F178609

General Info

Members Datasets Scaffolds Average Seq Length
140 92 138 289

Family's Representative Sequence

Representative Sequence 3300005354|Ga0070675_100363266|Ga0070675_1003632661
Length 329
Sequence MDACLNFPEQLCFNWQGLNTSFLLHKKHNLSGSTWRSCFMKTGFVNIFGRPNAGKSTLLNALMGEKLAIVSPKVQTTRHRIKAIMTEKDYQVIFSDTPGIIEPKYKLHEKMMQAVKGALEDADLALLIVDVNENWEECNSIFEALKLNVPAVVVINKIDRASQEKIKEAIAFFETKTYCKKTLTISATSGINLKGFLKPILELLPEGEPFYNTEGGDISDLPTKFFVSELIREKIYQLAQDEIPYHATVLVREFKEKTTLVKIVADIIVHRETQKVILIGEKGSMIKKLGTLARADIEAFLQQKVFLELFVKVKPKWRENDLQLKEYGY

Samples

Sample ID Description Type Environment
1 2881955468 Edaphocola flava HME-24 Isolate Rhizosphere
2 2929154850 Filimonas sp. R-72421 Hybrid assembly Isolate Unclassified
3 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
4 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
5 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
6 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
7 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
8 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
9 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
10 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
11 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
12 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
13 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
14 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
15 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
16 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
17 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
18 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
19 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
20 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
21 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
22 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
23 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
24 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
25 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
26 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
27 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
28 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
29 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
30 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
31 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
32 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
33 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
34 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
35 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
36 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
37 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
38 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
39 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
40 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
65 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
66 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
67 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
68 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
69 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
70 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
71 3300042131 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0225D_E14_070716_130 Metagenome Rhizosphere
72 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
73 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
74 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
75 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
76 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
77 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
78 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
79 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
80 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
82 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
83 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
84 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
85 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
86 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
87 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
88 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
89 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
90 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
91 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
92 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.57
Metatranscriptomes 0
Isolates 1.43

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.86
Nodule 0
Rhizoplane 0
Rhizosphere 84.29
Stem 0
Stem Tuber 0
Unclassified 7.86

