F177433

General Info

Members Datasets Scaffolds Average Seq Length
139 99 278 510

Family's Representative Sequence

Representative Sequence 3300046678|Ga0495599_0012639|Ga0495599_0012639_2133_3719
Length 528
Sequence LGHAAADLTVRGPMKIPSLLLRQLYTFGSLENTKEGFAFSLRNRLSDVTLTRLVRLRVDGDEIPLADVRVDFGGGREMAAPELSPQKPMPFPLKDIAHLRAKWHPLTHGSHEIKLMVEASGFGQLEIAVKDAIHDAQAKRTSIPYEKDAALNYAPKIISERQRFLAKAMGKELTHVVKPSFDPELTRGNVENFIGVAQVPLGLAGPLIVNGEHAKGEFLIPLATTEGTLVASYNRGMKVLNLSGGVTCTVSDDCMQRAPVFIFDSAREAREFRAWVNAHLPEIAKEAEATSSVAKMLFIDTFLASKFAFLRFNFSTGDAAGQNMTGRATFAACSWILEQVPTIRRFFLESNFATDKKASQVNVMRTRGKRVTAECTIPRDVLMSELRVEPESLTYHAGVANVGTLLSGANNNGLHSANGITAMFIATGQDVANVSEGAAGIIYSELTPERDLYISITIPSLIVATHGGGTALPTQRECLEILGCVGKGKAHKLAEIVAGVVLAGEISLAAAISSLEWVSSHEKYGRNR

Samples

Sample ID Description Type Environment
1 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
2 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
3 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
4 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
5 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
6 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
7 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
8 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
9 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
10 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
11 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
12 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
13 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
14 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
15 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
16 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
17 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
18 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
19 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
20 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
21 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
27 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
29 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
30 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
31 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
32 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
33 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
34 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
35 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
36 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
37 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
38 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
39 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
40 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
41 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
42 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
43 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
44 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
45 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
46 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
47 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
48 3300034820 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2 Metagenome Rhizosphere
49 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
50 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
51 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
52 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
53 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
54 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
55 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
56 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
57 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
58 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
59 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
60 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
61 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
62 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
63 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
64 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
65 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
66 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
67 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
68 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
69 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
70 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
71 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
72 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
73 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
74 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
75 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
76 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
77 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
78 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
79 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
80 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
81 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
82 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
83 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
84 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
85 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
86 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
87 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
88 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
89 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
90 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
91 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
92 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
93 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
94 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
95 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
96 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
97 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
98 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
99 2739367866 Hymenobacter sp. YR204 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 97.12
Metatranscriptomes 2.16
Isolates 0.72

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0.72
Rhizosphere 96.4
Stem 0
Stem Tuber 0
Unclassified 4.32

