F179777

General Info

Members Datasets Scaffolds Average Seq Length
140 116 123 338

Family's Representative Sequence

Representative Sequence 3300025939|Ga0207665_10221126|Ga0207665_102211261
Length 395
Sequence MADRRGAADDRGVHPVTDVHTHYVPHGWPPLPGTGDQPSLRVDGPSEATIMLGDRAFRRITDSAWNADVRLAAMDRSGVDRQVLSPTPVFFAYDQPADAAATTAAIFNDLALGIAGEAPERLVPFCQVPLQDTDAACRELDRAVEAGHRGVEIGNHVGDRDLDDAGVVTFLQHCAAHDVPVFVHPWDMPDTPRTRRWMAQWLAGMPAETHLSILAMVLGGVFDQVDERLRICFAHGGGSFAFWLGRVENAWHGRRDVVGTSARPPREYVGRFSVDSAVFDASALRLLVDTLGVDHVLLGSDYPYPLGEAEAGTLIRTSPLLTDHERSQLLADNAAAYLGAEVPAWWQNWQLLWNIGAMSFAKVGAATADGDVRTADWRAVDTLTVIFVCTFVQQQ

Samples

Sample ID Description Type Environment
1 2508501039 Frankia saprophytica CN3 Isolate Nodule
2 2558860112 Pseudonocardia acaciae DSM 45401 Isolate Unclassified
3 2558860280 Kutzneria sp. 744 Isolate Unclassified
4 2643221561 Nocardioides sp. Root151 Isolate Unclassified
5 2643221649 Leifsonia sp. Root4 Isolate Unclassified
6 2643221696 Nocardioides sp. Root140 Isolate Unclassified
7 2675903060 Nonomuraea wenchangensis CGMCC 4.5598 Isolate Rhizosphere
8 2721755702 Agromyces sp. AR33 Isolate Rhizosphere
9 2773857921 Frankia asymbiotica NRRL B-16386 Isolate Nodule
10 2811994874 Nocardioides sp. SLBN-35 Isolate Unclassified
11 2917736166 Amycolatopsis dendrobii DR6-1 Isolate Unclassified
12 2929212328 Mycolicibacterium sp. R-73050 Hybrid assembly Isolate Unclassified
13 2984576629 Nocardioides zeae SORGH_AS913 Isolate Aerial Root
14 2990256926 Nocardioides zeae SORGH_AS885 Isolate Aerial Root
15 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
16 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
17 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
18 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
19 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
20 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
21 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
22 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
23 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
24 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
25 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
26 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
27 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
28 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
29 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
30 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
31 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
32 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
33 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
34 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
35 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
36 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
37 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
38 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
39 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
40 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
41 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
42 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
43 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
44 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
45 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
46 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
47 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
48 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
74 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
75 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
76 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
77 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
78 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
79 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
80 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
81 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
82 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
83 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
84 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
85 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
86 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
87 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
88 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
89 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
90 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
91 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
92 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
93 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
94 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
95 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
96 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
97 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
98 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
99 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
100 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
101 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
102 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
103 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
104 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
105 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
106 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
107 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
108 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
109 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
110 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
111 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
112 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
113 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
114 8002775197 Frankia nepalensis CN7 Isolate Nodule
115 8002784119 Frankia sp. AgB1.9 Isolate Nodule
116 8054472261 Pseudonocardia terrae RS11V-5 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 87.86
Metatranscriptomes 0
Isolates 12.14

Biome Distribution

Category Percentage (%)
Aerial Root 1.43
Bulb 0
Endosphere 0
Nodule 2.86
Rhizoplane 2.86
Rhizosphere 79.29
Stem 0
Stem Tuber 0
Unclassified 13.57

