F178177

General Info

Members Datasets Scaffolds Average Seq Length
140 111 129 297

Family's Representative Sequence

Representative Sequence 3300003322|rootL2_10016923|rootL2_100169234
Length 331
Sequence MAIYPKAKPVLAKTKVDLDKLLCLACANFVSKKIMKIFVTGATGFVGTALVQELIKANHQVLGLARSVASAEKLKAAGAGVQLGDLEDLDSLRQGAAAADAVIHAGFVHDFSRFAEVCQIDKVAIETIGSTLAGSNRPFIVTSGTALVNPGTMATEDMPITYDTTRFPRVSEPSLDAFTPQGVRTGIIRLAPSVHGEGDLHGFIPTLVNIARQKGVVAYIGDGQNRWNAVHRLDAVRLFRLALEKGETGMKYHAVGDEGMTLKTISEVIGRHLNLPVVSIAPEEAAEHFGWFAMMASLDCPASSQLTQKRLNWKPVHPTLSGDLASGIYFK

Samples

Sample ID Description Type Environment
1 2711768088 Sporolactobacillus terrae DSM 11697 Isolate Rhizosphere
2 2842903701 Olivibacter sp. R-72191 Isolate Unclassified
3 2857472729 Cohnella sp. R-74144 Isolate Unclassified
4 2862178590 Streptomyces sp. SDr-06 Isolate Rhizosphere
5 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
6 2919073203 Tardiphaga robiniae 1155 Isolate Unclassified
7 2919425241 Bacillus sp. 3255 Isolate Rhizosphere
8 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
9 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
10 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
11 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere
12 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
13 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
14 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
15 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
16 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
17 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
18 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
19 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
20 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
21 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
22 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
23 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
24 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
25 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
26 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
27 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
28 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
29 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
30 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
31 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
32 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
33 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
34 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
35 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
36 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
37 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
38 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
39 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
40 3300024225 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU5 Metagenome Rhizosphere
41 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
42 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
43 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
44 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
45 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
46 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
47 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
48 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
49 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
50 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
60 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
61 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
62 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
63 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
64 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
65 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
66 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
67 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
68 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
69 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
70 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
71 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
72 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
73 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
74 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
75 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
76 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
77 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
78 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
79 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
80 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
81 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
82 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
83 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
84 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
85 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
86 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
87 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
88 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
89 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
90 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
91 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
92 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
93 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
94 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
95 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
96 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
97 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
98 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
100 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
101 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
102 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
103 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
104 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
105 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
106 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
107 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
108 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
109 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
110 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
111 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 91.43
Metatranscriptomes 0
Isolates 8.57

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 19.29
Nodule 0
Rhizoplane 0
Rhizosphere 60
Stem 0
Stem Tuber 0
Unclassified 20.71

