F178886

General Info

Members Datasets Scaffolds Average Seq Length
140 103 125 296

Family's Representative Sequence

Representative Sequence 3300005536|Ga0070697_100043099|Ga0070697_1000430994
Length 318
Sequence MTPRILLIGRNGQVGTDLTSLLPRLGEVVALDRQQLDLRKLNDIRRTVQELQPQWIVNAAAYTAVDDAEKDAAAARVINAEAPAVLAEEAVKIGAALIHYSTDYVFDGLKKLPYEEADAPNPINVYGKTKLDGERAIHGSGAAHLIFRTEWVYSTHGRNFLLTILRLATQRPELRIVADQIGSPTSSREIAAATVEVLSQLMNREDGFLSLATIGGIYHMSAEGETSWYEFAKSILDEASRSTLDLPWVVAATSGMPLLTQRVIPITTEEYPTPARRPAYSVLSTAHLYKSFGIRVPSWRKQLQSMFTPNALRDRLAL

Samples

Sample ID Description Type Environment
1 2162886012 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v1 Metagenome Rhizosphere
2 2515154189 Paraburkholderia nodosa DSM 21604 Isolate Unclassified
3 2524023250 Niveispirillum irakense DSM 11586 Isolate Unclassified
4 2562617112 Burkholderia sp. BT03 Isolate Rhizosphere
5 2599185239 Burkholderia sp. NFACC38-1 Isolate Rhizoplane
6 2643221594 Achromobacter sp. Root170 Isolate Unclassified
7 2711768613 Burkholderia sp. BT03 Isolate Rhizosphere
8 2808606395 Achromobacter sp. SLBN-14 Isolate Unclassified
9 2818991452 Burkholderia cepacia 561 Isolate Unclassified
10 2870068957 Burkholderia sp. JP2-270 Isolate Unclassified
11 2888366609 Serratia sp. NGAS9 Isolate Rhizosphere
12 2904615490 Paraburkholderia franconis CNPSo 3157 Isolate Unclassified
13 2928163908 Burkholderia sp. 567 Isolate Unclassified
14 2928170801 Burkholderia sp. 572 Isolate Unclassified
15 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
16 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
17 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
18 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
19 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
20 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
21 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
22 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
23 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
24 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
25 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
26 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
27 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
28 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
29 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
30 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
31 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
32 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
33 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
34 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
35 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
36 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
37 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
38 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
39 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
40 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
41 3300020076 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v3) (version 3) Metatranscriptome Rhizosphere
42 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
43 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
44 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
45 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
57 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
58 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
59 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
60 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
61 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
62 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
63 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
64 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
65 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
66 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
67 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
68 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
69 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
70 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
71 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
72 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
73 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
74 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
75 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
76 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
77 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
78 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
79 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
80 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
81 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
82 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
83 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
84 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
85 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
86 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
87 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
88 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
89 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
90 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
91 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
92 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
93 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
94 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
95 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
96 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
97 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
98 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
99 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
100 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
101 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
102 641736154 Burkholderia ambifaria IOP40-10 Isolate Rhizosphere
103 8021120328 Burkholderia sp. LS-044 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 88.57
Metatranscriptomes 0.71
Isolates 10.71

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.57
Nodule 0
Rhizoplane 5.71
Rhizosphere 65.71
Stem 0
Stem Tuber 0
Unclassified 25