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10146768 3300003320 Bacteria 1353
2 Ga0070658_10282477 3300005327 Bacteria 1413
3 Ga0068868_100110455 3300005338 Bacteria 2233
4 Ga0070691_10068865 3300005341 Bacteria 1714
5 Ga0070661_100164873 3300005344 Bacteria 1680
6 Ga0070668_100025533 3300005347 Bacteria 4480
7 Ga0070669_100324606 3300005353 Bacteria 1244
8 Ga0070709_10250822 3300005434 Bacteria 1275
9 Ga0070663_100038891 3300005455 Bacteria 3321
10 Ga0070678_100302101 3300005456 Bacteria 1360
11 Ga0070662_100068694 3300005457 Bacteria 2606
12 Ga0070685_10045837 3300005466 Bacteria 2508
13 Ga0070685_10186882 3300005466 Bacteria 1338
14 Ga0070684_100203959 3300005535 Bacteria 1801
15 Ga0070664_100229855 3300005564 Bacteria 1662
16 Ga0068857_100072457 3300005577 Bacteria 3070
17 Ga0068854_100026658 3300005578 Bacteria 3974
18 Ga0068852_100050880 3300005616 Bacteria 3552
19 Ga0068859_100011502 3300005617 Bacteria 8897
20 Ga0068859_100104668 3300005617 Bacteria 2889
21 Ga0068859_100308580 3300005617 Bacteria 1676
22 Ga0068864_100223183 3300005618 Bacteria 1739
23 Ga0068860_100049031 3300005843 Bacteria 4025
24 Ga0068860_100105461 3300005843 Bacteria 2692
25 Ga0068862_100015493 3300005844 Bacteria 6331
26 Ga0068862_100067041 3300005844 Bacteria 3093
27 Ga0070717_10169428 3300006028 Bacteria 1899
28 Ga0075428_100006383 3300006844 Bacteria 13122
29 Ga0075430_100057199 3300006846 Bacteria 3280
30 Ga0075431_100004727 3300006847 Bacteria 13381
31 Ga0075431_100043404 3300006847 Bacteria 4640
32 Ga0097620_100011502 3300006931 Bacteria 8897
33 Ga0097620_100104668 3300006931 Bacteria 2889
34 Ga0097620_100308571 3300006931 Bacteria 1676
35 Ga0111539_10151300 3300009094 Bacteria 2716
36 Ga0105245_10037165 3300009098 Bacteria 4329
37 Ga0114129_10001023 3300009147 Bacteria 36518
38 Ga0105242_10442812 3300009176 Bacteria 1223
39 Ga0105248_10000063 3300009177 Bacteria 122399
40 Ga0157369_10007924 3300013105 Bacteria 12213
41 Ga0157372_10017756 3300013307 Bacteria 7637
42 Ga0157372_10133589 3300013307 Bacteria 2857
43 Ga0157372_10571011 3300013307 Bacteria 1318
44 Ga0207688_10016470 3300025901 Bacteria 4009
45 Ga0207688_10040868 3300025901 Bacteria 2578
46 Ga0207645_10009731 3300025907 Bacteria 6638
47 Ga0207643_10031252 3300025908 Bacteria 2967
48 Ga0207705_10253367 3300025909 Bacteria 1343
49 Ga0207662_10004325 3300025918 Bacteria 7462
50 Ga0207657_10083757 3300025919 Bacteria 2675
51 Ga0207694_10063623 3300025924 Bacteria 2874
52 Ga0207650_10126167 3300025925 Bacteria 1998
53 Ga0207706_10014448 3300025933 Bacteria 7156
54 Ga0207669_10148846 3300025937 Bacteria 1637
55 Ga0207665_10221126 3300025939 Bacteria 1388
56 Ga0207711_10000219 3300025941 Bacteria 61437
57 Ga0207689_10015564 3300025942 Bacteria 6442
58 Ga0207668_10044366 3300025972 Bacteria 3024
59 Ga0207640_10083287 3300025981 Bacteria 2193
60 Ga0207658_10023260 3300025986 Bacteria 4324
61 Ga0207658_10324520 3300025986 Bacteria 1334
