F177926

General Info

Members Datasets Scaffolds Average Seq Length
139 110 278 417

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2775506735|2775655917
Length 463
Sequence TGTSIPQTPHQASREIPHGGPVARVRSGAWVIACCWFAITVDGYDLIVYGTVVPALIGGEWALTPAQAGQIGSLALVGMMIGALLAGVLTDRMGRRRLMIACVAWFTVGMALSAVSPSPEIFGLTRLASGIGLGGLMPTAIAMTLEYAKPKLRSTANAIMFSGYSIGGIIASLSAMWILGAAGWRAMFWIGVGLGTVLLVVVAAALPESVTFLVGRGRHGEAAALAAKYGIAVPQPLAGDAQRTGVRALLDRRFAVSTVLFWLVVANGLLLVYGLNTWLAQIMREAGYPLGTALAFLLALNAGAIVGTPLLGLLADRIGSRIVVGSMFFGAAAAILLLMFRFPTPVLLTLVAVAGACTIGTQTLLTAFIGGFYPERLRAAGLGWALGIGRIGAIAGPLYGGLILSTGWGFQANFLAFAVPALLAAVLVLLIRGRGHADTASVASPGKDTLGVENSEQGSVQHR

Samples

Sample ID Description Type Environment
1 3300001991 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2 Metagenome Rhizosphere
2 3300002077 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3 Metagenome Rhizosphere
3 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
4 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
5 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
6 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
7 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
8 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
9 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
10 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
11 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
12 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
13 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
14 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
15 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
16 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
17 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
18 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
19 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
20 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
21 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
22 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
23 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
24 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
35 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300030083 Coralloid root microbial communities from Jiquipilas, Chiapas, Mexico - JPPOOL-T1 Metagenome Unclassified
39 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
40 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
41 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
42 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
43 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
44 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
45 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
46 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
47 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
48 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
49 3300038705 Coralloid root microbial communities from Raymundo Flores, Chiapas, Mexico - RF1-T1 Metagenome Unclassified
50 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
51 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
52 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
53 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
54 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
55 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
56 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
57 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
58 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
59 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
60 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
61 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
62 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
63 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
64 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
65 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
66 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
67 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
68 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
69 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
70 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
71 2775506735 Arthrobacter sp. S95 1704 Isolate Unclassified
72 2551306519 Bacillus sp. WBUNB004 Isolate Rhizosphere
73 2558860112 Pseudonocardia acaciae DSM 45401 Isolate Unclassified
74 2585428157 Microbacterium sp. CF335 Isolate Rhizosphere
75 2622736626 Micromonospora rhizosphaerae DSM 45431 Isolate Rhizosphere
76 2643221615 Nocardioides sp. Root224 Isolate Unclassified
77 2643221657 Nocardioides sp. Root1257 Isolate Unclassified
78 2643221729 Bacillus sp. Root11 Isolate Unclassified
79 2643221730 Bacillus sp. Root131 Isolate Unclassified
80 2684622632 Bacillus cereus 905 Isolate Unclassified
81 2695420987 Bacillus thuringiensis KNU-07 Isolate Unclassified
82 2718218445 Bacillus sp. B25(2016b) Isolate Rhizosphere
83 2747842429 Microbacterium sp. WCS2014-259 Isolate Unclassified
84 2811994874 Nocardioides sp. SLBN-35 Isolate Unclassified
85 2816332139 Pseudonocardia kunmingensis DSM 45301 Isolate Unclassified
86 2818991443 Bacillus thuringiensis 1230 Isolate Unclassified
87 2844849076 Arthrobacter cupressi DSM 24664 Isolate Rhizosphere
88 2857481737 Nocardioides sp. R-74106 Isolate Unclassified
89 2857542790 Achromobacter sp. R-72367 Isolate Unclassified
90 2857710386 Brevibacterium sp. R-73093 Isolate Unclassified
91 2858688981 Cupriavidus sp. UYMMa02A Isolate Unclassified
92 2870782633 Pseudonocardia eucalypti DSM 45351 Isolate Unclassified
93 2884693830 Nonomuraea phyllanthi WYY166 Isolate Unclassified
94 2893684298 Kocuria palustris DSM 11925 Isolate Rhizosphere
95 2895442618 Nonomuraea phyllanthi PA1-10 Isolate Unclassified
96 2899359706 Amycolatopsis anabasis EGI 650086 Isolate Unclassified
97 2904497146 Arthrobacter sp. 1276 Isolate Rhizosphere
98 2919034639 Paenarthrobacter nitroguajacolicus 247 Isolate Rhizosphere
99 2929233124 Bacillus sp. R-74298 Hybrid assembly Isolate Unclassified
100 2945941187 Arthrobacter pascens W1I14 Isolate Rhizosphere
101 2947426588 Bacillus sp. RZ2MS9 Isolate Rhizosphere
102 2965761152 Bacillus sp. COPE52 Isolate Unclassified
103 2979083700 Bacillus toyonensis SORGH_AS 407 Isolate Unclassified
104 8002392321 Alcaligenes faecalis Mc250 Isolate Rhizosphere
105 8003314358 Amycolatopsis sp. MtRt-6 Isolate Unclassified
106 8022621104 Bacillus sp. PIC28 Isolate Rhizosphere
107 8023438354 Bacillus sp. BH2 Isolate Unclassified
108 8023444577 Bacillus sp. BH32 Isolate Unclassified
109 8053945823 Actinomadura terrae OS3-83 Isolate Rhizosphere
110 8054472261 Pseudonocardia terrae RS11V-5 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 66.19
Metatranscriptomes 0
Isolates 33.81