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 MBSR1b_contig_11215141 2162886012 Bacteria 3868
2 MBSR1b_contig_5243123 2162886012 Bacteria 1903
3 rootH1_10039928 3300003316 Bacteria 3758
4 rootH1_10154570 3300003316 Bacteria 2237
5 rootL2_10019800 3300003322 Bacteria 4577
6 rootH1_10327707 3300003323 Bacteria 2335
7 Ga0055533_1000948 3300003756 Bacteria 8561
8 Ga0065715_10113700 3300005293 Unclassified 2478
9 Ga0070660_100000008 3300005339 Bacteria 155650
10 Ga0070659_100000087 3300005366 Bacteria 69724
11 Ga0070663_100000499 3300005455 Bacteria 20724
12 Ga0070699_100024837 3300005518 Bacteria 5165
13 Ga0070697_100043099 3300005536 Bacteria 3653
14 Ga0070665_100157095 3300005548 Bacteria 2276
15 Ga0068855_100005230 3300005563 Bacteria 15828
16 Ga0068856_100012300 3300005614 Bacteria 8287
17 Ga0068858_100223217 3300005842 Bacteria 1785
18 Ga0099794_10000963 3300007265 Bacteria 9707
19 Ga0105251_10000907 3300009011 Bacteria 26556
20 Ga0105251_10001502 3300009011 Bacteria 20029
21 Ga0105240_10415097 3300009093 Bacteria 1513
22 Ga0111539_10837743 3300009094 Unclassified 1070
23 Ga0105237_10015036 3300009545 Bacteria 8065
24 Ga0105237_10029401 3300009545 Bacteria 5586
25 Ga0105238_10020728 3300009551 Bacteria 6695
26 Ga0105239_10007270 3300010375 Bacteria 12721
27 Ga0105239_10073052 3300010375 Bacteria 3771
28 Ga0157373_10026202 3300013100 Bacteria 4214
29 Ga0157370_10117820 3300013104 Bacteria 2481
30 Ga0157369_10004954 3300013105 Bacteria 15599
31 Ga0157369_10011767 3300013105 Bacteria 9936
32 Ga0157369_10015052 3300013105 Bacteria 8730
33 Ga0157372_10194053 3300013307 Bacteria 2352
34 Ga0182005_1002413 3300015265 Bacteria 6688
35 Ga0206355_1333212 3300020076 Bacteria 1963
36 Ga0209566_100564 3300025225 Bacteria 24326
37 Ga0209674_100150 3300025226 Bacteria 96511
38 Ga0209674_100813 3300025226 Bacteria 10407
39 Ga0209759_1000747 3300025256 Bacteria 28226
40 Ga0207713_1000047 3300025735 Bacteria 229463
41 Ga0207713_1000132 3300025735 Bacteria 113216
42 Ga0207647_10001832 3300025904 Bacteria 16306
43 Ga0207647_10041727 3300025904 Bacteria 2883
44 Ga0207695_10008527 3300025913 Bacteria 12811
45 Ga0207671_10016619 3300025914 Bacteria 5714
46 Ga0207671_10083254 3300025914 Bacteria 2401
47 Ga0207657_10000018 3300025919 Bacteria 172140
48 Ga0207694_10007147 3300025924 Bacteria 8486
49 Ga0207690_10000006 3300025932 Bacteria 433880
50 Ga0207667_10003269 3300025949 Bacteria 20008
51 Ga0207678_10000110 3300026067 Bacteria 67527
52 Ga0207702_10015891 3300026078 Bacteria 6232
53 Ga0209588_1001042 3300027671 Bacteria 7134
54 Ga0265336_10007494 3300028666 Bacteria 3877
55 Ga0265313_10000194 3300031595 Bacteria 65054
56 Ga0373954_0009615 3300035118 Bacteria 4256
57 Ga0373937_0161190 3300036401 Bacteria 2103
58 Ga0395899_0000008 3300037312 Bacteria 567572
59 Ga0395899_0032212 3300037312 Bacteria 3938
60 Ga0395900_0000620 3300037418 Bacteria 47808
61 Ga0395900_0009086 3300037418 Bacteria 10185
62 Ga0395900_0099821 3300037418 Bacteria 2982