62 Ga0207677_10087945 3300026023 Bacteria 2251
63 Ga0207677_10118098 3300026023 Bacteria 1989
64 Ga0207678_10029583 3300026067 Bacteria 4782
65 Ga0207641_10096870 3300026088 Bacteria 2592
66 Ga0207648_10261017 3300026089 Bacteria 1546
67 Ga0207674_10333272 3300026116 Bacteria 1467
68 Ga0207675_100018621 3300026118 Bacteria 6479
69 Ga0207683_10099884 3300026121 Bacteria 2590
70 Ga0207683_10161307 3300026121 Bacteria 2027
71 Ga0268265_10009815 3300028380 Bacteria 6461
72 Ga0268264_10107604 3300028381 Bacteria 2436
73 Ga0307511_10000218 3300030521 Bacteria 58158
74 Ga0307512_10011111 3300030522 Bacteria 8545
75 Ga0307513_10001201 3300031456 Bacteria 37661
76 Ga0307513_10003882 3300031456 Bacteria 20110
77 Ga0307513_10006374 3300031456 Bacteria 15427
78 Ga0316576_10004192 3300031727 Bacteria 8608
79 Ga0316576_10004920 3300031727 Bacteria 8085
80 Ga0307405_10000228 3300031731 Bacteria 20264
81 Ga0307406_10094904 3300031901 Bacteria 2017
82 Ga0307412_10007497 3300031911 Bacteria 6194
83 Ga0307412_10018537 3300031911 Bacteria 4191
84 Ga0307416_100021829 3300032002 Bacteria 4606
85 Ga0316574_0007650 3300035398 Bacteria 5936
86 Ga0373927_0048576 3300035695 Bacteria 2745
87 Ga0373925_0050499 3300037068 Bacteria 3102
88 Ga0395900_0014328 3300037418 Bacteria 8094
89 Ga0395900_0037702 3300037418 Bacteria 4983
90 Ga0395898_0081790 3300037466 Bacteria 3114
91 Ga0395901_0048195 3300038443 Bacteria 4424
92 Ga0400483_182915 3300039062 Bacteria 2307
93 Ga0466965_0005241 3300044683 Bacteria 5827
94 Ga0466963_0025314 3300044694 Bacteria 3784
95 Ga0466964_0120348 3300044706 Bacteria 1183
96 Ga0466970_0039677 3300044765 Bacteria 2499
97 Ga0466957_0103704 3300044842 Bacteria 1796
98 Ga0466960_0012965 3300044901 Bacteria 3531
99 Ga0466959_0118156 3300045049 Bacteria 1887
100 Ga0466959_0139981 3300045049 Bacteria 1711
101 Ga0466967_0001337 3300045976 Bacteria 14137
102 Ga0495672_0053710 3300047320 Bacteria 2359
103 Ga0496102_0123354 3300048905 Bacteria 2421
104 Ga0496103_0102566 3300048906 Bacteria 1812
105 Ga0496113_0257359 3300048916 Bacteria 1394
106 Ga0496114_0005286 3300048917 Bacteria 10086
107 Ga0496117_0013455 3300048920 Bacteria 7138
108 Ga0496118_0000263 3300048921 Bacteria 91976
109 Ga0496118_0006173 3300048921 Bacteria 13278
110 Ga0496120_0048776 3300048923 Bacteria 2435
111 Ga0501031_0060738 3300049568 Bacteria 2463
112 Ga0501034_0046781 3300049571 Bacteria 4371
113 Ga0501034_0303804 3300049571 Bacteria 1532
114 Ga0501034_0381051 3300049571 Bacteria 1335
115 Ga0501046_0042383 3300049580 Bacteria 3630
116 Ga0501080_0329941 3300049742 Bacteria 1380
117 Ga0501081_0238805 3300049743 Bacteria 1325
118 Ga0501035_0153506 3300049822 Bacteria 1997
119 Ga0501044_0311973 3300049823 Bacteria 1499
120 nmdc:mga05p37_19444_c1 3300050507 Bacteria 8216
121 nmdc:mga05p37_658101_c1 3300050507 Bacteria 1171
122 nmdc:mga0qj67_321454_c1 3300050509 Bacteria 1253
123 nmdc:mga06r32_1292_c1 3300050510 Bacteria 22554