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10045980 3300003203 Bacteria 1499
2 rootH1_10032584 3300003316 Bacteria 3373
3 rootL2_10084845 3300003322 Bacteria 1505
4 rootL2_10270362 3300003322 Bacteria 1090
5 rootL2_10300788 3300003322 Bacteria 2449
6 rootH1_10076476 3300003323 Bacteria 7509
7 rootH1_10272339 3300003323 Bacteria 5021
8 Ga0065707_10241752 3300005295 Bacteria 1150
9 Ga0070658_10137609 3300005327 Bacteria 2039
10 Ga0070666_10236932 3300005335 Bacteria 1290
11 Ga0068868_100012441 3300005338 Bacteria 6221
12 Ga0068868_100036928 3300005338 Bacteria 3785
13 Ga0070660_100012732 3300005339 Bacteria 6013
14 Ga0070668_100160739 3300005347 Bacteria 1823
15 Ga0070675_100154468 3300005354 Bacteria 1970
16 Ga0070675_100363266 3300005354 Bacteria 1286
17 Ga0070671_100591955 3300005355 Bacteria 958
18 Ga0068867_100050311 3300005459 Bacteria 3070
19 Ga0068867_100060103 3300005459 Bacteria 2818
20 Ga0070685_10126520 3300005466 Bacteria 1593
21 Ga0070679_100001669 3300005530 Bacteria 20001
22 Ga0068853_100169069 3300005539 Unclassified 1977
23 Ga0068853_100406757 3300005539 Bacteria 1275
24 Ga0068855_100256765 3300005563 Bacteria 1948
25 Ga0068855_100287986 3300005563 Bacteria 1822
26 Ga0068857_100006320 3300005577 Bacteria 10143
27 Ga0068854_100072235 3300005578 Bacteria 2526
28 Ga0068854_100142022 3300005578 Bacteria 1844
29 Ga0068854_100510493 3300005578 Bacteria 1014
30 Ga0068852_100012798 3300005616 Bacteria 6392
31 Ga0068852_100034781 3300005616 Bacteria 4196
32 Ga0068852_100317232 3300005616 Bacteria 1513
33 Ga0068866_10020482 3300005718 Bacteria 3032
34 Ga0068861_100292762 3300005719 Bacteria 1406
35 Ga0068860_100007206 3300005843 Bacteria 11119
36 Ga0068860_100276968 3300005843 Bacteria 1639
37 Ga0075366_10034977 3300006195 Bacteria 2961
38 Ga0105240_10000716 3300009093 Bacteria 60717
39 Ga0105240_10010052 3300009093 Bacteria 13325
40 Ga0105240_10017440 3300009093 Bacteria 9675
41 Ga0105240_10133036 3300009093 Bacteria 2981
42 Ga0105241_10018417 3300009174 Bacteria 5137
43 Ga0105241_10171746 3300009174 Bacteria 1791
44 Ga0105241_10322194 3300009174 Bacteria 1333
45 Ga0105237_10002234 3300009545 Bacteria 24181
46 Ga0105237_10014087 3300009545 Bacteria 8364
47 Ga0105237_10154684 3300009545 Bacteria 2290
48 Ga0105238_10003024 3300009551 Bacteria 16777
49 Ga0105238_10040289 3300009551 Bacteria 4734
50 Ga0105239_10051531 3300010375 Bacteria 4512
51 Ga0157370_10003298 3300013104 Bacteria 19028
52 Ga0157369_10720119 3300013105 Unclassified 1027
53 Ga0157374_10320594 3300013296 Bacteria 1536
54 Ga0163162_10057786 3300013306 Bacteria 3907
55 Ga0157372_10090096 3300013307 Unclassified 3486
56 Ga0157372_10094979 3300013307 Bacteria 3396
57 Ga0157372_10527123 3300013307 Bacteria 1377
58 Ga0157372_10629982 3300013307 Bacteria 1249
59 Ga0157375_10045976 3300013308 Bacteria 4252
60 Ga0157377_10036672 3300014745 Bacteria 2698
61 Ga0163161_10034643 3300017792 Bacteria 3612
62 Ga0163161_10116739 3300017792 Bacteria 2001
63 Ga0163161_10124353 3300017792 Bacteria 1941
64 Ga0207697_10155347 3300025315 Unclassified 997
65 Ga0207647_10115581 3300025904 Bacteria 1584
66 Ga0207645_10015206 3300025907 Bacteria 5123
67 Ga0207654_10019210 3300025911 Bacteria 3603
68 Ga0207695_10006540 3300025913 Bacteria 15089
69 Ga0207671_10004117 3300025914 Bacteria 14060