63 Ga0395900_0157775 3300037418 Bacteria 2317
64 Ga0395898_0000072 3300037466 Bacteria 249505
65 Ga0395898_0001014 3300037466 Bacteria 43796
66 Ga0395898_0004238 3300037466 Bacteria 15726
67 Ga0395905_0000396 3300037471 Bacteria 61743
68 Ga0395905_0009296 3300037471 Bacteria 9615
69 Ga0400483_026315 3300039062 Bacteria 26780
70 Ga0400483_070558 3300039062 Bacteria 3269
71 Ga0400483_167981 3300039062 Bacteria 1741
72 Ga0400483_251476 3300039062 Bacteria 2961
73 Ga0466969_0022852 3300044656 Bacteria 3225
74 Ga0466972_0000647 3300044658 Bacteria 16793
75 Ga0466972_0007393 3300044658 Bacteria 5519
76 Ga0466965_0000764 3300044683 Bacteria 12107
77 Ga0466966_0001588 3300044684 Bacteria 14607
78 Ga0466966_0032307 3300044684 Bacteria 3393
79 Ga0466966_0054440 3300044684 Bacteria 2536
80 Ga0466963_0047290 3300044694 Bacteria 2839
81 Ga0466970_0058767 3300044765 Bacteria 2058
82 Ga0466959_0000166 3300045049 Bacteria 43730
83 Ga0466959_0234645 3300045049 Bacteria 1269
84 Ga0466958_0000633 3300045836 Bacteria 15096
85 Ga0466958_0049510 3300045836 Bacteria 2542
86 Ga0466958_0336407 3300045836 Bacteria 971
87 Ga0495651_0000564 3300046462 Bacteria 28657
88 Ga0495653_0136346 3300046463 Bacteria 1731
89 Ga0495580_0000685 3300046472 Bacteria 28893
90 Ga0495580_0290630 3300046472 Bacteria 1114
91 Ga0495648_0019182 3300046524 Bacteria 4819
92 Ga0495609_0107043 3300046538 Bacteria 1208
93 Ga0495667_0000245 3300046559 Bacteria 35362
94 Ga0495661_0017506 3300046665 Bacteria 4731
95 Ga0495600_0061032 3300046809 Bacteria 2462
96 Ga0495674_0100032 3300047319 Bacteria 2468
97 Ga0495680_0000371 3300047322 Bacteria 50251
98 Ga0495673_0091799 3300047469 Bacteria 1240
99 Ga0495681_0030551 3300047470 Bacteria 2741
100 Ga0496100_0082828 3300048903 Bacteria 2170
101 Ga0496101_0069132 3300048904 Bacteria 2583
102 Ga0496101_0086580 3300048904 Bacteria 2324
103 Ga0496105_0128923 3300048908 Bacteria 2086
104 Ga0496112_0062528 3300048915 Bacteria 3672
105 Ga0496113_0309800 3300048916 Bacteria 1265
106 Ga0496115_0212736 3300048918 Unclassified 1597
107 Ga0496116_0003752 3300048919 Bacteria 14856
108 Ga0496116_0149887 3300048919 Bacteria 1298
109 Ga0496116_0158287 3300048919 Bacteria 1246
110 Ga0496117_0083648 3300048920 Bacteria 2085
111 Ga0496117_0149670 3300048920 Bacteria 1383
112 Ga0496118_0069396 3300048921 Bacteria 2552
113 Ga0496118_0074057 3300048921 Bacteria 2436
114 Ga0496119_0000468 3300048922 Bacteria 55018
115 Ga0496119_0003454 3300048922 Bacteria 16399
116 Ga0496120_0000137 3300048923 Bacteria 123518
117 Ga0496120_0002886 3300048923 Bacteria 16468
118 Ga0496121_0230167 3300048924 Bacteria 1299
119 Ga0496122_0198593 3300048925 Bacteria 1175
120 Ga0496124_0000017 3300048927 Bacteria 444389
121 Ga0496124_0009314 3300048927 Bacteria 10122
122 Ga0496126_0002472 3300048929 Bacteria 24884
123 Ga0496126_0004620 3300048929 Bacteria 16324
124 Ga0495682_0008780 3300049460 Bacteria 3974
125 Ga0500651_0165479 3300053093 Bacteria 1321

