0207661_10112945 | |||
| 193 | Ga0207667_10244756 | |||
| 194 | Ga0207712_10065070 | |||
| 195 | Ga0207668_10124659 | |||
| 196 | Ga0207658_10018901 | |||
| 197 | Ga0207703_10000025 | |||
| 198 | Ga0207703_10094770 | |||
| 199 | Ga0207639_10003670 | |||
| 200 | Ga0207708_10000011 | |||
| 201 | Ga0207698_10072259 | |||
| 202 | Ga0268266_10002912 | |||
| 203 | Ga0268264_10002542 | |||
| 204 | Ga0265327_10000477 | |||
| 205 | Ga0316575_10003086 | |||
| 206 | Ga0316578_10049997 | |||
| 207 | Ga0307410_10127351 | |||
| 208 | Ga0316583_10006420 | |||
| 209 | Ga0316574_0151610 | |||
| 210 | Ga0316584_0016739 | |||
| 211 | Ga0316581_0005815 | |||
| 212 | Ga0395901_0091738 | |||
| 213 | Ga0400483_007716 | |||
| 214 | Ga0400483_153519 | |||
| 215 | Ga0439457_009354 | |||
| 216 | Ga0466969_0022939 | |||
| 217 | Ga0466964_0011359 | |||
| 218 | Ga0466967_0033541 | |||
| 219 | Ga0466967_0046950 | |||
| 220 | Ga0495582_0148218 | |||
| 221 | Ga0495648_0084912 | |||
| 222 | Ga0495676_0028327 | |||
| 223 | Ga0496101_0069760 | |||
| 224 | Ga0496101_0138642 | |||
| 225 | Ga0496102_0013592 | |||
| 226 | Ga0496102_0159022 | |||
| 227 | Ga0496103_0040168 | |||
| 228 | Ga0496104_0006861 | |||
| 229 | Ga0496104_0034681 | |||
| 230 | Ga0496105_0004845 | |||
| 231 | Ga0496107_0022087 | |||
| 232 | Ga0496109_0031276 | |||
| 233 | Ga0496109_0042593 | |||
| 234 | Ga0496111_0011340 | |||
| 235 | Ga0496113_0083636 | |||
| 236 | Ga0496114_0003818 | |||
| 237 | Ga0496114_0006625 | |||
| 238 | Ga0496114_0029434 | |||
| 239 | Ga0496114_0029530 | |||
| 240 | Ga0496114_0030630 | |||
| 241 | Ga0496114_0096776 | |||
| 242 | Ga0496114_0250753 | |||
| 243 | Ga0496115_0027306 | |||
| 244 | Ga0496115_0103287 | |||
| 245 | Ga0496119_0004154 | |||
| 246 | Ga0496120_0000664 | |||
| 247 | Ga0496126_0000007 | |||
| 248 | Ga0501038_0240824 | |||
| 249 | Ga0501039_0076130 | |||
| 250 | Ga0501067_0001852 | |||
| 251 | Ga0501067_0014977 | |||
| 252 | Ga0501067_0016032 | |||
| 253 | Ga0501068_0004395 | |||
| 254 | Ga0501070_0035985 | |||
| 255 | Ga0501070_0080896 | |||
| 256 | Ga0501071_0006585 | |||
| 257 | Ga0501072_0062951 | |||
| 258 | Ga0501073_0014572 | |||
| 259 | Ga0501080_0082529 | |||
| 260 | Ga0501083_0067235 | |||
| 261 | Ga0501045_0145997 | |||
| 262 | nmdc:mga03n38_12433_c1 | |||
| 263 | nmdc:mga00v17_34266_c1 | |||
| 264 | nmdc:mga0yw44_23671_c1 | |||
| 265 | nmdc:mga0yw44_61343_c1 | |||
| 266 | nmdc:mga0yw44_72125_c1 | |||
| 267 | nmdc:mga07m45_97223_c1 | |||
| 268 | Ga0495619_0008399 | |||
| 269 | Ga0501084_0058033 | |||
| 270 | 2895888151 | |||
| 271 | 2579854921 | |||
| 272 | 2619853113 | |||
| 273 | 2620351081 | |||
| 274 | 2626637213 | |||
| 275 | 2671837647 | |||
| 276 | 2689992596 | |||
| 277 | 2774855803 | |||
| 278 | 8054916418 | |||
| 279 | 8054921047 | |||
| 280 | 8055161315 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 1owo-assembly1.cif.gz_A | data4:photoreduced dna photolyase / received x-rays dose 1.2 exp15 photons/mm2 | 0.9533 | 6 | 470 |
| 2e0i-assembly2.cif.gz_B | crystal structure of archaeal photolyase from sulfolobus tokodaii with two fad molecules: implication of a novel light-harvesting cofactor | 0.9374 | 7 | 469 |
| 1owo-assembly1.cif.gz_A | data4:photoreduced dna photolyase / received x-rays dose 1.2 exp15 photons/mm2 | 0.9374 | 6 | 470 |
| 1u3d-assembly1.cif.gz_A | crystal structure of the phr domain of cryptochrome 1 from arabidopsis thaliana with amppnp bound | 0.9322 | 8 | 471 |
| 2e0i-assembly2.cif.gz_B | crystal structure of archaeal photolyase from sulfolobus tokodaii with two fad molecules: implication of a novel light-harvesting cofactor | 0.9311 | 7 | 469 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 1owlA02 | Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; | 0.9754 | 134 | 291 | 1.25.40.80 |
| 1owlA02 | Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; | 0.9599 | 134 | 291 | 1.25.40.80 |
| af_F1R2R7_20_151_3.40.50.620 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs | 0.9483 | 6 | 132 | 3.40.50.620 |
| 3cvvA01 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs | 0.9436 | 6 | 132 | 3.40.50.620 |
| 2xrzA02 | Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; | 0.9421 | 201 | 293 | 1.25.40.80 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A7Y1Y4E2-F1-model_v4 | Deoxyribodipyrimidine photo-lyase | 0.983 | 6 | 470 |
GO:0003677
GO:0003904 GO:0006139 GO:0006950 GO:0009416 GO:0071949 |
| AF-A0A7Y1Y4E2-F1-model_v4 | Deoxyribodipyrimidine photo-lyase | 0.9686 | 6 | 470 |
GO:0003677
GO:0003904 GO:0006139 GO:0006950 GO:0009416 GO:0071949 |
| AF-A0A3D3NXK9-F1-model_v4 | Deoxyribodipyrimidine photo-lyase | 0.9684 | 7 | 412 |
GO:0003677
GO:0003904 GO:0009416 GO:0071949 |
| AF-A0A353DJW5-F1-model_v4 | Deoxyribodipyrimidine photo-lyase | 0.9666 | 87 | 472 |
GO:0003677
GO:0003904 GO:0009416 GO:0071949 |
| AF-A0A395M359-F1-model_v4 | Deoxyribodipyrimidine photo-lyase | 0.9621 | 6 | 470 |
GO:0003677
GO:0003904 GO:0006139 GO:0006950 GO:0009416 GO:0071949 |