70 Ga0207671_10015919 3300025914 Bacteria 5864
71 Ga0207671_10026149 3300025914 Bacteria 4377
72 Ga0207657_10016353 3300025919 Bacteria 7157
73 Ga0207652_10005530 3300025921 Bacteria 10245
74 Ga0207694_10007838 3300025924 Bacteria 8087
75 Ga0207694_10103592 3300025924 Unclassified 2257
76 Ga0207694_10393428 3300025924 Bacteria 1152
77 Ga0207706_10028014 3300025933 Bacteria 5033
78 Ga0207691_10170322 3300025940 Bacteria 1907
79 Ga0207689_10028929 3300025942 Bacteria 4632
80 Ga0207689_10041091 3300025942 Bacteria 3827
81 Ga0207667_10000915 3300025949 Bacteria 37602
82 Ga0207651_10381359 3300025960 Bacteria 1195
83 Ga0207640_10072470 3300025981 Bacteria 2324
84 Ga0207640_10262686 3300025981 Unclassified 1346
85 Ga0207640_10380582 3300025981 Bacteria 1143
86 Ga0207658_10059280 3300025986 Bacteria 2852
87 Ga0207677_10036314 3300026023 Bacteria 3211
88 Ga0207639_10038306 3300026041 Bacteria 3566
89 Ga0207639_10101994 3300026041 Bacteria 2322
90 Ga0207639_10507660 3300026041 Bacteria 1102
91 Ga0207648_10021132 3300026089 Bacteria 5852
92 Ga0207648_10263619 3300026089 Bacteria 1538
93 Ga0207674_10006306 3300026116 Bacteria 13976
94 Ga0207675_100123736 3300026118 Bacteria 2449
95 Ga0207675_100316040 3300026118 Bacteria 1524
96 Ga0207698_10070725 3300026142 Bacteria 2766
97 Ga0207698_10085614 3300026142 Bacteria 2560
98 Ga0207698_10142145 3300026142 Bacteria 2070
99 Ga0268266_10000024 3300028379 Bacteria 490820
100 Ga0268264_10004395 3300028381 Bacteria 12025
101 Ga0268264_10211317 3300028381 Bacteria 1781
102 Ga0265338_10191349 3300028800 Bacteria 1551
103 Ga0307511_10003655 3300030521 Bacteria 15744
104 Ga0265327_10000577 3300031251 Bacteria 62128
105 Ga0307516_10008404 3300031730 Bacteria 11700
106 Ga0373943_0154838 3300035170 Bacteria 1244
107 Ga0436365_1749951 3300039437 Unclassified 1146
108 Ga0436365_1855755 3300039437 Bacteria 1905
109 Ga0439457_016096 3300042014 Bacteria 1668
110 Ga0450894_003465 3300042131 Bacteria 2063
111 Ga0451577_0010764 3300042876 Bacteria 8704
112 Ga0451577_0119419 3300042876 Bacteria 2361
113 Ga0466972_0001406 3300044658 Bacteria 11668
114 Ga0466972_0032702 3300044658 Bacteria 2554
115 Ga0453684_0004218 3300044712 Bacteria 30864
116 Ga0466959_0000002 3300045049 Bacteria 362671
117 Ga0495638_0131370 3300046460 Bacteria 1470
118 Ga0495668_0000829 3300046616 Bacteria 35161
119 Ga0495672_0021840 3300047320 Bacteria 4169
120 Ga0495672_0055524 3300047320 Bacteria 2311
121 Ga0495686_0000277 3300047472 Bacteria 90929
122 Ga0495686_0006296 3300047472 Bacteria 9125
123 Ga0495686_0168990 3300047472 Unclassified 1273
124 Ga0501032_0159476 3300049569 Bacteria 1481
125 Ga0501043_0112583 3300049579 Bacteria 2137
126 Ga0501070_0114512 3300049586 Unclassified 2228
127 Ga0501083_0069243 3300049744 Bacteria 2348
128 Ga0501269_002430 3300049766 Bacteria 2297
129 nmdc:mga0k408_242199_c1 3300050493 Bacteria 1077
130 nmdc:mga0k408_29330_c1 3300050493 Bacteria 3131
131 Ga0500646_0001132 3300053090 Bacteria 7206
132 Ga0500562_000029 3300053108 Bacteria 94705
133 Ga0500642_0003512 3300053130 Bacteria 4752
134 Ga0500616_0002420 3300053153 Bacteria 15547
135 Ga0500616_0031068 3300053153 Bacteria 2928
136 Ga0500622_0000304 3300053156 Bacteria 50299
137 Ga0500627_0026141 3300053158 Bacteria 2406
138 Ga0500661_005170 3300055283 Bacteria 2443