MSA Aligner

Family Sequences

Sample Scaffold Protein Protein Length
1 3300050509 nmdc:mga0qj67_321454_c1 nmdc:mga0qj67_321454_c1_310_1185 291
2 3300049571 Ga0501034_0303804 Ga0501034_0303804_607_1506 293
3 iso_pu_bacteria 2675903060 2676490347 318
4 iso_pu_bacteria 2917736166 2917738001 320
5 3300047320 Ga0495672_0053710 Ga0495672_0053710_447_1478 322
6 iso_pu_bacteria 2558860280 2559432859 322
7 iso_pu_bacteria 2643221696 2644531259 322
8 iso_pu_bacteria 2811994874 2812330611 322
9 3300005617 Ga0068859_100011502 Ga0068859_1000115024 324
10 3300005844 Ga0068862_100067041 Ga0068862_1000670412 324
11 3300006931 Ga0097620_100011502 Ga0097620_1000115024 324
12 3300030521 Ga0307511_10000218 Ga0307511_1000021842 324
13 3300031727 Ga0316576_10004192 Ga0316576_100041925 324
14 3300035398 Ga0316574_0007650 Ga0316574_0007650_176_1156 324
15 iso_pu_bacteria 8054472261 8054475707 324
16 3300009094 Ga0111539_10151300 Ga0111539_101513001 325
17 3300013307 Ga0157372_10571011 Ga0157372_105710111 325
18 3300044706 Ga0466964_0120348 Ga0466964_0120348_46_1032 325
19 iso_pu_bacteria 2721755702 2723640567 325
20 3300025986 Ga0207658_10023260 Ga0207658_100232604 326
21 3300031456 Ga0307513_10003882 Ga0307513_1000388218 326
22 3300031727 Ga0316576_10004920 Ga0316576_100049207 326
23 3300037418 Ga0395900_0037702 Ga0395900_0037702_1663_2643 326
24 3300045049 Ga0466959_0118156 Ga0466959_0118156_531_1520 326
25 3300045976 Ga0466967_0001337 Ga0466967_0001337_10409_11398 326
26 3300048905 Ga0496102_0123354 Ga0496102_0123354_783_1835 326
27 iso_pu_bacteria 2508501039 2508678630 326
28 iso_pu_bacteria 2643221649 2644278122 326
29 iso_pu_bacteria 2773857921 2774844929 326
30 iso_pu_bacteria 8002775197 8002777464 326
31 3300005843 Ga0068860_100105461 Ga0068860_1001054612 327
32 3300025986 Ga0207658_10324520 Ga0207658_103245202 327
33 iso_pu_bacteria 2643221561 2643828170 327
34 3300006844 Ga0075428_100006383 Ga0075428_10000638313 328
35 3300006846 Ga0075430_100057199 Ga0075430_1000571994 328
36 3300006847 Ga0075431_100004727 Ga0075431_10000472713 328
37 3300009147 Ga0114129_10001023 Ga0114129_1000102338 328
38 3300031456 Ga0307513_10006374 Ga0307513_100063746 328
39 3300037466 Ga0395898_0081790 Ga0395898_0081790_1868_2854 328
40 3300044683 Ga0466965_0005241 Ga0466965_0005241_4049_5059 328
41 3300044765 Ga0466970_0039677 Ga0466970_0039677_642_1652 328
42 3300044842 Ga0466957_0103704 Ga0466957_0103704_230_1240 328
43 3300044901 Ga0466960_0012965 Ga0466960_0012965_769_1779 328
44 3300049571 Ga0501034_0381051 Ga0501034_0381051_209_1201 328
45 3300049822 Ga0501035_0153506 Ga0501035_0153506_770_1762 328
46 3300050507 nmdc:mga05p37_19444_c1 nmdc:mga05p37_19444_c1_5658_6647 328
47 3300009177 Ga0105248_10000063 Ga0105248_1000006370 329
48 3300025941 Ga0207711_10000219 Ga0207711_1000021930 329
49 3300031456 Ga0307513_10001201 Ga0307513_100012014 329
50 3300037418 Ga0395900_0014328 Ga0395900_0014328_1776_2783 329
51 3300048917 Ga0496114_0005286 Ga0496114_0005286_1659_2699 329
52 3300048920 Ga0496117_0013455 Ga0496117_0013455_3217_4296 329
53 3300048921 Ga0496118_0000263 Ga0496118_0000263_19171_20250 329
54 3300048921 Ga0496118_0006173 Ga0496118_0006173_6526_7569 329
55 3300048923 Ga0496120_0048776 Ga0496120_0048776_848_1927 329
56 3300050507 nmdc:mga05p37_658101_c1 nmdc:mga05p37_658101_c1_69_1088 329
57 iso_pu_bacteria 2558860112 2558913064 329
58 iso_pu_bacteria 2984576629 2984580474 329
59 iso_pu_bacteria 2990256926 2990258166 329
60 iso_pu_bacteria 8002784119 8002790113 329
61 3300005327 Ga0070658_10282477 Ga0070658_102824772 330
62 3300005338 Ga0068868_100110455 Ga0068868_1001104553 330
63 3300005341 Ga0070691_10068865 Ga0070691_100688652 330
64 3300005344 Ga0070661_100164873 Ga0070661_1001648732 330
65 3300005347 Ga0070668_100025533 Ga0070668_1000255333 330
66 3300005353 Ga0070669_100324606 Ga0070669_1003246061 330
67 3300005434 Ga0070709_10250822 Ga0070709_102508222 330
68 3300005455 Ga0070663_100038891 Ga0070663_1000388912 330
69 3300005456 Ga0070678_100302101 Ga0070678_1003021012 330
70 3300005457 Ga0070662_100068694 Ga0070662_1000686941 330
71 3300005466 Ga0070685_10045837 Ga0070685_100458372 330