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048908 Ga0496105_0128923 Ga0496105_0128923_24_821 248
2 3300031595 Ga0265313_10000194 Ga0265313_1000019439 256
3 3300045836 Ga0466958_0336407 Ga0466958_0336407_156_947 257
4 3300044684 Ga0466966_0032307 Ga0466966_0032307_1853_2671 266
5 3300039062 Ga0400483_251476 Ga0400483_251476_282_1118 267
6 3300046472 Ga0495580_0290630 Ga0495580_0290630_224_1084 267
7 3300046538 Ga0495609_0107043 Ga0495609_0107043_33_917 270
8 3300046665 Ga0495661_0017506 Ga0495661_0017506_1351_2235 270
9 iso_pu_bacteria 2524023250 2524612579 270
10 iso_pu_bacteria 2888366609 2888368168 270
11 3300003316 rootH1_10039928 rootH1_100399283 271
12 3300003316 rootH1_10154570 rootH1_101545702 271
13 3300003756 Ga0055533_1000948 Ga0055533_10009484 271
14 3300005339 Ga0070660_100000008 Ga0070660_10000000869 271
15 3300005366 Ga0070659_100000087 Ga0070659_1000000876 271
16 3300005455 Ga0070663_100000499 Ga0070663_10000049914 271
17 3300005563 Ga0068855_100005230 Ga0068855_10000523013 271
18 3300005842 Ga0068858_100223217 Ga0068858_1002232171 271
19 3300009545 Ga0105237_10015036 Ga0105237_100150364 271
20 3300009551 Ga0105238_10020728 Ga0105238_100207284 271
21 3300010375 Ga0105239_10073052 Ga0105239_100730523 271
22 3300013100 Ga0157373_10026202 Ga0157373_100262022 271
23 3300013104 Ga0157370_10117820 Ga0157370_101178202 271
24 3300013105 Ga0157369_10004954 Ga0157369_1000495411 271
25 3300013105 Ga0157369_10011767 Ga0157369_100117672 271
26 3300015265 Ga0182005_1002413 Ga0182005_10024134 271
27 3300025225 Ga0209566_100564 Ga0209566_1005644 271
28 3300025226 Ga0209674_100150 Ga0209674_10015018 271
29 3300025226 Ga0209674_100813 Ga0209674_10081312 271
30 3300025904 Ga0207647_10001832 Ga0207647_1000183214 271
31 3300025904 Ga0207647_10041727 Ga0207647_100417272 271
32 3300025913 Ga0207695_10008527 Ga0207695_100085273 271
33 3300025914 Ga0207671_10016619 Ga0207671_100166195 271
34 3300025919 Ga0207657_10000018 Ga0207657_1000001817 271
35 3300025924 Ga0207694_10007147 Ga0207694_100071476 271
36 3300025932 Ga0207690_10000006 Ga0207690_1000000669 271
37 3300025949 Ga0207667_10003269 Ga0207667_1000326912 271
38 3300026067 Ga0207678_10000110 Ga0207678_1000011062 271
39 3300037312 Ga0395899_0032212 Ga0395899_0032212_1845_2729 271
40 3300037418 Ga0395900_0157775 Ga0395900_0157775_1344_2228 271
41 3300037471 Ga0395905_0000396 Ga0395905_0000396_14153_15010 271
42 3300045836 Ga0466958_0049510 Ga0466958_0049510_1649_2521 271
43 3300048904 Ga0496101_0086580 Ga0496101_0086580_873_1772 271
44 3300048915 Ga0496112_0062528 Ga0496112_0062528_1193_2092 271
45 3300048919 Ga0496116_0003752 Ga0496116_0003752_1781_2680 271
46 3300048919 Ga0496116_0149887 Ga0496116_0149887_159_1061 271
47 3300048919 Ga0496116_0158287 Ga0496116_0158287_52_954 271
48 3300048920 Ga0496117_0083648 Ga0496117_0083648_232_1131 271
49 3300048920 Ga0496117_0149670 Ga0496117_0149670_201_1100 271
50 3300048921 Ga0496118_0069396 Ga0496118_0069396_30_932 271
51 3300048925 Ga0496122_0198593 Ga0496122_0198593_113_1012 271
52 iso_pu_bacteria 2515154189 2516017124 271
53 iso_pu_bacteria 2599185239 2599739302 271
54 iso_pu_bacteria 2818991452 2819632685 271
55 iso_pu_bacteria 2870068957 2870072358 271
56 iso_pu_bacteria 2928163908 2928164222 271
57 iso_pu_bacteria 2928170801 2928173205 271
58 iso_pu_bacteria 641736154 642415791 271
59 iso_pu_bacteria 8021120328 8021122575 271
60 3300003322 rootL2_10019800 rootL2_100198004 272
61 3300009011 Ga0105251_10000907 Ga0105251_1000090717 272
62 3300009011 Ga0105251_10001502 Ga0105251_1000150213 272
63 3300009545 Ga0105237_10029401 Ga0105237_100294016 272
64 3300010375 Ga0105239_10007270 Ga0105239_100072709 272
65 3300013105 Ga0157369_10015052 Ga0157369_100150524 272
66 3300013307 Ga0157372_10194053 Ga0157372_101940532 272
67 3300020076 Ga0206355_1333212 Ga0206355_13332122 272
68 3300025735 Ga0207713_1000047 Ga0207713_100004711 272
69 3300025735 Ga0207713_1000132 Ga0207713_100013220 272
70 3300025914 Ga0207671_10083254 Ga0207671_100832542 272
71 3300039062 Ga0400483_026315 Ga0400483_026315_12703_13584 272
72 3300047470 Ga0495681_0030551 Ga0495681_0030551_714_1568 272
73 3300048927 Ga0496124_0009314 Ga0496124_0009314_5642_6496 272