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300025986 Ga0207658_10059280 Ga0207658_100592803 240
2 3300013307 Ga0157372_10629982 Ga0157372_106299821 257
3 3300005338 Ga0068868_100012441 Ga0068868_1000124414 264
4 3300025907 Ga0207645_10015206 Ga0207645_100152065 264
5 3300025933 Ga0207706_10028014 Ga0207706_100280142 264
6 3300025940 Ga0207691_10170322 Ga0207691_101703222 264
7 3300026089 Ga0207648_10263619 Ga0207648_102636192 264
8 3300047472 Ga0495686_0168990 Ga0495686_0168990_16_816 265
9 3300005335 Ga0070666_10236932 Ga0070666_102369321 274
10 3300005327 Ga0070658_10137609 Ga0070658_101376091 275
11 3300013307 Ga0157372_10094979 Ga0157372_100949794 279
12 3300042014 Ga0439457_016096 Ga0439457_016096_39_929 279
13 3300005578 Ga0068854_100510493 Ga0068854_1005104931 281
14 3300039437 Ga0436365_1855755 Ga0436365_1855755_38_913 284
15 iso_pu_bacteria 2929154850 2929157645 285
16 3300005459 Ga0068867_100050311 Ga0068867_1000503112 287
17 3300005578 Ga0068854_100072235 Ga0068854_1000722352 287
18 3300005616 Ga0068852_100317232 Ga0068852_1003172322 287
19 3300013296 Ga0157374_10320594 Ga0157374_103205942 287
20 3300013306 Ga0163162_10057786 Ga0163162_100577862 287
21 3300013308 Ga0157375_10045976 Ga0157375_100459764 287
22 3300014745 Ga0157377_10036672 Ga0157377_100366723 287
23 3300025315 Ga0207697_10155347 Ga0207697_101553472 287
24 3300025942 Ga0207689_10041091 Ga0207689_100410913 287
25 3300025981 Ga0207640_10380582 Ga0207640_103805821 287
26 3300026041 Ga0207639_10507660 Ga0207639_105076602 287
27 3300026118 Ga0207675_100316040 Ga0207675_1003160401 287
28 3300026142 Ga0207698_10142145 Ga0207698_101421453 287
29 3300003316 rootH1_10032584 rootH1_100325842 288
30 3300003322 rootL2_10270362 rootL2_102703621 288
31 3300005338 Ga0068868_100036928 Ga0068868_1000369286 288
32 3300005339 Ga0070660_100012732 Ga0070660_1000127325 288
33 3300005347 Ga0070668_100160739 Ga0070668_1001607392 288
34 3300005354 Ga0070675_100154468 Ga0070675_1001544682 288
35 3300005355 Ga0070671_100591955 Ga0070671_1005919551 288
36 3300005459 Ga0068867_100060103 Ga0068867_1000601032 288
37 3300005466 Ga0070685_10126520 Ga0070685_101265203 288
38 3300005530 Ga0070679_100001669 Ga0070679_1000016697 288
39 3300005539 Ga0068853_100169069 Ga0068853_1001690692 288
40 3300005539 Ga0068853_100406757 Ga0068853_1004067572 288
41 3300005563 Ga0068855_100256765 Ga0068855_1002567651 288
42 3300005563 Ga0068855_100287986 Ga0068855_1002879862 288
43 3300005577 Ga0068857_100006320 Ga0068857_1000063203 288
44 3300005616 Ga0068852_100012798 Ga0068852_1000127986 288
45 3300005616 Ga0068852_100034781 Ga0068852_1000347815 288
46 3300005718 Ga0068866_10020482 Ga0068866_100204821 288
47 3300005719 Ga0068861_100292762 Ga0068861_1002927622 288
48 3300005843 Ga0068860_100007206 Ga0068860_1000072062 288
49 3300005843 Ga0068860_100276968 Ga0068860_1002769683 288
50 3300006195 Ga0075366_10034977 Ga0075366_100349773 288
51 3300009093 Ga0105240_10000716 Ga0105240_1000071656 288
52 3300009093 Ga0105240_10010052 Ga0105240_1001005217 288
53 3300009093 Ga0105240_10133036 Ga0105240_101330365 288
54 3300009174 Ga0105241_10018417 Ga0105241_100184173 288
55 3300009174 Ga0105241_10171746 Ga0105241_101717463 288
56 3300009174 Ga0105241_10322194 Ga0105241_103221942 288
57 3300009545 Ga0105237_10002234 Ga0105237_1000223422 288
58 3300009545 Ga0105237_10014087 Ga0105237_100140875 288
59 3300009545 Ga0105237_10154684 Ga0105237_101546843 288
60 3300009551 Ga0105238_10003024 Ga0105238_100030244 288
61 3300009551 Ga0105238_10040289 Ga0105238_100402892 288
62 3300010375 Ga0105239_10051531 Ga0105239_100515312 288
63 3300013104 Ga0157370_10003298 Ga0157370_1000329814 288
64 3300013105 Ga0157369_10720119 Ga0157369_107201191 288
65 3300013307 Ga0157372_10090096 Ga0157372_100900963 288
66 3300013307 Ga0157372_10527123 Ga0157372_105271232 288
67 3300017792 Ga0163161_10124353 Ga0163161_101243532 288
68 3300025904 Ga0207647_10115581 Ga0207647_101155812 288
69 3300025911 Ga0207654_10019210 Ga0207654_100192103 288
70 3300025913 Ga0207695_10006540 Ga0207695_100065409 288
71 3300025914 Ga0207671_10004117 Ga0207671_100041179 288