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 13.67
Nodule 0
Rhizoplane 5.76
Rhizosphere 48.92
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24743J22301_10001227 3300001991 Bacteria 3477
2 JGI24744J21845_10006912 3300002077 Bacteria 2345
3 JGI25151J46595_10023289 3300003187 Bacteria 2554
4 JGI25151J46595_10023456 3300003187 Bacteria 2542
5 Ga0068869_100096765 3300005334 Bacteria 2228
6 Ga0068868_100077081 3300005338 Bacteria 2666
7 Ga0070675_100086784 3300005354 Bacteria 2616
8 Ga0070673_100186981 3300005364 Bacteria 1777
9 Ga0070678_100063707 3300005456 Bacteria 2729
10 Ga0070678_100128521 3300005456 Bacteria 2009
11 Ga0070672_100143905 3300005543 Bacteria 1969
12 Ga0068859_100143830 3300005617 Bacteria 2459
13 Ga0075365_10001815 3300006038 Bacteria 9979
14 Ga0075365_10031718 3300006038 Bacteria 3391
15 Ga0075365_10054151 3300006038 Bacteria 2660
16 Ga0075365_10106940 3300006038 Bacteria 1920
17 Ga0075365_10128096 3300006038 Bacteria 1755
18 Ga0075369_10015759 3300006186 Bacteria 3039
19 Ga0097620_100143829 3300006931 Bacteria 2459
20 Ga0105250_10008430 3300009092 Bacteria 4380
21 Ga0105250_10016294 3300009092 Bacteria 3031
22 Ga0105245_10401342 3300009098 Bacteria 1370
23 Ga0105242_10002748 3300009176 Bacteria 13770
24 Ga0157373_10022696 3300013100 Bacteria 4552
25 Ga0157374_10126773 3300013296 Bacteria 2468
26 Ga0157375_10183301 3300013308 Bacteria 2246
27 Ga0157379_10201837 3300014968 Bacteria 1798
28 Ga0209147_101532 3300025229 Bacteria 8033
29 Ga0209130_1000376 3300025284 Bacteria 50157
30 Ga0209025_1004854 3300025294 Bacteria 11343
31 Ga0209025_1011241 3300025294 Bacteria 5930
32 Ga0209025_1030111 3300025294 Bacteria 2606
33 Ga0209025_1030277 3300025294 Bacteria 2594
34 Ga0207655_1003283 3300025728 Bacteria 12140
35 Ga0207655_1021121 3300025728 Bacteria 3317
36 Ga0207655_1029541 3300025728 Bacteria 2563
37 Ga0207713_1011637 3300025735 Bacteria 4764
38 Ga0207688_10001438 3300025901 Bacteria 12440
39 Ga0207706_10010497 3300025933 Bacteria 8464
40 Ga0207686_10004439 3300025934 Bacteria 7522
41 Ga0207665_10005293 3300025939 Bacteria 8624
42 Ga0207691_10040963 3300025940 Bacteria 4279
43 Ga0207689_10039028 3300025942 Bacteria 3932
44 Ga0207640_10189460 3300025981 Bacteria 1549
45 Ga0207708_10044285 3300026075 Bacteria 3391
46 Ga0207641_10100384 3300026088 Bacteria 2549
47 Ga0207648_10070489 3300026089 Bacteria 3047
48 Ga0207683_10106126 3300026121 Bacteria 2511
49 Ga0268266_10006546 3300028379 Bacteria 10658
50 Ga0237817_10009 3300030083 Bacteria 78658
51 Ga0237817_10149 3300030083 Bacteria 20713
52 Ga0316183_1051678 3300030742 Bacteria 1741
53 Ga0307513_10000684 3300031456 Bacteria 48768
54 Ga0307513_10001530 3300031456 Bacteria 33128
55 Ga0307513_10039076 3300031456 Bacteria 5263
56 Ga0307513_10078884 3300031456 Bacteria 3404
57 Ga0307405_10148535 3300031731 Bacteria 1645
58 Ga0307518_10001367 3300031838 Bacteria 18139
59 Ga0307410_10080748 3300031852 Bacteria 2282
60 Ga0307410_10129665 3300031852 Bacteria 1851
61 Ga0307409_100042015 3300031995 Bacteria 3420
62 Ga0307416_100012042 3300032002 Bacteria 5805
63 Ga0307507_10000498 3300033179 Bacteria 82993