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495599_0012639 3300046678 Bacteria 5206
2 Ga0070666_10021933 3300005335 Bacteria 4142
3 Ga0070689_100029114 3300005340 Bacteria 4178
4 Ga0070687_100032135 3300005343 Bacteria 2580
5 Ga0070709_10000009 3300005434 Bacteria 178953
6 Ga0070662_100000236 3300005457 Bacteria 32626
7 Ga0070685_10000411 3300005466 Bacteria 25433
8 Ga0070686_100000146 3300005544 Bacteria 48181
9 Ga0070665_100000681 3300005548 Bacteria 45556
10 Ga0068862_100000407 3300005844 Bacteria 46524
11 Ga0070717_10190133 3300006028 Bacteria 1793
12 Ga0075434_100094303 3300006871 Bacteria 2998
13 Ga0075429_100096420 3300006880 Bacteria 2580
14 Ga0075436_100000080 3300006914 Bacteria 55351
15 Ga0075436_100090200 3300006914 Bacteria 2130
16 Ga0114129_10358823 3300009147 Bacteria 1929
17 Ga0105238_10000012 3300009551 Bacteria 258862
18 Ga0157380_10048288 3300014326 Bacteria 3352
19 Ga0207692_10033194 3300025898 Bacteria 2488
20 Ga0207680_10011792 3300025903 Bacteria 4430
21 Ga0207699_10000020 3300025906 Bacteria 179154
22 Ga0207662_10032059 3300025918 Bacteria 3056
23 Ga0207694_10000025 3300025924 Bacteria 258871
24 Ga0207706_10007766 3300025933 Bacteria 9902
25 Ga0207669_10059208 3300025937 Bacteria 2342
26 Ga0207712_10173504 3300025961 Bacteria 1687
27 Ga0207674_10082981 3300026116 Bacteria 3204
28 Ga0268266_10000663 3300028379 Bacteria 46544
29 Ga0268265_10000797 3300028380 Bacteria 29983
30 Ga0268264_10001266 3300028381 Bacteria 24005
31 Ga0265338_10029762 3300028800 Bacteria 5404
32 Ga0265320_10012312 3300031240 Bacteria 4987
33 Ga0265325_10022724 3300031241 Bacteria 3432
34 Ga0265340_10013854 3300031247 Bacteria 4225
35 Ga0265316_10021064 3300031344 Bacteria 5532
36 Ga0316579_10009187 3300031691 Bacteria 4150
37 Ga0316579_10016389 3300031691 Bacteria 3237
38 Ga0316579_10055369 3300031691 Bacteria 1860
39 Ga0265342_10038536 3300031712 Bacteria 2910
40 Ga0316576_10000796 3300031727 Bacteria 15878
41 Ga0316576_10004579 3300031727 Bacteria 8315
42 Ga0316576_10005667 3300031727 Bacteria 7675
43 Ga0316576_10008692 3300031727 Bacteria 6500
44 Ga0316576_10011403 3300031727 Bacteria 5825
45 Ga0316576_10025851 3300031727 Bacteria 4113
46 Ga0316576_10030899 3300031727 Bacteria 3797
47 Ga0316576_10047080 3300031727 Bacteria 3123
48 Ga0316576_10062882 3300031727 Bacteria 2723
49 Ga0316576_10094474 3300031727 Bacteria 2230
50 Ga0316578_10007135 3300031728 Bacteria 5576
51 Ga0316578_10017671 3300031728 Bacteria 3887
52 Ga0316578_10051320 3300031728 Bacteria 2415
53 Ga0307410_10022151 3300031852 Bacteria 3922
54 Ga0307409_100110364 3300031995 Bacteria 2305
55 Ga0307415_100019750 3300032126 Bacteria 4097
56 Ga0316583_10002099 3300032133 Bacteria 6850
57 Ga0316585_10002414 3300032137 Bacteria 5032
58 Ga0316585_10006500 3300032137 Unclassified 3343
59 Ga0316580_10005827 3300032139 Unclassified 3616
60 Ga0316592_1004564 3300033524 Unclassified 2580
61 Ga0316588_1008925 3300033528 Unclassified 2078
62 Ga0316596_1005502 3300033541 Bacteria 2897
63 Ga0373959_0000035 3300034820 Bacteria 29796
64 Ga0373929_0000019 3300035085 Bacteria 100075
65 Ga0373961_0000374 3300035241 Bacteria 19159
66 Ga0316574_0000934 3300035398 Bacteria 13033
67 Ga0316574_0010947 3300035398 Bacteria 5142
68 Ga0316574_0023546 3300035398 Unclassified 3677
69 Ga0316574_0025621 3300035398 Bacteria 3541
70 Ga0316574_0030029 3300035398 Bacteria 3288
71 Ga0316574_0034042 3300035398 Bacteria 3104
72 Ga0316574_0062944 3300035398 Bacteria 2332
73 Ga0316574_0068462 3300035398 Bacteria 2239
74 Ga0316574_0096188 3300035398 Bacteria 1892
75 Ga0373935_0010502 3300035692 Bacteria 5557
76 Ga0373927_0029773 3300035695 Bacteria 3561
77 Ga0373937_0056598 3300036401 Bacteria 3602
78 Ga0316582_0037159 3300036647 Unclassified 3017
79 Ga0316584_0001766 3300036712 Bacteria 13296
80 Ga0316584_0008673 3300036712 Bacteria 7015
81 Ga0316584_0014453 3300036712 Bacteria 5620
82 Ga0316584_0015815 3300036712 Bacteria 5402
83 Ga0316584_0025681 3300036712 Bacteria 4321
84 Ga0316584_0033311 3300036712 Bacteria 3816
85 Ga0316584_0040756 3300036712 Bacteria 3461
86 Ga0316584_0052395 3300036712 Bacteria 3052
87 Ga0316584_0052776 3300036712 Bacteria 3041
88 Ga0395899_0003252 3300037312 Bacteria 12877
89 Ga0395905_0001886 3300037471 Bacteria 24164
90 Ga0395905_0113446 3300037471 Bacteria 2546
91 Ga0395901_0023297 3300038443 Bacteria 6346
92 Ga0400484_01959 3300038725 Bacteria 4942
93 Ga0400490_34861 3300038726 Bacteria 5443
94 Ga0436365_0555552 3300039437 Bacteria 2640
95 Ga0451577_0001093 3300042876 Bacteria 38834
96 Ga0451577_0205656 3300042876 Bacteria 1777
97 Ga0466961_0001960 3300044693 Bacteria 12830
98 Ga0453684_0007019 3300044712 Bacteria 21042
99 Ga0453684_0043149 3300044712 Bacteria 6067
100 Ga0453684_0322960 3300044712 Bacteria 1747
101 Ga0451576_0192265 3300045051 Bacteria 2131
102 Ga0495651_0020748 3300046462 Bacteria 5101
103 Ga0495580_0092771 3300046472 Bacteria 2102