72 3300025914 Ga0207671_10015919 Ga0207671_100159193 288
73 3300025914 Ga0207671_10026149 Ga0207671_100261493 288
74 3300025919 Ga0207657_10016353 Ga0207657_100163532 288
75 3300025921 Ga0207652_10005530 Ga0207652_100055302 288
76 3300025924 Ga0207694_10007838 Ga0207694_100078381 288
77 3300025924 Ga0207694_10103592 Ga0207694_101035922 288
78 3300025942 Ga0207689_10028929 Ga0207689_100289294 288
79 3300025949 Ga0207667_10000915 Ga0207667_1000091534 288
80 3300025981 Ga0207640_10262686 Ga0207640_102626862 288
81 3300026041 Ga0207639_10038306 Ga0207639_100383063 288
82 3300026041 Ga0207639_10101994 Ga0207639_101019942 288
83 3300026089 Ga0207648_10021132 Ga0207648_100211324 288
84 3300026116 Ga0207674_10006306 Ga0207674_100063069 288
85 3300026118 Ga0207675_100123736 Ga0207675_1001237362 288
86 3300026142 Ga0207698_10070725 Ga0207698_100707253 288
87 3300026142 Ga0207698_10085614 Ga0207698_100856142 288
88 3300028379 Ga0268266_10000024 Ga0268266_10000024160 288
89 3300028381 Ga0268264_10004395 Ga0268264_100043954 288
90 3300028381 Ga0268264_10211317 Ga0268264_102113172 288
91 3300030521 Ga0307511_10003655 Ga0307511_100036557 288
92 3300031730 Ga0307516_10008404 Ga0307516_100084047 288
93 3300035170 Ga0373943_0154838 Ga0373943_0154838_252_1118 288
94 3300039437 Ga0436365_1749951 Ga0436365_1749951_142_1008 288
95 3300042876 Ga0451577_0010764 Ga0451577_0010764_651_1520 288
96 3300046460 Ga0495638_0131370 Ga0495638_0131370_426_1295 288
97 3300047320 Ga0495672_0055524 Ga0495672_0055524_385_1251 288
98 3300047472 Ga0495686_0006296 Ga0495686_0006296_1481_2350 288
99 3300049569 Ga0501032_0159476 Ga0501032_0159476_362_1231 288
100 3300049579 Ga0501043_0112583 Ga0501043_0112583_976_1845 288
101 3300049586 Ga0501070_0114512 Ga0501070_0114512_215_1081 288
102 3300050493 nmdc:mga0k408_29330_c1 nmdc:mga0k408_29330_c1_1140_2012 288
103 3300053090 Ga0500646_0001132 Ga0500646_0001132_6189_7058 288
104 iso_pu_bacteria 2881955468 2881957853 288
105 3300003322 rootL2_10084845 rootL2_100848452 289
106 3300005578 Ga0068854_100142022 Ga0068854_1001420222 289
107 3300025981 Ga0207640_10072470 Ga0207640_100724702 289
108 3300042876 Ga0451577_0119419 Ga0451577_0119419_367_1242 289
109 3300050493 nmdc:mga0k408_242199_c1 nmdc:mga0k408_242199_c1_103_990 289
110 3300053108 Ga0500562_000029 Ga0500562_000029_73618_74490 289
111 3300053153 Ga0500616_0031068 Ga0500616_0031068_127_999 289
112 3300053156 Ga0500622_0000304 Ga0500622_0000304_3510_4382 289
113 3300055283 Ga0500661_005170 Ga0500661_005170_345_1217 289
114 3300044712 Ga0453684_0004218 Ga0453684_0004218_12720_13613 290
115 3300009093 Ga0105240_10017440 Ga0105240_100174405 291
116 3300025924 Ga0207694_10393428 Ga0207694_103934281 291
117 3300026023 Ga0207677_10036314 Ga0207677_100363141 291
118 3300003322 rootL2_10300788 rootL2_103007884 292
119 3300003323 rootH1_10076476 rootH1_100764762 292
120 3300003323 rootH1_10272339 rootH1_102723395 292
121 3300031251 Ga0265327_10000577 Ga0265327_1000057742 292
122 3300046616 Ga0495668_0000829 Ga0495668_0000829_20760_21641 292
123 3300047472 Ga0495686_0000277 Ga0495686_0000277_6663_7544 292
124 3300049766 Ga0501269_002430 Ga0501269_002430_1230_2111 292
125 3300053130 Ga0500642_0003512 Ga0500642_0003512_3641_4522 292
126 3300053153 Ga0500616_0002420 Ga0500616_0002420_12996_13877 292
127 3300053158 Ga0500627_0026141 Ga0500627_0026141_315_1196 292
128 3300017792 Ga0163161_10034643 Ga0163161_100346434 293
129 3300025960 Ga0207651_10381359 Ga0207651_103813591 293
130 3300005295 Ga0065707_10241752 Ga0065707_102417522 294
131 3300042131 Ga0450894_003465 Ga0450894_003465_1084_1989 294
132 3300044658 Ga0466972_0032702 Ga0466972_0032702_155_1084 294
133 3300045049 Ga0466959_0000002 Ga0466959_0000002_326436_327365 294
134 3300047320 Ga0495672_0021840 Ga0495672_0021840_1543_2454 294
135 3300017792 Ga0163161_10116739 Ga0163161_101167392 295
136 3300028800 Ga0265338_10191349 Ga0265338_101913492 295
137 3300049744 Ga0501083_0069243 Ga0501083_0069243_1383_2279 296
138 3300005354 Ga0070675_100363266 Ga0070675_1003632661 297
139 3300044658 Ga0466972_0001406 Ga0466972_0001406_3136_4239 297
140 3300003203 JGI25406J46586_10045980 JGI25406J46586_100459801 298