74 3300005548 Ga0070665_100157095 Ga0070665_1001570953 273
75 3300048922 Ga0496119_0003454 Ga0496119_0003454_7334_8206 273
76 3300048923 Ga0496120_0002886 Ga0496120_0002886_7361_8233 273
77 3300048929 Ga0496126_0004620 Ga0496126_0004620_7269_8141 273
78 3300003323 rootH1_10327707 rootH1_103277072 274
79 3300005614 Ga0068856_100012300 Ga0068856_1000123007 274
80 3300009093 Ga0105240_10415097 Ga0105240_104150972 274
81 3300025256 Ga0209759_1000747 Ga0209759_10007473 274
82 3300026078 Ga0207702_10015891 Ga0207702_100158913 274
83 3300037312 Ga0395899_0000008 Ga0395899_0000008_137744_138658 274
84 3300037418 Ga0395900_0000620 Ga0395900_0000620_14333_15247 274
85 3300037418 Ga0395900_0009086 Ga0395900_0009086_7588_8433 274
86 3300037418 Ga0395900_0099821 Ga0395900_0099821_1205_2140 274
87 3300037466 Ga0395898_0000072 Ga0395898_0000072_180281_181195 274
88 3300037466 Ga0395898_0001014 Ga0395898_0001014_3900_4745 274
89 3300037466 Ga0395898_0004238 Ga0395898_0004238_6532_7467 274
90 3300044656 Ga0466969_0022852 Ga0466969_0022852_307_1218 274
91 3300045049 Ga0466959_0000166 Ga0466959_0000166_38966_39871 274
92 3300045836 Ga0466958_0000633 Ga0466958_0000633_12201_13106 274
93 3300046472 Ga0495580_0000685 Ga0495580_0000685_1852_2745 274
94 3300046524 Ga0495648_0019182 Ga0495648_0019182_1602_2495 274
95 3300047319 Ga0495674_0100032 Ga0495674_0100032_980_1873 274
96 3300047469 Ga0495673_0091799 Ga0495673_0091799_128_1021 274
97 3300048903 Ga0496100_0082828 Ga0496100_0082828_161_1054 274
98 3300048904 Ga0496101_0069132 Ga0496101_0069132_338_1231 274
99 3300048916 Ga0496113_0309800 Ga0496113_0309800_345_1238 274
100 3300048921 Ga0496118_0074057 Ga0496118_0074057_924_1817 274
101 3300048922 Ga0496119_0000468 Ga0496119_0000468_15379_16239 274
102 3300048923 Ga0496120_0000137 Ga0496120_0000137_93821_94681 274
103 3300048924 Ga0496121_0230167 Ga0496121_0230167_253_1146 274
104 3300048927 Ga0496124_0000017 Ga0496124_0000017_135740_136600 274
105 3300049460 Ga0495682_0008780 Ga0495682_0008780_1120_2013 274
106 iso_pu_bacteria 2562617112 2563062068 274
107 iso_pu_bacteria 2711768613 2713478093 274
108 iso_pu_bacteria 2904615490 2904620846 274
109 3300036401 Ga0373937_0161190 Ga0373937_0161190_582_1493 275
110 3300037471 Ga0395905_0009296 Ga0395905_0009296_1424_2293 275
111 3300048918 Ga0496115_0212736 Ga0496115_0212736_150_1061 275
112 3300048929 Ga0496126_0002472 Ga0496126_0002472_12001_12912 275
113 iso_pu_bacteria 2643221594 2643982909 275
114 iso_pu_bacteria 2808606395 2809033499 275
115 3300039062 Ga0400483_070558 Ga0400483_070558_2110_2982 276
116 3300039062 Ga0400483_167981 Ga0400483_167981_101_973 276
117 3300044684 Ga0466966_0054440 Ga0466966_0054440_726_1622 276
118 3300045049 Ga0466959_0234645 Ga0466959_0234645_243_1139 276
119 3300005536 Ga0070697_100043099 Ga0070697_1000430994 277
120 3300007265 Ga0099794_10000963 Ga0099794_100009632 277
121 3300027671 Ga0209588_1001042 Ga0209588_10010422 277
122 3300035118 Ga0373954_0009615 Ga0373954_0009615_1166_2035 277
123 3300044658 Ga0466972_0000647 Ga0466972_0000647_14116_15051 277
124 3300044658 Ga0466972_0007393 Ga0466972_0007393_3688_4638 277
125 3300044683 Ga0466965_0000764 Ga0466965_0000764_9435_10370 277
126 3300044684 Ga0466966_0001588 Ga0466966_0001588_7420_8355 277
127 3300044694 Ga0466963_0047290 Ga0466963_0047290_1760_2680 277
128 3300044765 Ga0466970_0058767 Ga0466970_0058767_484_1419 277
129 3300046462 Ga0495651_0000564 Ga0495651_0000564_2800_3747 277
130 3300046463 Ga0495653_0136346 Ga0495653_0136346_683_1630 277
131 3300046559 Ga0495667_0000245 Ga0495667_0000245_16124_17071 277
132 3300046809 Ga0495600_0061032 Ga0495600_0061032_1105_2052 277
133 3300047322 Ga0495680_0000371 Ga0495680_0000371_16506_17453 277
134 3300053093 Ga0500651_0165479 Ga0500651_0165479_102_1001 277
135 3300028666 Ga0265336_10007494 Ga0265336_100074944 278
136 2162886012 MBSR1b_contig_11215141 MBSR1b_0994.00004930 285
137 2162886012 MBSR1b_contig_5243123 MBSR1b_0524.00005280 285
138 3300005293 Ga0065715_10113700 Ga0065715_101137002 285
139 3300005518 Ga0070699_100024837 Ga0070699_1000248374 285
140 3300009094 Ga0111539_10837743 Ga0111539_108377431 285