104 Ga0495608_0032446 3300046511 Bacteria 3530
105 Ga0495628_0040821 3300046516 Bacteria 3706
106 Ga0495630_0080545 3300046517 Bacteria 2456
107 Ga0495630_0088001 3300046517 Bacteria 2346
108 Ga0495630_0120156 3300046517 Bacteria 1993
109 Ga0495640_0016915 3300046533 Bacteria 5446
110 Ga0495586_0041929 3300046535 Bacteria 2465
111 Ga0495587_0065632 3300046536 Bacteria 2119
112 Ga0495667_0100139 3300046559 Bacteria 1875
113 Ga0495646_0063653 3300046680 Bacteria 2189
114 Ga0495658_0077280 3300046683 Bacteria 1947
115 Ga0495624_0048563 3300046690 Bacteria 2693
116 Ga0495604_0102816 3300047317 Bacteria 2097
117 Ga0495674_0153621 3300047319 Bacteria 1929
118 Ga0495680_0068883 3300047322 Bacteria 2701
119 Ga0495675_0007292 3300047444 Bacteria 6813
120 Ga0495684_0013010 3300047471 Bacteria 6422
121 Ga0495602_0054390 3300048088 Bacteria 3534
122 Ga0496114_0000007 3300048917 Bacteria 463098
123 Ga0501068_0090979 3300049584 Bacteria 1883
124 Ga0501072_0061950 3300049588 Bacteria 2951
125 Ga0501075_0012474 3300049591 Bacteria 6040
126 Ga0501075_0018950 3300049591 Bacteria 4989
127 Ga0501075_0101085 3300049591 Bacteria 2190
128 Ga0501077_0005932 3300049593 Bacteria 7456
129 Ga0501079_0052811 3300049741 Bacteria 3136
130 Ga0501080_0035343 3300049742 Bacteria 4663
131 nmdc:mga05p37_290306_c1 3300050507 Bacteria 1947
132 nmdc:mga0n895_252526_c1 3300050512 Bacteria 1790
133 nmdc:mga0n895_85577_c1 3300050512 Bacteria 3148
134 nmdc:mga0rr50_20910_c1 3300050513 Bacteria 4456
135 nmdc:mga08x19_186_c1 3300050514 Bacteria 49520
136 Ga0501084_0124198 3300054114 Bacteria 2171
137 Ga0501082_0000664 3300060353 Bacteria 30229
138 Ga0530510_0105023 3300061734 Bacteria 2067
139 2740031874 2739367866 Bacteria 4215900
140 Ga0495599_0012639
141 Ga0070666_10021933
142 Ga0070689_100029114
143 Ga0070687_100032135
144 Ga0070709_10000009
145 Ga0070662_100000236
146 Ga0070685_10000411
147 Ga0070686_100000146
148 Ga0070665_100000681
149 Ga0068862_100000407
150 Ga0070717_10190133
151 Ga0075434_100094303
152 Ga0075429_100096420
153 Ga0075436_100000080
154 Ga0075436_100090200
155 Ga0114129_10358823
156 Ga0105238_10000012
157 Ga0157380_10048288
158 Ga0207692_10033194
159 Ga0207680_10011792
160 Ga0207699_10000020
161 Ga0207662_10032059
162 Ga0207694_10000025
163 Ga0207706_10007766
164 Ga0207669_10059208
165 Ga0207712_10173504
166 Ga0207674_10082981
167 Ga0268266_10000663
168 Ga0268265_10000797
169 Ga0268264_10001266
170 Ga0265338_10029762
171 Ga0265320_10012312
172 Ga0265325_10022724
173 Ga0265340_10013854
174 Ga0265316_10021064
175 Ga0316579_10009187
176 Ga0316579_10016389
177 Ga0316579_10055369
178 Ga0265342_10038536
179 Ga0316576_10000796
180 Ga0316576_10004579
181 Ga0316576_10005667
182 Ga0316576_10008692
183 Ga0316576_10011403
184 Ga0316576_10025851
185 Ga0316576_10030899
186 Ga0316576_10047080
187 Ga0316576_10062882
188 Ga0316576_10094474
189 Ga0316578_10007135
190 Ga0316578_10017671
191 Ga0316578_10051320
192 Ga0307410_10022151
193 Ga0307409_100110364
194 Ga0307415_100019750
195 Ga0316583_10002099
196 Ga0316585_10002414
197 Ga0316585_10006500
198 Ga0316580_10005827
199 Ga0316592_1004564
200 Ga0316588_1008925
201 Ga0316596_1005502
202 Ga0373959_0000035
203 Ga0373929_0000019
204 Ga0373961_0000374
205 Ga0316574_0000934
206 Ga0316574_0010947
207 Ga0316574_0023546
208 Ga0316574_0025621
209 Ga0316574_0030029
210 Ga0316574_0034042
211 Ga0316574_0062944
212 Ga0316574_0068462
213 Ga0316574_0096188
214 Ga0373935_0010502
215 Ga0373927_0029773
216 Ga0373937_0056598
217 Ga0316582_0037159
218 Ga0316584_0001766
219 Ga0316584_0008673
220 Ga0316584_0014453
221 Ga0316584_0015815
222 Ga0316584_0025681
223 Ga0316584_0033311
224 Ga0316584_0040756
225 Ga0316584_0052395
226 Ga0316584_0052776
227 Ga0395899_0003252
228 Ga0395905_0001886
229 Ga0395905_0113446
230 Ga0395901_0023297
231 Ga0400484_01959
232 Ga0400490_34861
233 Ga0436365_0555552
234 Ga0451577_0001093
235 Ga0451577_0205656
236 Ga0466961_0001960
237 Ga0453684_0007019
238 Ga0453684_0043149
239 Ga0453684_0322960
240 Ga0451576_0192265
241 Ga0495651_0020748
242 Ga0495580_0092771
243 Ga0495608_0032446
244 Ga0495628_0040821
245 Ga0495630_0080545
246 Ga0495630_0088001
247 Ga0495630_0120156
248 Ga0495640_0016915
249 Ga0495586_0041929
250 Ga0495587_0065632
251 Ga0495667_0100139
252 Ga0495646_0063653
253 Ga0495658_0077280
254 Ga0495624_0048563
255 Ga0495604_0102816
256 Ga0495674_0153621
257 Ga0495680_0068883
258 Ga0495675_0007292
259 Ga0495684_0013010
260 Ga0495602_0054390
261 Ga0496114_0000007
262 Ga0501068_0090979
263 Ga0501072_0061950
264 Ga0501075_0012474
265 Ga0501075_0018950
266 Ga0501075_0101085
267 Ga0501077_0005932
268 Ga0501079_0052811
269 Ga0501080_0035343
270 nmdc:mga05p37_290306_c1
271 nmdc:mga0n895_252526_c1
272 nmdc:mga0n895_85577_c1
273 nmdc:mga0rr50_20910_c1
274 nmdc:mga08x19_186_c1
275 Ga0501084_0124198
276 Ga0501082_0000664
277 Ga0530510_0105023
278 2740031874