64 Ga0307507_10018150 3300033179 Bacteria 8023
65 Ga0395900_0073862 3300037418 Bacteria 3507
66 Ga0395898_0003911 3300037466 Bacteria 16451
67 Ga0237819_00999 3300038705 Bacteria 8546
68 Ga0237819_02562 3300038705 Bacteria 3591
69 Ga0451793_0116483 3300041452 Bacteria 2077
70 Ga0439449_0001051 3300042007 Bacteria 10886
71 Ga0466972_0013736 3300044658 Bacteria 4064
72 Ga0466972_0065210 3300044658 Bacteria 1742
73 Ga0466965_0006735 3300044683 Bacteria 5242
74 Ga0466970_0024242 3300044765 Bacteria 3172
75 Ga0466957_0009692 3300044842 Bacteria 5499
76 Ga0466960_0003319 3300044901 Bacteria 6177
77 Ga0466967_0010578 3300045976 Bacteria 6931
78 Ga0495670_0073952 3300046691 Bacteria 1728
79 Ga0496102_0058467 3300048905 Bacteria 3523
80 Ga0496108_0001627 3300048911 Bacteria 17802
81 Ga0496108_0089446 3300048911 Bacteria 2617
82 Ga0496109_0135123 3300048912 Bacteria 2304
83 Ga0496110_0071425 3300048913 Bacteria 3078
84 Ga0496114_0080315 3300048917 Bacteria 2754
85 Ga0496115_0076533 3300048918 Bacteria 2720
86 Ga0496124_0000038 3300048927 Bacteria 312485
87 Ga0501031_0034037 3300049568 Bacteria 3324
88 nmdc:mga00v17_24959_c1 3300050491 Bacteria 3469
89 nmdc:mga0yw44_10749_c1 3300050492 Bacteria 4690
90 nmdc:mga0yw44_931_c1 3300050492 Bacteria 11095
91 nmdc:mga0sz30_37524_c1 3300050516 Bacteria 2028
92 Ga0500641_0028633 3300053096 Bacteria 2177
93 2775655917 2775506735 Bacteria 4556596
94 2553394300 2551306519 Bacteria 5465154
95 2558906168 2558860112 Bacteria 9931328
96 2558909722 2558860112 Bacteria 9931328
97 2558914315 2558860112 Bacteria 9931328
98 2588108019 2585428157 Bacteria 3018951
99 2623590489 2622736626 Bacteria 7181580
100 2644093487 2643221615 Bacteria 5487866
101 2644323097 2643221657 Bacteria 5490246
102 2644702923 2643221729 Bacteria 6621700
103 2644711358 2643221730 Bacteria 6523787
104 2685148319 2684622632 Bacteria 5380049
105 2698324839 2695420987 Bacteria 6152737
106 2721503699 2718218445 Bacteria 5113413
107 2747953709 2747842429 Bacteria 3914386
108 2812332754 2811994874 Bacteria 5367947
109 2816504478 2816332139 Bacteria 9138787
110 2816508738 2816332139 Bacteria 9138787
111 2816512035 2816332139 Bacteria 9138787
112 2819584091 2818991443 Bacteria 6598732
113 2844850702 2844849076 Bacteria 4091819
114 2857483011 2857481737 Bacteria 4761446
115 2857544641 2857542790 Bacteria 5326616
116 2857710831 2857710386 Bacteria 3186771
117 2858689279 2858688981 Bacteria 8184122
118 2870784347 2870782633 Bacteria 9624083
119 2870787364 2870782633 Bacteria 9624083
120 2870788620 2870782633 Bacteria 9624083
121 2884703308 2884693830 Bacteria 11273186
122 2893684973 2893684298 Bacteria 2897960
123 2895443665 2895442618 Bacteria 11027144
124 2899365435 2899359706 Bacteria 10940472
125 2904497189 2904497146 Bacteria 4731781
126 2919036736 2919034639 Bacteria 4763403
127 2919037867 2919034639 Bacteria 4763403
128 2929233563 2929233124 Bacteria 5948380
129 2945943473 2945941187 Bacteria 4682474
130 2947427039 2947426588 Bacteria 5357194
131 2965761501 2965761152 Bacteria 5806513
132 2979084044 2979083700 Bacteria 5894929