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04321

RmlD_sub_bind

RmlD substrate binding domain

3

311

0.98

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

5

191

0.92

PF16363

GDP_Man_Dehyd

GDP-mannose 4,6 dehydratase

16

158

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
1vl0-assembly1.cif.gz_B crystal structure of a dtdp-4-dehydrorhamnose reductase, rfbd ortholog (ca_c2315) from clostridium acetobutylicum atcc 824 at 2.05 a resolution 0.9425 1 280
1vl0-assembly1.cif.gz_B crystal structure of a dtdp-4-dehydrorhamnose reductase, rfbd ortholog (ca_c2315) from clostridium acetobutylicum atcc 824 at 2.05 a resolution 0.9359 1 280
3sc6-assembly5.cif.gz_E 2.65 angstrom resolution crystal structure of dtdp-4-dehydrorhamnose reductase (rfbd) from bacillus anthracis str. ames in complex with nadp 0.9354 2 278
8ctr-assembly4.cif.gz_D crystal structure of dtdp-4-dehydrorhamnose reductase from klebsiella pneumoniae with bound nadp 0.9353 1 278
3sc6-assembly2.cif.gz_B 2.65 angstrom resolution crystal structure of dtdp-4-dehydrorhamnose reductase (rfbd) from bacillus anthracis str. ames in complex with nadp 0.9329 2 278
ID Description Score Start End Superfamily
1vl0B01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.943 3 213 3.40.50.720
3sc6D01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9335 2 213 3.40.50.720
1vl0C02 Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1;UDP-galactose 4-epimerase, domain 1 0.913 166 279 3.90.25.10
1kc0A00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9059 1 284 3.40.50.720
3sc6B02 Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1;UDP-galactose 4-epimerase, domain 1 0.9046 164 278 3.90.25.10
ID Description Score Start End GO Terms
AF-A0A6J4JT85-F1-model_v4 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) 0.9737 1 282 GO:0005829
GO:0008831
GO:0019305
GO:0045226
AF-A0A0G1W9Q8-F1-model_v4 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) 0.9697 1 277 GO:0005829
GO:0008831
GO:0019305
GO:0045226
AF-A0A350AKU0-F1-model_v4 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) 0.9664 1 283 GO:0005829
GO:0008831
GO:0019305
GO:0045226
AF-A0A0Q6KPW6-F1-model_v4 deleted 0.9653 1 278
AF-A0A7V3JLA6-F1-model_v4 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) 0.9647 3 150 GO:0016491
GO:0019305

Feature Viewer

pLDDT pTM Quality
95.26 0.92 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map