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07650

KH_2

KH domain

242

318

0.97

PF01926

MMR_HSR1

50S ribosome-binding GTPase

44

157

0.85

PF02421

FeoB_N

Ferrous iron transport protein B

44

200

0.8

PF10662

PduV-EutP

Ethanolamine utilisation - propanediol utilisation

42

202

0.79

PF00009

GTP_EFTU

Elongation factor Tu GTP binding domain

41

206

0.75

Structural Annotation

Top 5 Hits

ID Description Score Start End
2wji-assembly2.cif.gz_B structure and function of the feob g-domain from methanococcus jannaschii 0.8011 10 171
3pqc-assembly1.cif.gz_A crystal structure of thermotoga maritima ribosome biogenesis gtp-binding protein engb (ysxc/yiha) in complex with gdp 0.7788 9 174
4jn6-assembly1.cif.gz_A crystal structure of the aldolase-dehydrogenase complex from mycobacterium tuberculosis hrv37 0.7725 83 153
2dyk-assembly2.cif.gz_B crystal structure of n-terminal gtp-binding domain of enga from thermus thermophilus hb8 0.7715 14 176
2wji-assembly2.cif.gz_B structure and function of the feob g-domain from methanococcus jannaschii 0.7691 10 171
ID Description Score Start End Superfamily
af_Q9CZU4_341_437_3.30.300.20 Alpha Beta;2-Layer Sandwich;GMP Synthetase; Chain A, domain 3;K homology (KH) domain 0.9366 196 284 3.30.300.20
af_Q9VG07_272_372_3.30.300.20 Alpha Beta;2-Layer Sandwich;GMP Synthetase; Chain A, domain 3;K homology (KH) domain 0.917 188 285 3.30.300.20
af_K7TQ02_337_437_3.30.300.20 Alpha Beta;2-Layer Sandwich;GMP Synthetase; Chain A, domain 3;K homology (KH) domain 0.9135 193 285 3.30.300.20
af_Q9VG07_272_372_3.30.300.20 Alpha Beta;2-Layer Sandwich;GMP Synthetase; Chain A, domain 3;K homology (KH) domain 0.8823 188 285 3.30.300.20
af_Q09523_292_394_3.30.300.20 Alpha Beta;2-Layer Sandwich;GMP Synthetase; Chain A, domain 3;K homology (KH) domain 0.8804 178 285 3.30.300.20
ID Description Score Start End GO Terms
AF-A0A3S4HYT4-F1-model_v4 GTP-binding protein Era 0.9482 196 287 GO:0000028
GO:0005525
GO:0005829
GO:0019843
GO:0043024
AF-A0A2E9A2H5-F1-model_v4 KH type-2 domain-containing protein 0.9125 210 283 GO:0000028
GO:0005525
GO:0019843
GO:0043024
AF-A0A0N4X5V2-F1-model_v4 KH domain-containing protein 0.9017 198 285 GO:0000028
GO:0005525
GO:0005759
GO:0019843
GO:0043024
AF-A0A3D0PC16-F1-model_v4 GTPase Era 0.895 9 167 GO:0000028
GO:0005525
GO:0005829
GO:0019843
GO:0043024
AF-A0A6I2WVF1-F1-model_v4 GTPase Era 0.8799 10 170 GO:0000028
GO:0005525
GO:0005829
GO:0019843
GO:0043024

Feature Viewer

pLDDT pTM Quality
76.27 0.56 Medium
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Predicted Structure (AlphaFold2)

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