133 8002394835 8002392321 Bacteria 4159911
134 8003319058 8003314358 Bacteria 10575343
135 8022621476 8022621104 Bacteria 5241040
136 8023438481 8023438354 Bacteria 5779374
137 8023450190 8023444577 Bacteria 5661597
138 8053949857 8053945823 Bacteria 8962862
139 8054474367 8054472261 Bacteria 7464355
140 JGI24743J22301_10001227
141 JGI24744J21845_10006912
142 JGI25151J46595_10023289
143 JGI25151J46595_10023456
144 Ga0068869_100096765
145 Ga0068868_100077081
146 Ga0070675_100086784
147 Ga0070673_100186981
148 Ga0070678_100063707
149 Ga0070678_100128521
150 Ga0070672_100143905
151 Ga0068859_100143830
152 Ga0075365_10001815
153 Ga0075365_10031718
154 Ga0075365_10054151
155 Ga0075365_10106940
156 Ga0075365_10128096
157 Ga0075369_10015759
158 Ga0097620_100143829
159 Ga0105250_10008430
160 Ga0105250_10016294
161 Ga0105245_10401342
162 Ga0105242_10002748
163 Ga0157373_10022696
164 Ga0157374_10126773
165 Ga0157375_10183301
166 Ga0157379_10201837
167 Ga0209147_101532
168 Ga0209130_1000376
169 Ga0209025_1004854
170 Ga0209025_1011241
171 Ga0209025_1030111
172 Ga0209025_1030277
173 Ga0207655_1003283
174 Ga0207655_1021121
175 Ga0207655_1029541
176 Ga0207713_1011637
177 Ga0207688_10001438
178 Ga0207706_10010497
179 Ga0207686_10004439
180 Ga0207665_10005293
181 Ga0207691_10040963
182 Ga0207689_10039028
183 Ga0207640_10189460
184 Ga0207708_10044285
185 Ga0207641_10100384
186 Ga0207648_10070489
187 Ga0207683_10106126
188 Ga0268266_10006546
189 Ga0237817_10009
190 Ga0237817_10149
191 Ga0316183_1051678
192 Ga0307513_10000684
193 Ga0307513_10001530
194 Ga0307513_10039076
195 Ga0307513_10078884
196 Ga0307405_10148535
197 Ga0307518_10001367
198 Ga0307410_10080748
199 Ga0307410_10129665
200 Ga0307409_100042015
201 Ga0307416_100012042
202 Ga0307507_10000498
203 Ga0307507_10018150
204 Ga0395900_0073862
205 Ga0395898_0003911
206 Ga0237819_00999
207 Ga0237819_02562
208 Ga0451793_0116483
209 Ga0439449_0001051
210 Ga0466972_0013736
211 Ga0466972_0065210
212 Ga0466965_0006735
213 Ga0466970_0024242
214 Ga0466957_0009692
215 Ga0466960_0003319
216 Ga0466967_0010578
217 Ga0495670_0073952
218 Ga0496102_0058467
219 Ga0496108_0001627
220 Ga0496108_0089446
221 Ga0496109_0135123
222 Ga0496110_0071425
223 Ga0496114_0080315
224 Ga0496115_0076533
225 Ga0496124_0000038
226 Ga0501031_0034037
227 nmdc:mga00v17_24959_c1
228 nmdc:mga0yw44_10749_c1
229 nmdc:mga0yw44_931_c1
230 nmdc:mga0sz30_37524_c1
231 Ga0500641_0028633
232 2775655917
233 2553394300
234 2558906168
235 2558909722
236 2558914315
237 2588108019
238 2623590489
239 2644093487
240 2644323097
241 2644702923
242 2644711358
243 2685148319
244 2698324839
245 2721503699
246 2747953709
247 2812332754
248 2816504478
249 2816508738
250 2816512035
251 2819584091
252 2844850702
253 2857483011
254 2857544641
255 2857710831
256 2858689279
257 2870784347
258 2870787364
259 2870788620
260 2884703308
261 2893684973
262 2895443665
263 2899365435
264 2904497189
265 2919036736
266 2919037867
267 2929233563
268 2945943473
269 2947427039
270 2965761501
271 2979084044
272 8002394835
273 8003319058
274 8022621476
275 8023438481
276 8023450190
277 8053949857
278 8054474367