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25162J39368_1003220 3300002737 Bacteria 5024
2 JGI25154J39366_1000021 3300002738 Bacteria 221559
3 JGI25164J39214_1001586 3300002772 Bacteria 4846
4 JGI25165J46597_1001427 3300003214 Bacteria 12848
5 JGI25153J46596_10000412 3300003215 Bacteria 28300
6 JGI25153J46596_10003899 3300003215 Bacteria 8194
7 rootH2_10054595 3300003320 Bacteria 3079
8 rootH2_10059195 3300003320 Bacteria 13284
9 rootL2_10016923 3300003322 Bacteria 7253
10 rootL2_10156923 3300003322 Bacteria 7344
11 rootH1_10007228 3300003316 Bacteria 1529
12 rootH1_10007228 3300003323 Bacteria 16763
13 rootH1_10012483 3300003323 Bacteria 1849
14 rootH1_10053128 3300003323 Bacteria 9273
15 rootH1_10315145 3300003323 Bacteria 2727
16 Ga0065165_1008355 3300005262 Bacteria 4864
17 Ga0070683_100013531 3300005329 Bacteria 7120
18 Ga0070669_100406890 3300005353 Bacteria 1114
19 Ga0070714_100341714 3300005435 Bacteria 1404
20 Ga0070684_100048333 3300005535 Bacteria 3691
21 Ga0068853_100061766 3300005539 Bacteria 3241
22 Ga0068853_100418733 3300005539 Bacteria 1256
23 Ga0070665_100000205 3300005548 Bacteria 103515
24 Ga0068857_100036076 3300005577 Bacteria 4381
25 Ga0075365_10139596 3300006038 Bacteria 1682
26 Ga0105240_10406206 3300009093 Bacteria 1533
27 Ga0105240_10531232 3300009093 Bacteria 1304
28 Ga0105237_10009739 3300009545 Bacteria 10280
29 Ga0105237_10022897 3300009545 Bacteria 6407
30 Ga0105238_10132971 3300009551 Bacteria 2466
31 Ga0105238_10163103 3300009551 Bacteria 2205
32 Ga0157371_10178316 3300013102 Bacteria 1519
33 Ga0157370_10000022 3300013104 Bacteria 163793
34 Ga0157370_10240142 3300013104 Bacteria 1676
35 Ga0157370_10329112 3300013104 Bacteria 1409
36 Ga0163162_10000208 3300013306 Bacteria 54338
37 Ga0157372_10001128 3300013307 Bacteria 28999
38 Ga0157372_10016001 3300013307 Bacteria 8046
39 Ga0182008_10000290 3300014497 Bacteria 39578
40 Ga0182006_1072992 3300015261 Bacteria 1267
41 Ga0163161_10000994 3300017792 Bacteria 21662
42 Ga0163161_10079597 3300017792 Bacteria 2410
43 Ga0213875_10004335 3300021388 Bacteria 7815
44 Ga0224572_1006222 3300024225 Bacteria 2153
45 Ga0207427_100152 3300025231 Bacteria 78389
46 Ga0209437_100164 3300025233 Bacteria 145317
47 Ga0209646_1000050 3300025246 Bacteria 296599
48 Ga0209026_1000240 3300025250 Bacteria 71671
49 Ga0209129_1007358 3300025258 Bacteria 3300
50 Ga0209233_1000038 3300025261 Bacteria 548972
51 Ga0209758_1001281 3300025297 Bacteria 31000
52 Ga0209050_1001063 3300025298 Bacteria 33728
53 Ga0209050_1017543 3300025298 Bacteria 2844
54 Ga0209050_1021459 3300025298 Bacteria 2354
55 Ga0207426_1000293 3300025302 Bacteria 98805
56 Ga0207647_10000063 3300025904 Bacteria 83442
57 Ga0207684_10030471 3300025910 Bacteria 4591
58 Ga0207695_10027089 3300025913 Bacteria 6385
59 Ga0207671_10015560 3300025914 Bacteria 5950
60 Ga0207671_10022112 3300025914 Bacteria 4813
61 Ga0207681_10395260 3300025923 Bacteria 1115
62 Ga0207661_10114005 3300025944 Bacteria 2291
63 Ga0207639_10010820 3300026041 Bacteria 6326
64 Ga0207674_10050569 3300026116 Bacteria 4245