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00368

HMG-CoA_red

Hydroxymethylglutaryl-coenzyme A reductase

157

526

0.99

Structural Annotation

Top 5 Hits

ID Description Score Start End
1hwl-assembly1.cif.gz_D complex of the catalytic portion of human hmg-coa reductase with rosuvastatin (formally known as zd4522) 0.9277 137 497
2q1l-assembly1.cif.gz_B design and synthesis of pyrrole-based, hepatoselective hmg-coa reductase inhibitors 0.9264 139 497
3ccw-assembly1.cif.gz_D thermodynamic and structure guided design of statin hmg-coa reductase inhibitors 0.926 139 496
1hwk-assembly1.cif.gz_D complex of the catalytic portion of human hmg-coa reductase with atorvastatin 0.9255 139 497
2r4f-assembly1.cif.gz_B substituted pyrazoles as hepatselective hmg-coa reductase inhibitors 0.9248 139 497
ID Description Score Start End Superfamily
6hr7A02 Alpha Beta;Alpha-Beta Complex;3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2;3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2 0.9382 183 504 3.90.770.10
6hr7A02 Alpha Beta;Alpha-Beta Complex;3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2;3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2 0.9338 183 504 3.90.770.10
1hwjC03 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain 0.9177 238 347 3.30.70.420
af_K7U4P1_275_377_3.90.770.10 Alpha Beta;Alpha-Beta Complex;3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2;3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2 0.8957 238 337 3.90.770.10
1dq9C02 Alpha Beta;Alpha-Beta Complex;3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2;3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2 0.8918 183 504 3.90.770.10
ID Description Score Start End GO Terms
AF-A0A3M1SHY2-F1-model_v4 Hydroxymethylglutaryl-CoA reductase 0.9888 1 115
AF-A0A0S8KSG7-F1-model_v4 Hydroxymethylglutaryl-CoA reductase 0.9816 3 120
AF-A0A1V5YLR3-F1-model_v4 Uncharacterized protein 0.9751 3 120
AF-A0A7C3U7G1-F1-model_v4 Hydroxymethylglutaryl-CoA reductase 0.9748 1 121
AF-A0A661M798-F1-model_v4 Hydroxymethylglutaryl-CoA reductase 0.9741 3 119

Map