72 3300005466 Ga0070685_10186882 Ga0070685_101868822 330
73 3300005535 Ga0070684_100203959 Ga0070684_1002039592 330
74 3300005564 Ga0070664_100229855 Ga0070664_1002298552 330
75 3300005577 Ga0068857_100072457 Ga0068857_1000724572 330
76 3300005578 Ga0068854_100026658 Ga0068854_1000266584 330
77 3300005616 Ga0068852_100050880 Ga0068852_1000508803 330
78 3300005617 Ga0068859_100104668 Ga0068859_1001046683 330
79 3300005617 Ga0068859_100308580 Ga0068859_1003085802 330
80 3300005618 Ga0068864_100223183 Ga0068864_1002231832 330
81 3300005843 Ga0068860_100049031 Ga0068860_1000490314 330
82 3300005844 Ga0068862_100015493 Ga0068862_1000154933 330
83 3300006028 Ga0070717_10169428 Ga0070717_101694282 330
84 3300006931 Ga0097620_100104668 Ga0097620_1001046682 330
85 3300006931 Ga0097620_100308571 Ga0097620_1003085712 330
86 3300009098 Ga0105245_10037165 Ga0105245_100371658 330
87 3300009176 Ga0105242_10442812 Ga0105242_104428121 330
88 3300013307 Ga0157372_10133589 Ga0157372_101335892 330
89 3300025901 Ga0207688_10016470 Ga0207688_100164701 330
90 3300025901 Ga0207688_10040868 Ga0207688_100408683 330
91 3300025907 Ga0207645_10009731 Ga0207645_100097316 330
92 3300025908 Ga0207643_10031252 Ga0207643_100312523 330
93 3300025909 Ga0207705_10253367 Ga0207705_102533672 330
94 3300025918 Ga0207662_10004325 Ga0207662_100043257 330
95 3300025919 Ga0207657_10083757 Ga0207657_100837572 330
96 3300025924 Ga0207694_10063623 Ga0207694_100636233 330
97 3300025925 Ga0207650_10126167 Ga0207650_101261672 330
98 3300025933 Ga0207706_10014448 Ga0207706_100144485 330
99 3300025937 Ga0207669_10148846 Ga0207669_101488462 330
100 3300025939 Ga0207665_10221126 Ga0207665_102211261 330
101 3300025942 Ga0207689_10015564 Ga0207689_100155646 330
102 3300025972 Ga0207668_10044366 Ga0207668_100443662 330
103 3300025981 Ga0207640_10083287 Ga0207640_100832872 330
104 3300026023 Ga0207677_10087945 Ga0207677_100879452 330
105 3300026023 Ga0207677_10118098 Ga0207677_101180982 330
106 3300026067 Ga0207678_10029583 Ga0207678_100295833 330
107 3300026088 Ga0207641_10096870 Ga0207641_100968703 330
108 3300026089 Ga0207648_10261017 Ga0207648_102610172 330
109 3300026116 Ga0207674_10333272 Ga0207674_103332721 330
110 3300026118 Ga0207675_100018621 Ga0207675_1000186212 330
111 3300026121 Ga0207683_10099884 Ga0207683_100998842 330
112 3300026121 Ga0207683_10161307 Ga0207683_101613073 330
113 3300028380 Ga0268265_10009815 Ga0268265_100098153 330
114 3300028381 Ga0268264_10107604 Ga0268264_101076043 330
115 3300030522 Ga0307512_10011111 Ga0307512_100111118 330
116 3300048906 Ga0496103_0102566 Ga0496103_0102566_480_1475 330
117 3300048916 Ga0496113_0257359 Ga0496113_0257359_230_1264 330
118 3300049742 Ga0501080_0329941 Ga0501080_0329941_148_1176 330
119 3300049743 Ga0501081_0238805 Ga0501081_0238805_109_1119 330
120 3300049823 Ga0501044_0311973 Ga0501044_0311973_257_1285 330
121 iso_pu_bacteria 2929212328 2929217847 330
122 3300006847 Ga0075431_100043404 Ga0075431_1000434044 332
123 3300035695 Ga0373927_0048576 Ga0373927_0048576_726_1727 332
124 3300037068 Ga0373925_0050499 Ga0373925_0050499_1763_2764 332
125 3300039062 Ga0400483_182915 Ga0400483_182915_1113_2114 332
126 3300044694 Ga0466963_0025314 Ga0466963_0025314_173_1183 332
127 3300045049 Ga0466959_0139981 Ga0466959_0139981_370_1380 332
128 3300050510 nmdc:mga06r32_1292_c1 nmdc:mga06r32_1292_c1_2134_3141 332
129 3300003320 rootH2_10146768 rootH2_101467682 333
130 3300013105 Ga0157369_10007924 Ga0157369_100079243 333
131 3300013307 Ga0157372_10017756 Ga0157372_100177567 333
132 3300031731 Ga0307405_10000228 Ga0307405_1000022810 333
133 3300031901 Ga0307406_10094904 Ga0307406_100949042 333
134 3300031911 Ga0307412_10007497 Ga0307412_100074976 333
135 3300031911 Ga0307412_10018537 Ga0307412_100185374 333
136 3300032002 Ga0307416_100021829 Ga0307416_1000218295 333
137 3300038443 Ga0395901_0048195 Ga0395901_0048195_161_1213 333
138 3300049568 Ga0501031_0060738 Ga0501031_0060738_1166_2176 333
139 3300049571 Ga0501034_0046781 Ga0501034_0046781_1071_2081 333
140 3300049580 Ga0501046_0042383 Ga0501046_0042383_1251_2261 333