65 Ga0268266_10000333 3300028379 Bacteria 74168
66 Ga0307511_10000139 3300030521 Bacteria 67385
67 Ga0316176_1114001 3300030732 Bacteria 10292
68 Ga0316183_1079365 3300030742 Bacteria 35752
69 Ga0316181_1065839 3300030744 Bacteria 49342
70 Ga0265327_10000306 3300031251 Bacteria 95199
71 Ga0265316_10127442 3300031344 Bacteria 1919
72 Ga0307513_10090806 3300031456 Bacteria 3114
73 Ga0307510_10010171 3300033180 Bacteria 11185
74 Ga0395905_0636940 3300037471 Bacteria 968
75 Ga0436364_0122786 3300037853 Unclassified 1266
76 Ga0436364_0977819 3300037853 Bacteria 921
77 Ga0436364_1170121 3300037853 Bacteria 33124
78 Ga0436360_0558567 3300039438 Bacteria 1072
79 Ga0436363_0390191 3300039450 Bacteria 3954
80 Ga0466969_0004857 3300044656 Bacteria 7158
81 Ga0466969_0033749 3300044656 Bacteria 2597
82 Ga0466966_0143126 3300044684 Bacteria 1460
83 Ga0466961_0003291 3300044693 Bacteria 10066
84 Ga0466971_0006876 3300044719 Bacteria 4946
85 Ga0466971_0015013 3300044719 Bacteria 3407
86 Ga0466970_0042251 3300044765 Bacteria 2424
87 Ga0466959_0007926 3300045049 Bacteria 7481
88 Ga0466959_0033002 3300045049 Bacteria 3831
89 Ga0466958_0024749 3300045836 Bacteria 3533
90 Ga0495638_0000054 3300046460 Bacteria 196524
91 Ga0495585_0000902 3300046492 Bacteria 25158
92 Ga0495583_0074497 3300046506 Bacteria 1486
93 Ga0495606_0000142 3300046507 Bacteria 123277
94 Ga0495606_0043421 3300046507 Bacteria 2998
95 Ga0495610_0003808 3300046512 Bacteria 11502
96 Ga0495648_0028229 3300046524 Bacteria 3741
97 Ga0495609_0018181 3300046538 Bacteria 3259
98 Ga0495622_0022936 3300046557 Bacteria 2909
99 Ga0495668_0000003 3300046616 Bacteria 695023
100 Ga0495625_0001822 3300046660 Bacteria 24395
101 Ga0495661_0024459 3300046665 Bacteria 3909
102 Ga0495660_0011495 3300046810 Bacteria 5135
103 Ga0495687_006547 3300047443 Bacteria 7109
104 Ga0495686_0000040 3300047472 Bacteria 301210
105 Ga0495686_0098564 3300047472 Bacteria 1766
106 Ga0495614_0020950 3300048089 Bacteria 2826
107 Ga0496122_0001254 3300048925 Bacteria 42541
108 Ga0496123_0002075 3300048926 Bacteria 25802
109 Ga0496125_0138940 3300048928 Bacteria 1693
110 Ga0495678_026031 3300049459 Bacteria 2504
111 Ga0501037_0203451 3300049573 Bacteria 1398
112 Ga0501038_0202106 3300049574 Bacteria 1594
113 Ga0501047_0087961 3300049581 Unclassified 2984
114 Ga0501067_0043586 3300049583 Bacteria 2492
115 Ga0501044_0017559 3300049823 Bacteria 7676
116 Ga0501044_0175254 3300049823 Bacteria 2114
117 Ga0500644_0000415 3300053088 Bacteria 20101
118 Ga0500644_0009760 3300053088 Bacteria 2578
119 Ga0500569_001794 3300053109 Bacteria 4114
120 Ga0500652_034092 3300053131 Bacteria 2015
121 Ga0500658_0008355 3300053134 Bacteria 3826
122 Ga0500577_0003010 3300053142 Bacteria 4348
123 Ga0500616_0000015 3300053153 Bacteria 633259
124 Ga0500616_0013208 3300053153 Bacteria 4806
125 Ga0500616_0043442 3300053153 Bacteria 2402
126 Ga0500622_0002709 3300053156 Bacteria 12531
127 Ga0500645_024342 3300053730 Bacteria 1851
128 Ga0466962_0004397 3300061719 Bacteria 6759
129 Ga0466962_0048789 3300061719 Bacteria 2023