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00083

Sugar_tr

Sugar (and other) transporter

31

243

0.86

PF07690

MFS_1

Major Facilitator Superfamily

35

307

0.86

PF07690

MFS_1

Major Facilitator Superfamily

291

454

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
6g9x-assembly2.cif.gz_B crystal structure of a mfs transporter at 2.54 angstroem resolution 0.8437 22 386
6zgu-assembly2.cif.gz_B crystal structure of a mfs transporter with bound 3-(2-methylphenyl)propanoic acid at 2.41 angstroem resolution 0.8416 23 390
6zgr-assembly2.cif.gz_B crystal structure of a mfs transporter with bound 1-hydroxynaphthalene-2-carboxylic acid at 2.67 angstroem resolution 0.84 22 390
6hcl-assembly2.cif.gz_B crystal structure of a mfs transporter with ligand at 2.69 angstroem resolution 0.8392 22 390
6zgs-assembly1.cif.gz_A crystal structure of a mfs transporter with bound 3-phenylpropanoic acid at 2.39 angstroem resolution 0.8383 19 390
ID Description Score Start End Superfamily
af_P77589_213_398_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9245 213 389 1.20.1250.20
af_A0A1D6LG74_1_148_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9216 50 197 1.20.1250.20
af_O69695_42_237_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9036 23 181 1.20.1250.20
af_Q08268_301_491_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9022 213 388 1.20.1250.20
af_P53918_423_671_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.8986 215 389 1.20.1250.20
ID Description Score Start End GO Terms
AF-A0A7S4D9R6-F1-model_v4 Major facilitator superfamily (MFS) profile domain-containing protein 0.911 55 177 GO:0016020
GO:0022857
AF-A0A3D4YR93-F1-model_v4 MFS transporter 0.8981 60 180 GO:0016020
GO:0022857
AF-A0A353DBH9-F1-model_v4 MFS transporter 0.8949 18 180 GO:0016020
GO:0022857
AF-A0A7S4D9R6-F1-model_v4 Major facilitator superfamily (MFS) profile domain-containing protein 0.8908 55 177 GO:0016020
GO:0022857
AF-A0A6V8NNU3-F1-model_v4 Major facilitator superfamily (MFS) profile domain-containing protein 0.8833 17 178 GO:0016020
GO:0022857

Map