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04909

Amidohydro_2

Amidohydrolase

17

340

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
4ofc-assembly1.cif.gz_A 2.0 angstroms x-ray crystal structure of human 2-amino-3-carboxymuconate-6-semialdehye decarboxylase 0.9628 7 333
4ign-assembly2.cif.gz_B 2.32 angstrom x-ray crystal structure of r47a mutant of human acmsd 0.9622 7 333
2hbx-assembly1.cif.gz_A crystal structure of alpha-amino-beta-carboxymuconate-epsilon-semialdehyde-decarboxylase (acmsd) 0.9619 6 331
6mgt-assembly1.cif.gz_B crystal structure of alpha-amino-beta-carboxymuconate-epsilon-semialdehyde decarboxylase mutant h110a 0.9595 6 333
4eri-assembly1.cif.gz_A evidence for a dual role of an active site histidine in alpha-amino-beta-carboxymuconate-epsilon-semialdehyde decarboxylase 0.9586 6 333
ID Description Score Start End Superfamily
4ofcD00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.9631 6 333 3.20.20.140
4eraA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.9505 6 332 3.20.20.140
4ofcD00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.9462 6 333 3.20.20.140
4eraA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.9338 6 332 3.20.20.140
4lalD00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.8496 6 333 3.20.20.140
ID Description Score Start End GO Terms
AF-A0A2K8LYI9-F1-model_v4 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase (EC 4.1.1.45) (Picolinate carboxylase) 0.9799 6 330 GO:0005829
GO:0016787
GO:0016831
GO:0019748
AF-A0A7K0LQQ1-F1-model_v4 Amidohydrolase family protein 0.9798 6 151 GO:0005737
GO:0016787
GO:0016831
GO:0019748
AF-A0A0M3D5F2-F1-model_v4 Aminocarboxymuconate-semialdehyde decarboxylase 0.9773 6 330 GO:0005737
GO:0016787
GO:0016831
GO:0019748
AF-A0A534DSR6-F1-model_v4 deleted 0.9734 6 225
AF-A0A6N7GK16-F1-model_v4 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase (EC 4.1.1.45) (Picolinate carboxylase) 0.9727 6 168 GO:0005829
GO:0016787
GO:0016831
GO:0019748

Feature Viewer

pLDDT pTM Quality
91.4 0.92 High
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Predicted Structure (AlphaFold2)

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Map