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 iso_pu_bacteria 2857472729 2857476668 269
2 3300021388 Ga0213875_10004335 Ga0213875_100043356 271
3 3300037853 Ga0436364_1170121 Ga0436364_1170121_18493_19392 271
4 3300039450 Ga0436363_0390191 Ga0436363_0390191_181_1005 272
5 3300025910 Ga0207684_10030471 Ga0207684_100304715 273
6 3300037853 Ga0436364_0977819 Ga0436364_0977819_19_846 273
7 3300039438 Ga0436360_0558567 Ga0436360_0558567_41_868 273
8 3300044684 Ga0466966_0143126 Ga0466966_0143126_484_1380 273
9 3300044719 Ga0466971_0015013 Ga0466971_0015013_980_1876 273
10 3300044765 Ga0466970_0042251 Ga0466970_0042251_712_1608 273
11 3300045049 Ga0466959_0007926 Ga0466959_0007926_2251_3147 273
12 3300045836 Ga0466958_0024749 Ga0466958_0024749_343_1239 273
13 3300061719 Ga0466962_0048789 Ga0466962_0048789_567_1463 273
14 3300044656 Ga0466969_0033749 Ga0466969_0033749_506_1402 276
15 3300049823 Ga0501044_0175254 Ga0501044_0175254_33_875 280
16 3300005539 Ga0068853_100061766 Ga0068853_1000617662 282
17 3300005548 Ga0070665_100000205 Ga0070665_10000020550 282
18 3300009093 Ga0105240_10531232 Ga0105240_105312321 282
19 3300013306 Ga0163162_10000208 Ga0163162_1000020832 282
20 3300026041 Ga0207639_10010820 Ga0207639_100108207 282
21 3300028379 Ga0268266_10000333 Ga0268266_1000033341 282
22 3300003320 rootH2_10059195 rootH2_100591954 284
23 3300030742 Ga0316183_1079365 Ga0316183_10793656 284
24 3300030744 Ga0316181_1065839 Ga0316181_10658393 284
25 3300003215 JGI25153J46596_10000412 JGI25153J46596_1000041231 285
26 3300003215 JGI25153J46596_10003899 JGI25153J46596_100038996 285
27 3300003322 rootL2_10156923 rootL2_101569235 285
28 3300009093 Ga0105240_10406206 Ga0105240_104062062 285
29 3300025258 Ga0209129_1007358 Ga0209129_10073582 285
30 3300025297 Ga0209758_1001281 Ga0209758_10012817 285
31 3300045049 Ga0466959_0033002 Ga0466959_0033002_2774_3748 285
32 3300009551 Ga0105238_10163103 Ga0105238_101631032 286
33 3300044656 Ga0466969_0004857 Ga0466969_0004857_122_1009 288
34 3300044693 Ga0466961_0003291 Ga0466961_0003291_8222_9109 288
35 3300044719 Ga0466971_0006876 Ga0466971_0006876_103_990 288
36 3300061719 Ga0466962_0004397 Ga0466962_0004397_120_1007 288
37 iso_pu_bacteria 2711768088 2712198008 289
38 iso_pu_bacteria 2919425241 2919427856 289
39 3300002738 JGI25154J39366_1000021 JGI25154J39366_100002127 290
40 3300025246 Ga0209646_1000050 Ga0209646_1000050228 290
41 3300025250 Ga0209026_1000240 Ga0209026_100024056 290
42 3300049583 Ga0501067_0043586 Ga0501067_0043586_628_1551 290
43 iso_pu_bacteria 2862178590 2862185578 291
44 iso_pu_bacteria 2919073203 2919079456 291
45 iso_pu_bacteria 2842903701 2842907476 292
46 iso_pu_bacteria 2884791551 2884792340 292
47 iso_pu_bacteria 2929177148 2929179573 292
48 iso_pu_bacteria 2929921140 2929926185 292
49 iso_pu_bacteria 2946013367 2946018616 292
50 iso_pu_bacteria 8003151029 8003156027 292
51 3300005539 Ga0068853_100418733 Ga0068853_1004187331 293
52 3300009551 Ga0105238_10132971 Ga0105238_101329713 293
53 3300031344 Ga0265316_10127442 Ga0265316_101274422 293
54 3300053730 Ga0500645_024342 Ga0500645_024342_579_1463 293
55 3300005535 Ga0070684_100048333 Ga0070684_1000483332 294
56 3300013307 Ga0157372_10001128 Ga0157372_100011284 294
57 3300024225 Ga0224572_1006222 Ga0224572_10062223 294
58 3300005329 Ga0070683_100013531 Ga0070683_1000135318 295
59 3300005435 Ga0070714_100341714 Ga0070714_1003417141 295
60 3300006038 Ga0075365_10139596 Ga0075365_101395962 295
61 3300013307 Ga0157372_10016001 Ga0157372_100160017 295
62 3300025944 Ga0207661_10114005 Ga0207661_101140052 295
63 3300037471 Ga0395905_0636940 Ga0395905_0636940_15_920 295
64 3300037853 Ga0436364_0122786 Ga0436364_0122786_15_929 295
65 3300046506 Ga0495583_0074497 Ga0495583_0074497_551_1441 295
66 3300002737 JGI25162J39368_1003220 JGI25162J39368_10032204 296
67 3300002772 JGI25164J39214_1001586 JGI25164J39214_10015864 296
68 3300003214 JGI25165J46597_1001427 JGI25165J46597_100142718 296
69 3300003320 rootH2_10054595 rootH2_100545953 296
70 3300003322 rootL2_10016923 rootL2_100169234 296
71 3300003323 rootH1_10007228 rootH1_100072286 296
72 3300003323 rootH1_10012483 rootH1_100124832 296
73 3300003323 rootH1_10053128 rootH1_100531283 296
74 3300003323 rootH1_10315145 rootH1_103151452 296
75 3300005262 Ga0065165_1008355 Ga0065165_10083554 296
76 3300005353 Ga0070669_100406890 Ga0070669_1004068901 296
77 3300005577 Ga0068857_100036076 Ga0068857_1000360763 296
78 3300009545 Ga0105237_10009739 Ga0105237_100097397 296
79 3300009545 Ga0105237_10022897 Ga0105237_100228976 296
80 3300013102 Ga0157371_10178316 Ga0157371_101783161 296
81 3300013104 Ga0157370_10000022 Ga0157370_1000002221 296
82 3300013104 Ga0157370_10240142 Ga0157370_102401421 296
83 3300013104 Ga0157370_10329112 Ga0157370_103291122 296
84 3300014497 Ga0182008_10000290 Ga0182008_1000029010 296
85 3300015261 Ga0182006_1072992 Ga0182006_10729921 296
86 3300017792 Ga0163161_10000994 Ga0163161_100009945 296
87 3300017792 Ga0163161_10079597 Ga0163161_100795973 296
88 3300025231 Ga0207427_100152 Ga0207427_10015252 296
89 3300025233 Ga0209437_100164 Ga0209437_100164110 296
90 3300025261 Ga0209233_1000038 Ga0209233_1000038492 296
91 3300025298 Ga0209050_1001063 Ga0209050_100106321 296
92 3300025298 Ga0209050_1017543 Ga0209050_10175434 296
93 3300025298 Ga0209050_1021459 Ga0209050_10214592 296
94 3300025302 Ga0207426_1000293 Ga0207426_100029343 296
95 3300025904 Ga0207647_10000063 Ga0207647_1000006312 296
96 3300025913 Ga0207695_10027089 Ga0207695_100270895 296
97 3300025914 Ga0207671_10015560 Ga0207671_100155603 296
98 3300025914 Ga0207671_10022112 Ga0207671_100221126 296
99 3300025923 Ga0207681_10395260 Ga0207681_103952602 296
100 3300026116 Ga0207674_10050569 Ga0207674_100505693 296
101 3300030521 Ga0307511_10000139 Ga0307511_1000013932 296
102 3300030732 Ga0316176_1114001 Ga0316176_11140012 296
103 3300031251 Ga0265327_10000306 Ga0265327_1000030627 296
104 3300031456 Ga0307513_10090806 Ga0307513_100908064 296
105 3300033180 Ga0307510_10010171 Ga0307510_100101719 296
106 3300046460 Ga0495638_0000054 Ga0495638_0000054_105895_106797 296
107 3300046492 Ga0495585_0000902 Ga0495585_0000902_4714_5604 296
108 3300046507 Ga0495606_0000142 Ga0495606_0000142_18503_19393 296
109 3300046507 Ga0495606_0043421 Ga0495606_0043421_500_1390 296
110 3300046512 Ga0495610_0003808 Ga0495610_0003808_829_1767 296
111 3300046524 Ga0495648_0028229 Ga0495648_0028229_2102_2992 296
112 3300046538 Ga0495609_0018181 Ga0495609_0018181_1042_1932 296
113 3300046557 Ga0495622_0022936 Ga0495622_0022936_1065_1955 296
114 3300046616 Ga0495668_0000003 Ga0495668_0000003_646311_647201 296
115 3300046660 Ga0495625_0001822 Ga0495625_0001822_1285_2175 296
116 3300046665 Ga0495661_0024459 Ga0495661_0024459_675_1571 296
117 3300046810 Ga0495660_0011495 Ga0495660_0011495_1233_2123 296
118 3300047443 Ga0495687_006547 Ga0495687_006547_6113_7006 296
119 3300047472 Ga0495686_0000040 Ga0495686_0000040_242633_243523 296
120 3300047472 Ga0495686_0098564 Ga0495686_0098564_654_1544 296
121 3300048089 Ga0495614_0020950 Ga0495614_0020950_1144_2034 296
122 3300048925 Ga0496122_0001254 Ga0496122_0001254_1203_2093 296
123 3300048926 Ga0496123_0002075 Ga0496123_0002075_6934_7824 296
124 3300048928 Ga0496125_0138940 Ga0496125_0138940_250_1140 296
125 3300049459 Ga0495678_026031 Ga0495678_026031_356_1246 296
126 3300049573 Ga0501037_0203451 Ga0501037_0203451_452_1375 296
127 3300049574 Ga0501038_0202106 Ga0501038_0202106_66_989 296
128 3300049581 Ga0501047_0087961 Ga0501047_0087961_270_1160 296
129 3300049823 Ga0501044_0017559 Ga0501044_0017559_6635_7558 296
130 3300053088 Ga0500644_0000415 Ga0500644_0000415_3552_4493 296
131 3300053088 Ga0500644_0009760 Ga0500644_0009760_1590_2528 296
132 3300053109 Ga0500569_001794 Ga0500569_001794_1672_2667 296
133 3300053131 Ga0500652_034092 Ga0500652_034092_910_1848 296
134 3300053134 Ga0500658_0008355 Ga0500658_0008355_433_1428 296
135 3300053142 Ga0500577_0003010 Ga0500577_0003010_1775_2770 296
136 3300053153 Ga0500616_0000015 Ga0500616_0000015_47707_48645 296
137 3300053153 Ga0500616_0013208 Ga0500616_0013208_3174_4064 296
138 3300053153 Ga0500616_0043442 Ga0500616_0043442_755_1750 296
139 3300053156 Ga0500622_0002709 Ga0500622_0002709_3181_4119 296
140 iso_pu_bacteria 2945977869 2945981987 296

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF05368

NmrA

NmrA-like family

37

122

0.93

PF01073

3Beta_HSD

3-beta hydroxysteroid dehydrogenase/isomerase family

38

155

0.88

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

37

255

0.85

PF13460

NAD_binding_10

NAD(P)H-binding

41

158

0.84

PF04321

RmlD_sub_bind

RmlD substrate binding domain

35

319

0.68

Structural Annotation

Top 5 Hits

ID Description Score Start End
1xa0-assembly1.cif.gz_A crystal structure of mcsg target apc35536 from bacillus stearothermophilus 0.8482 2 70
6s2j-assembly1.cif.gz_A square conformation of ktra r16k mutant ring with bound atp 0.8436 2 109
4j91-assembly1.cif.gz_C-2 diamond-shaped octameric structure of ktra with adp bound 0.8349 3 109
4j91-assembly1.cif.gz_B-2 diamond-shaped octameric structure of ktra with adp bound 0.8347 3 109
4j91-assembly1.cif.gz_D-2 diamond-shaped octameric structure of ktra with adp bound 0.8346 3 109
ID Description Score Start End Superfamily
af_Q12177_1_262_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9647 1 258 3.40.50.720
af_Q9Y7K4_1_260_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9635 1 259 3.40.50.720
af_Q9Y7K4_1_260_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9563 1 259 3.40.50.720
af_Q12177_1_262_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9467 1 258 3.40.50.720
af_K7K156_39_177_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8839 1 72 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A4Q8QRZ3-F1-model_v4 NAD-dependent epimerase/dehydratase domain-containing protein 0.9869 1 152 GO:0004029
GO:0005737
AF-X8BAQ2-F1-model_v4 deleted 0.9865 1 94
AF-A0A7V3MJ56-F1-model_v4 3-beta hydroxysteroid dehydrogenase 0.9807 159 296 GO:0004029
GO:0005737
AF-A0A2V9YB20-F1-model_v4 3-beta hydroxysteroid dehydrogenase 0.98 2 294 GO:0004029
GO:0005737
AF-A0A4Q6CMB8-F1-model_v4 deleted 0.978 1 83

Feature Viewer

pLDDT pTM Quality
95.35 0.93 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map